Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006743

Physical Location & Seq

Genomic Coordinates Forward (+)

29322749 .. 29324680

Gene Structure 1932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGTAATGGTAATGGTAAAGGCCTCCACTTCGTAAAGCAACCTGAAAATCGGGAAAAGTGGCGTGCCGCATTCGAACAAACCGATTGCGAACTAGAGCGGCAGCCTCGCGAGTCTGCTTTGTTTCATCATCTTTTCAACATGCAAAGCATTAGGAATTCCATCTTGTGGCATGTGAGGGTAGGGAGTTCAGCCGACAAATGTTTGCCCACCGAGAGAGGACATCTGATCAAATCTCTGAGCCGCCACATGTGTGCAGCAGCAGGTGCCGGCGCTGATCAAATAAAGGACCGAGTTATTAAATTGGTGAAGAAATTTGACAAAATTGATGCATCTAAGGTTACTGAAACAGCTGATTTCCAAAAGGACTTAAGCCTGGATAGTTTAGACAGGGTGGAGCTCGTAATGGCGTTTGAGGAAGAATTCTCCATTGAAATCCCTGAAGAGAAGGCCGATAAGTTGACCTGCTGTGCTGATGTTGCAAGATACATTACTTCTGGAGCTGAGCAGAAGTGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

174

Amino Acids

19.57

Weight (kDa)

