Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006743

Physical Location & Seq

Genomic Coordinates Reverse (-)

390326 .. 390890

Gene Structure 565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030877

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGCACCTCACCACAAAAATTGATGCTCGCTGAAAGAGGGAATGTGCTTCAATGTTTGAGTCGCCATCTGTGTGCATCAACAAACGCTGATCAAATTTTGGACCGAGTGGTTGGACTGGTGAAGAAATTTGATAAAATCGAGTCATCTAAGGTTACCAAAACAGCTGATTTCCAGAAGGACTTGAGCCTCGATAGTTTGGACAGGGTGGAGCTTGTTATGGCCTTTGAGGAAGAATTCTCCATTGAAATCCCCGAGGAGAAAGCGGATAAGCTCACCTGCTGCGCTGATGTTGCAAGATATATAGTTTCTGAAGCTGAGAAGGAGAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

112

Amino Acids

12.37

Weight (kDa)

4.81

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding_2	PF14573	30 - 108	2e-06	Acyl-carrier
PP-binding	PF00550	35 - 102	3e-09	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47630 AT5G47630 AT5G47630
fragaria_vesca	FvH4_3g00380
prunus_persica	Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1
pyrus_communis	pycom10g28830
rosa_chinensis	RchiOBHm_Chr5g0000581
rosa_laevigata	RLG00000030877
rosa_multiflora	Rmu_co8349929.1_g000001 Rmu_sc0003699.1_g000004 Rmu_sc0008807.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075630
rosa_rugosa	Rorug04G0384800 Rorug04G0384900 Rorug04G0385000 Rorug04G0385000
rosa_samantha	Rh5AG004700 Rh5BG006200 Rh5CG005100 Rh5DG005100
rosa_wichuraiana	Rw5G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	5
AciI	CCGC	1 cut(s)	266
AcsI	RAATTY	3 cut(s)	96, 128, 236
AcuI	CTGAAG	1 cut(s)	333
AgsI	TTSAA	2 cut(s)	53, 248
AluBI	AGCT	4 cut(s)	167, 214, 274, 317
AluI	AGCT	4 cut(s)	167, 214, 274, 317
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	3 cut(s)	96, 128, 236
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	3 cut(s)	3, 133, 268
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	75
BclI	TGATCA	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	287
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	7
BmsI	GCATC	2 cut(s)	15, 86
BpuEI	CTTGAG	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	254
BsnI	GGCC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	7
BspMI	ACCTGC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	150, 318
BstEII	GGTNACC	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstPI	GGTNACC	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	224
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	103
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviJI	RGCY	6 cut(s)	167, 189, 214, 224, 274, 317
CviKI_1	RGCY	6 cut(s)	167, 189, 214, 224, 274, 317
DdeI	CTNAG	2 cut(s)	150, 318
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	236
FaiI	YATR	3 cut(s)	221, 303, 305
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	283
Fsp4HI	GCNGC	1 cut(s)	283
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	224
HhaI	GCGC	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	2 cut(s)	61, 143
HphI	GGTGA	3 cut(s)	3, 133, 268
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	172, 316
HpyCH4V	TGCA	2 cut(s)	77, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	2 cut(s)	150, 318
HspAI	GCGC	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	4 cut(s)	104, 188, 190, 292
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	2 cut(s)	15, 86
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	136, 245
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	4 cut(s)	20, 96, 128, 236
MlyI	GAGTC	2 cut(s)	70, 152
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	5 cut(s)	19, 32, 200, 223, 250
MseI	TTAA	1 cut(s)	334
MslI	CAYNNNNRTG	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	7
PaqCI	CACCTGC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	284
PleI	GAGTC	2 cut(s)	69, 151
PpsI	GAGTC	2 cut(s)	69, 151
PspEI	GGTNACC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	334
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	2 cut(s)	70, 152
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	11, 156, 169, 216, 276, 281, 319
SfaNI	GCATC	2 cut(s)	15, 86
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	4 cut(s)	20, 96, 128, 236
SsiI	CCGC	1 cut(s)	266
TaqI	TCGA	2 cut(s)	141, 192
TaqII	GACCGA	1 cut(s)	120
TasI	AATT	4 cut(s)	20, 96, 128, 236
Tru1I	TTAA	1 cut(s)	334
Tru9I	TTAA	1 cut(s)	334
TseI	GCWGC	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	3 cut(s)	96, 128, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.