Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006743

Physical Location & Seq

Genomic Coordinates Forward (+)

96304701 .. 96305636

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCAAAGCATTCGAAATTCCATCTTGTGGCATGTGAGGATGGGCACTTCACCACAAAAATTGATGCTCGCTGAAAGAGGGAATGTGCTTAAATGTTTGAGTCGCCATCTGTGTGCATCAACAAACACTGATCAAATTTTGCACCGAGTGGTTGGACTGGTGAAGAAATTTGATAAAATCGAGTCATCTAAGGTTACCAAAACAGCTGATTTCCAGAAGGACTTGAGCCTCGATAGTTTGGACAGGGTGGAGCTTGTTATGGCCTTTGAGGAGGAATTCTCCATTGAAATCCCCGAGGAGAAAGCAGATAAGCTCACCTGCTGCGCTGATGTTGCAAGATATATAGTTTCTGAAGCTGAGAAGAAGAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

124

Amino Acids

14.04

Weight (kDa)

6.82

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding_2	PF14573	44 - 122	1.9e-06	Acyl-carrier
PP-binding	PF00550	49 - 115	5.6e-09	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47630 AT5G47630 AT5G47630
fragaria_vesca	FvH4_3g00380
prunus_persica	Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1
pyrus_communis	pycom10g28830
rosa_chinensis	RchiOBHm_Chr5g0000581
rosa_laevigata	RLG00000030877
rosa_multiflora	Rmu_co8349929.1_g000001 Rmu_sc0003699.1_g000004 Rmu_sc0008807.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075630
rosa_rugosa	Rorug04G0384800 Rorug04G0384900 Rorug04G0385000 Rorug04G0385000
rosa_samantha	Rh5AG004700 Rh5BG006200 Rh5CG005100 Rh5DG005100
rosa_wichuraiana	Rw5G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	326
Acc36I	ACCTGC	1 cut(s)	326
AccB7I	CCANNNNNTGG	1 cut(s)	27
AcsI	RAATTY	4 cut(s)	16, 135, 167, 275
AcuI	CTGAAG	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	287
AluBI	AGCT	4 cut(s)	206, 253, 313, 356
AluI	AGCT	4 cut(s)	206, 253, 313, 356
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	321
ApoI	RAATTY	4 cut(s)	16, 135, 167, 275
AspLEI	GCGC	1 cut(s)	326
AsuHPI	GGTGA	3 cut(s)	42, 172, 307
AsuII	TTCGAA	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	3 cut(s)	29, 34, 114
BcgI	CGANNNNNNTGC	1 cut(s)	27
BclI	TGATCA	1 cut(s)	130
BfuAI	ACCTGC	1 cut(s)	326
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
BmeT110I	CYCGRG	1 cut(s)	293
BmsI	GCATC	2 cut(s)	54, 125
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
Bpu14I	TTCGAA	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	2 cut(s)	284, 311
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	308
BshFI	GGCC	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	263
BsoBI	CYCGRG	1 cut(s)	293
Bsp119I	TTCGAA	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	349
BspMI	ACCTGC	1 cut(s)	326
BspT104I	TTCGAA	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	359
BstBI	TTCGAA	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	189, 357
BstEII	GGTNACC	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	35
BstPI	GGTNACC	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	1 cut(s)	69
CfoI	GCGC	1 cut(s)	326
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	6 cut(s)	206, 228, 253, 263, 313, 356
CviKI_1	RGCY	6 cut(s)	206, 228, 253, 263, 313, 356
DdeI	CTNAG	2 cut(s)	189, 357
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DraIII	CACNNNGTG	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	293
Eco91I	GGTNACC	1 cut(s)	193
EcoO65I	GGTNACC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	275
FaeI	CATG	1 cut(s)	35
FaiI	YATR	4 cut(s)	33, 260, 342, 344
FatI	CATG	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	322
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	322
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HinfI	GANTC	2 cut(s)	100, 182
HphI	GGTGA	3 cut(s)	42, 172, 307
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	211
HpyCH4V	TGCA	4 cut(s)	4, 116, 142, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	2 cut(s)	189, 357
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	1 cut(s)	324
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	4 cut(s)	143, 227, 229, 331
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	2 cut(s)	54, 125
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	175, 373
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	5 cut(s)	16, 59, 135, 167, 275
MlyI	GAGTC	2 cut(s)	109, 191
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	30, 71, 239, 262, 265, 289
MseI	TTAA	2 cut(s)	90, 373
MslI	CAYNNNNRTG	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	35
NspI	RCATGY	1 cut(s)	35
NspV	TTCGAA	1 cut(s)	13
PaqCI	CACCTGC	1 cut(s)	326
PctI	GAATGC	1 cut(s)	9
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	323
PleI	GAGTC	2 cut(s)	108, 190
PpsI	GAGTC	2 cut(s)	108, 190
PspEI	GGTNACC	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	90, 373
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	1 cut(s)	130
SchI	GAGTC	2 cut(s)	109, 191
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	6 cut(s)	195, 208, 255, 315, 320, 358
SfaNI	GCATC	2 cut(s)	54, 125
SfuI	TTCGAA	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	5 cut(s)	16, 59, 135, 167, 275
TaqI	TCGA	3 cut(s)	13, 180, 231
TasI	AATT	5 cut(s)	16, 59, 135, 167, 275
Tru1I	TTAA	2 cut(s)	90, 373
Tru9I	TTAA	2 cut(s)	90, 373
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	1 cut(s)	321
TspRI	CASTG	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	27
XapI	RAATTY	4 cut(s)	16, 135, 167, 275
XceI	RCATGY	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.