Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008443

Physical Location & Seq

Genomic Coordinates Forward (+)

19683809 .. 19687187

Gene Structure 3379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGACAACGAGCTGTTTATGAACACAGAGTTTCCACCACCGCCGGAGATGGCGACGCATTTCGAACACCAACAGTCTTCTTCATCGGCCATGATGCTTAATTGGGCTTTAATGGATCCAAATCCGCATCAAGATTCTTCCTTTTTATGGGAAAAGTCAACGGAACAACAACAACAACAAAGCATCTTTGACTCTGCTTTAAGCTCATTAGTCTCATCACCGACGCCGTCAAATTCCAACTTCTCCGGCGGTGGCGGTGACGGTTTTCTCATCAGAGAACTCATCGGAAAGCTTGGAAACATCGGTAATAATAATAACAACTCCGGTGAGATCTACGGAACTCCGATGTCTCGCTCCGCCTCATGTTACGCAACTCCGATGAGCTCTCCACCGCCACCGACGAATTCGAATTCTCAGATGATGATGAACAGAACGACGCCGTTGACGGAATTCTCAGCAGATCCGGGTTTTGCGGAGAGAGCAGCTAGATTCTCTTGTTTTGGTAGTCGGAGCTTTAACGGAAGAACCAATACAAATCTTCCGATTAACAACGGTAATAACATGGTCAACAACTCCGGGAAGCTGACACGTGTCTCCAGCACACCAGCTCTTAAGGCTCTTGTTTCACCGGAAGTCACACCCGGCGGCGAATTTTCCCGGAAGAGAAAATCTGTGCCTAAAGGAAAATCCAAAGAAAACCCCATTTCTACAGCTTCTCCATCTCCTAGTTTCTCAAAGACGGCGGAAAAGAATGGTGGAAAAGGAGGAAGTAAAAGTTCAGAAGAAAAAGGAGGAAAAAGGAGAAGAGAAGAAGAAGATGATGAAGAAGAAGAAGGAGAAGGTGAAGGGAACAAAAGCAATAACACAAAACCACCTGAGCCTCCTAAAGATTACATTCATGTTCGAGCTCGACGAGGCCAAGCAACCGATAGTCACAGCCTCGCCGAACGAGTTCGGAGGGAGAAAATTGGTGAAAGGATGAAGCTTCTTCAAGATCTTGTGCCTGGATGCAATAAGGTTACTGGAAAAGCACTGATGCTTGATGAAATTATAAACTACGTACAATCATTGCAAAGACAAGTTGAGTTCTTGTCAATGAAGTTATCATCAGTGAACGACACCAGGCTGGATTTTAACGTGGACGCTCTTGTGTCAAAGGATGTTATGATTCCATCAAGTAACAACCGATTGCATGAAGAAGGACTCCAATCAAAGTCTTCAAGTCATCATCATCAACAACAACTTAATATTTATAACAATAATTCACAATTACTTCCCAATATTTCTTCCAATAACATGATGCTCCAGTCTCCTATGAACTCTTTGGAAACCTCTACCTTAGCCAGAAGCTTCACTCACTTACCAACACTTACCCAATTTACTGACTCAATTTCTCAGTATCAAATGTTTAGCGAAGAAGATTTACAAAGCATAGTAGGAATGGGAGTGGCAGAAAACCCCAACAATGAATCTCAACACATGAAAATTGAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

498

Amino Acids

54.88

Weight (kDa)

5.95

Isoelectric Point (pI)

