Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006743

Physical Location & Seq

Genomic Coordinates Reverse (-)

461432 .. 463919

Gene Structure 2488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG006200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCAAAGCATTCGAAATTCCATCTTGTGGCATGTGACTGTGAGGATGAGCTCTTCCCCACAAAAATTGGTGCTCGCTGAAAGAGGGAATGTGCTTAAATGTTTGAGTCGCCATCTGTGTGCATCAACAGACACTGATCAAATTTTGGACCGAGTGGTTGGACTGGTGAAGAAATTTGATAAAATCGAGTCATCTAAGGTTACCGAAACAGCTGATTTCCAGAAGGACTTGAGCCTCGATAGTTTGGACAGGGTGGAGCTTGTTATGGCCTTTGAGGAAGAATTCTCCATTGAAATCCCCGAGGAGAAAGCAGATAAGCTCACCTGCTGCGCTGATGTTGCAAGATATATAGTTTCTGAAGCTGAGAAGAAGAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

126

Amino Acids

14.21

Weight (kDa)

5.24

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding_2	PF14573	43 - 124	5.8e-07	Acyl-carrier
PP-binding	PF00550	50 - 117	2.3e-09	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47630 AT5G47630 AT5G47630
fragaria_vesca	FvH4_3g00380
prunus_persica	Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1
pyrus_communis	pycom10g28830
rosa_chinensis	RchiOBHm_Chr5g0000581
rosa_laevigata	RLG00000030877
rosa_multiflora	Rmu_co8349929.1_g000001 Rmu_sc0003699.1_g000004 Rmu_sc0008807.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075630
rosa_rugosa	Rorug04G0384800 Rorug04G0384900 Rorug04G0385000 Rorug04G0385000
rosa_samantha	Rh5AG004700 Rh5BG006200 Rh5CG005100 Rh5DG005100
rosa_wichuraiana	Rw5G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	332
AccB7I	CCANNNNNTGG	1 cut(s)	27
AcsI	RAATTY	4 cut(s)	16, 141, 173, 281
AcuI	CTGAAG	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	293
AluBI	AGCT	5 cut(s)	51, 212, 259, 319, 362
AluI	AGCT	5 cut(s)	51, 212, 259, 319, 362
Alw21I	GWGCWC	2 cut(s)	53, 75
AlwNI	CAGNNNCTG	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	327
ApoI	RAATTY	4 cut(s)	16, 141, 173, 281
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	2 cut(s)	178, 313
AsuII	TTCGAA	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	53
Bbv12I	GWGCWC	2 cut(s)	53, 75
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	2 cut(s)	29, 120
BcgI	CGANNNNNNTGC	1 cut(s)	27
BclI	TGATCA	1 cut(s)	136
BfuAI	ACCTGC	1 cut(s)	332
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	148
BmsI	GCATC	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	314
BshFI	GGCC	1 cut(s)	269
BsiHKAI	GWGCWC	2 cut(s)	53, 75
BsiHKCI	CYCGRG	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	299
Bsp119I	TTCGAA	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	53, 75
Bsp143I	GATC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	355
BspMI	ACCTGC	1 cut(s)	332
BspQI	GCTCTTC	1 cut(s)	58
BspT104I	TTCGAA	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	2 cut(s)	58, 365
BstBI	TTCGAA	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	195, 363
BstEII	GGTNACC	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	35
BstPI	GGTNACC	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	148
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	7 cut(s)	51, 212, 234, 259, 269, 319, 362
CviKI_1	RGCY	7 cut(s)	51, 212, 234, 259, 269, 319, 362
DdeI	CTNAG	2 cut(s)	195, 363
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	58, 365
EarI	CTCTTC	2 cut(s)	58, 365
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	299
Eco91I	GGTNACC	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	51
EcoO65I	GGTNACC	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	53
FaeI	CATG	1 cut(s)	35
FaiI	YATR	4 cut(s)	33, 266, 348, 350
FatI	CATG	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	328
FokI	GGATG	1 cut(s)	58
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	328
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HinfI	GANTC	2 cut(s)	106, 188
HphI	GGTGA	2 cut(s)	178, 313
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	3 cut(s)	4, 122, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	195, 363
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	136
LguI	GCTCTTC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	4 cut(s)	149, 233, 235, 337
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	34, 199
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	4 cut(s)	45, 181, 290, 379
MhlI	GDGCHC	2 cut(s)	53, 75
MluCI	AATT	5 cut(s)	16, 65, 141, 173, 281
MlyI	GAGTC	2 cut(s)	115, 197
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	5 cut(s)	36, 77, 245, 268, 295
MseI	TTAA	2 cut(s)	96, 379
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	35
NspV	TTCGAA	1 cut(s)	13
PaqCI	CACCTGC	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	58
PctI	GAATGC	1 cut(s)	9
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	329
PleI	GAGTC	2 cut(s)	114, 196
PpsI	GAGTC	2 cut(s)	114, 196
Psp124BI	GAGCTC	1 cut(s)	53
PspEI	GGTNACC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	96, 379
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	2 cut(s)	115, 197
SduI	GDGCHC	2 cut(s)	53, 75
SetI	ASST	7 cut(s)	53, 201, 214, 261, 321, 326, 364
SfaNI	GCATC	1 cut(s)	131
SfuI	TTCGAA	1 cut(s)	13
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	5 cut(s)	16, 65, 141, 173, 281
SstI	GAGCTC	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	3 cut(s)	13, 186, 237
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	5 cut(s)	16, 65, 141, 173, 281
Tru1I	TTAA	2 cut(s)	96, 379
Tru9I	TTAA	2 cut(s)	96, 379
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	327
Tsp45I	GTSAC	1 cut(s)	34
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	4 cut(s)	16, 141, 173, 281
XceI	RCATGY	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.