6.31

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47630 AT5G47630 AT5G47630
fragaria_vesca	FvH4_3g00380
prunus_persica	Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1
pyrus_communis	pycom10g28830
rosa_chinensis	RchiOBHm_Chr5g0000581
rosa_laevigata	RLG00000030877
rosa_multiflora	Rmu_co8349929.1_g000001 Rmu_sc0003699.1_g000004 Rmu_sc0008807.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075630
rosa_rugosa	Rorug04G0384800 Rorug04G0384900 Rorug04G0385000 Rorug04G0385000
rosa_samantha	Rh5AG004700 Rh5BG006200 Rh5CG005100 Rh5DG005100
rosa_wichuraiana	Rw5G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	2 cut(s)	254, 473
AccB1I	GGYRCC	1 cut(s)	266
AccB7I	CCANNNNNTGG	1 cut(s)	168
AccBSI	CCGCTC	1 cut(s)	100
AccII	CGCG	1 cut(s)	111
AciI	CCGC	3 cut(s)	69, 100, 244
AcsI	RAATTY	3 cut(s)	157, 314, 422
AcuI	CTGAAG	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	168
AflII	CTTAAG	1 cut(s)	370
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	2 cut(s)	139, 434
AjnI	CCWGG	1 cut(s)	375
AleI	CACNNNNGTG	1 cut(s)	252
AluBI	AGCT	3 cut(s)	353, 400, 503
AluI	AGCT	3 cut(s)	353, 400, 503
Alw21I	GWGCWC	1 cut(s)	402
AoxI	GGCC	2 cut(s)	22, 450
ApeKI	GCWGC	3 cut(s)	103, 257, 260
ApoI	RAATTY	3 cut(s)	157, 314, 422
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	319
AsuII	TTCGAA	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	3 cut(s)	115, 269, 272
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	377
BclI	TGATCA	2 cut(s)	228, 277
BfaI	CTAG	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	276
BfrI	CTTAAG	1 cut(s)	370
BfuAI	ACCTGC	2 cut(s)	254, 473
BisI	GCNGC	6 cut(s)	69, 101, 104, 244, 258, 261
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	6 cut(s)	70, 102, 105, 245, 259, 262
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	2 cut(s)	319, 341
BpmI	CTGGAG	1 cut(s)	519
Bpu1102I	GCTNAGC	1 cut(s)	504
Bpu14I	TTCGAA	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse118I	RCCGGY	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	377
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	230, 495
BseXI	GCAGC	3 cut(s)	115, 269, 272
BsgI	GTGCAG	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	24, 452
BshNI	GGYRCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	24, 452
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	2 cut(s)	228, 277
Bsp1720I	GCTNAGC	1 cut(s)	504
Bsp68I	TCGCGA	1 cut(s)	111
BspACI	CCGC	3 cut(s)	69, 100, 244
BspANI	GGCC	2 cut(s)	24, 452
BspCNI	CTCAG	2 cut(s)	231, 496
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	268
BspMI	ACCTGC	2 cut(s)	254, 473
BspT104I	TTCGAA	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	266
BspTI	CTTAAG	1 cut(s)	370
BsrBI	CCGCTC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	269
BssAI	RCCGGY	1 cut(s)	269
BssMI	GATC	2 cut(s)	228, 277
Bst2UI	CCWGG	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	438
BstAFI	CTTAAG	1 cut(s)	370
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	2 cut(s)	66, 271
BstDEI	CTNAG	3 cut(s)	239, 336, 504
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	2 cut(s)	231, 280
BstMBI	GATC	2 cut(s)	228, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 479
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	3 cut(s)	145, 176, 253
BstSCI	CCNGG	1 cut(s)	375
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	115, 269, 272
BsuRI	GGCC	2 cut(s)	24, 452
BtuMI	TCGCGA	1 cut(s)	111
BveI	ACCTGC	2 cut(s)	254, 473
Cac8I	GCNNGC	2 cut(s)	66, 271
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	289
CviAII	CATG	3 cut(s)	142, 173, 250
CviJI	RGCY	9 cut(s)	24, 106, 194, 243, 353, 375, 400, 452, 503
CviKI_1	RGCY	9 cut(s)	24, 106, 194, 243, 353, 375, 400, 452, 503
DdeI	CTNAG	3 cut(s)	239, 336, 504
DpnI	GATC	2 cut(s)	230, 279
DpnII	GATC	2 cut(s)	228, 277
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	400
Eco147I	AGGCCT	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	462
EcoICRI	GAGCTC	1 cut(s)	400
EcoRI	GAATTC	2 cut(s)	157, 422
EcoRII	CCWGG	1 cut(s)	375
EcoT22I	ATGCAT	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	402
FaeI	CATG	3 cut(s)	145, 176, 253
FaiI	YATR	3 cut(s)	143, 174, 251
FatI	CATG	3 cut(s)	141, 172, 249
FbaI	TGATCA	2 cut(s)	228, 277
Fnu4HI	GCNGC	6 cut(s)	69, 101, 104, 244, 258, 261
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	6 cut(s)	69, 101, 104, 244, 258, 261
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	6 cut(s)	69, 101, 104, 244, 258, 261
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	24, 452
HapII	CCGG	1 cut(s)	270
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	3 cut(s)	145, 176, 253
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	462
Hpy188I	TCNGA	2 cut(s)	228, 240
Hpy188III	TCNNGA	3 cut(s)	53, 110, 498
Hpy8I	GTNNAC	1 cut(s)	462
HpyAV	CCTTC	1 cut(s)	442
HpyCH4V	TGCA	4 cut(s)	145, 257, 332, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 479
HpyF3I	CTNAG	3 cut(s)	239, 336, 504
Hsp92II	CATG	3 cut(s)	145, 176, 253
HspAI	GCGC	1 cut(s)	273
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
Ksp22I	TGATCA	2 cut(s)	228, 277
Kzo9I	GATC	2 cut(s)	228, 277
LmnI	GCTCC	2 cut(s)	397, 500
LpnPI	CCDG	9 cut(s)	57, 249, 283, 362, 376, 389, 453, 478, 483
Lsp1109I	GCAGC	3 cut(s)	115, 269, 272
LweI	GCATC	2 cut(s)	319, 341
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	2 cut(s)	230, 279
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	2 cut(s)	228, 277
MboII	GAAGA	3 cut(s)	322, 431, 455
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	5 cut(s)	157, 302, 314, 324, 422
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	5 cut(s)	35, 117, 171, 212, 409
Mph1103I	ATGCAT	1 cut(s)	334
MroNI	GCCGGC	1 cut(s)	269
MseI	TTAA	2 cut(s)	300, 371
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	353
MspCI	CTTAAG	1 cut(s)	370
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	377
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	266, 479
NaeI	GCCGGC	1 cut(s)	271
NdeII	GATC	2 cut(s)	228, 277
NgoMIV	GCCGGC	1 cut(s)	269
NlaIII	CATG	3 cut(s)	145, 176, 253
NlaIV	GGNNCC	1 cut(s)	268
NruI	TCGCGA	1 cut(s)	111
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	3 cut(s)	145, 176, 253
NspV	TTCGAA	1 cut(s)	75
OliI	CACNNNNGTG	1 cut(s)	252
PaqCI	CACCTGC	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	24
PciI	ACATGT	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	71
PdiI	GCCGGC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	168
PkrI	GCNGC	6 cut(s)	70, 102, 105, 245, 259, 262
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PscI	ACATGT	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	353
RruI	TCGCGA	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	300, 371
SatI	GCNGC	6 cut(s)	69, 101, 104, 244, 258, 261
Sau3AI	GATC	2 cut(s)	228, 277
Sau96I	GGNCC	1 cut(s)	289
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	7 cut(s)	46, 268, 342, 355, 402, 467, 505
SfaNI	GCATC	2 cut(s)	319, 341
SfuI	TTCGAA	1 cut(s)	75
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	5 cut(s)	157, 302, 314, 324, 422
SseBI	AGGCCT	1 cut(s)	24
SsiI	CCGC	3 cut(s)	69, 100, 244
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	402
StuI	AGGCCT	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	375
TaqI	TCGA	1 cut(s)	75
TaqII	GACCGA	1 cut(s)	306
TasI	AATT	5 cut(s)	157, 302, 314, 324, 422
TauI	GCSGC	3 cut(s)	71, 103, 246
Tru1I	TTAA	2 cut(s)	300, 371
Tru9I	TTAA	2 cut(s)	300, 371
TseI	GCWGC	3 cut(s)	103, 257, 260
TspDTI	ATGAA	1 cut(s)	116
Van91I	CCANNNNNTGG	1 cut(s)	168
Vha464I	CTTAAG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	3 cut(s)	157, 314, 422
XceI	RCATGY	3 cut(s)	145, 176, 253
XspI	CTAG	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.