63.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	311 - 358	4.3e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	316 - 361	1.1e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07340 AT3G07340 AT5G48560 AT5G48560
fragaria_vesca	FvH4_2g18100 FvH4_2g18100
malus_domestica	MD05G1165800.v1.1 MD10G1156100.v1.1
prunus_persica	Prupe.8G193900_v2.0.a1 Prupe.8G193900_v2.0.a1
pyrus_communis	pycom05g15450 pycom10g13430
rosa_chinensis	RchiOBHm_Chr6g0283511
rosa_laevigata	RLG00000012821
rosa_multiflora	Rmu_sc0004959.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185480
rosa_rugosa	Rorug06G0154900 Rorug06G0155000
rosa_samantha	Rh6AG267200 Rh6BG269700 Rh6CG269500 Rh6DG263000
rosa_wichuraiana	Rw6G023130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1052, 1254
AciI	CCGC	9 cut(s)	41, 125, 249, 255, 357, 392, 473, 645, 743
AclWI	GGATC	3 cut(s)	110, 123, 455
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	5 cut(s)	232, 403, 409, 449, 650
AcvI	CACGTG	1 cut(s)	590
AcyI	GRCGYC	2 cut(s)	224, 437
AfaI	GTAC	1 cut(s)	1062
AfiI	CCNNNNNNNGG	1 cut(s)	147
AflII	CTTAAG	1 cut(s)	611
AflIII	ACRYGT	2 cut(s)	587, 589
AgsI	TTSAA	2 cut(s)	992, 1221
AjnI	CCWGG	2 cut(s)	1003, 1121
Alw21I	GWGCWC	2 cut(s)	386, 910
Alw26I	GTCTC	4 cut(s)	217, 354, 598, 1314
AlwI	GGATC	3 cut(s)	110, 123, 455
AoxI	GGCC	2 cut(s)	87, 916
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	5 cut(s)	232, 403, 409, 449, 650
Asp700I	GAANNNNTTC	1 cut(s)	951
AsuC2I	CCSGG	4 cut(s)	465, 577, 642, 658
AsuHPI	GGTGA	6 cut(s)	210, 269, 338, 618, 854, 983
AsuII	TTCGAA	2 cut(s)	63, 407
BamHI	GGATCC	1 cut(s)	115
BanII	GRGCYC	2 cut(s)	386, 910
BarI	GAAGNNNNNNTAC	4 cut(s)	514, 546, 1407, 1439
BbrPI	CACGTG	1 cut(s)	590
BbsI	GAAGAC	2 cut(s)	69, 1209
Bbv12I	GWGCWC	2 cut(s)	386, 910
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	3 cut(s)	43, 727, 1180
BceAI	ACGGC	3 cut(s)	211, 424, 756
BciT130I	CCWGG	2 cut(s)	1005, 1123
BcnI	CCSGG	4 cut(s)	465, 577, 642, 658
BcoDI	GTCTC	4 cut(s)	217, 354, 598, 1314
BfaI	CTAG	2 cut(s)	486, 726
BfmI	CTRYAG	1 cut(s)	708
BfrI	CTTAAG	1 cut(s)	611
BglII	AGATCT	2 cut(s)	330, 994
BisI	GCNGC	2 cut(s)	483, 646
BlsI	GCNGC	2 cut(s)	484, 647
Bme1390I	CCNGG	6 cut(s)	465, 577, 642, 658, 1005, 1123
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	6 cut(s)	465, 577, 642, 658, 1005, 1123
BmsI	GCATC	6 cut(s)	84, 136, 192, 998, 1026, 1290
BoxI	GACNNNNGTC	1 cut(s)	590
BpiI	GAAGAC	2 cut(s)	69, 1209
BpmI	CTGGAG	2 cut(s)	580, 1289
Bpu10I	CCTNAGC	2 cut(s)	876, 1339
Bpu14I	TTCGAA	2 cut(s)	63, 407
BpuMI	CCSGG	4 cut(s)	465, 577, 642, 658
BsaAI	YACGTR	2 cut(s)	590, 1060
BsaBI	GATNNNNATC	1 cut(s)	120
BsaHI	GRCGYC	2 cut(s)	224, 437
BsaWI	WCCGGW	2 cut(s)	323, 628
BsaXI	ACNNNNNCTCC	2 cut(s)	700, 730
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse1I	ACTGG	2 cut(s)	1027, 1306
Bse3DI	GCAATG	1 cut(s)	1067
Bse8I	GATNNNNATC	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	1005, 1123
BseGI	GGATG	3 cut(s)	984, 1013, 1165
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	1067
BseMII	CTCAG	4 cut(s)	428, 468, 867, 1409
BseNI	ACTGG	2 cut(s)	1027, 1306
BseXI	GCAGC	1 cut(s)	494
BshFI	GGCC	2 cut(s)	89, 918
BsiHKAI	GWGCWC	2 cut(s)	386, 910
BsiSI	CCGG	8 cut(s)	44, 246, 324, 464, 576, 629, 642, 658
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	4 cut(s)	217, 354, 598, 1314
BsnI	GGCC	2 cut(s)	89, 918
Bsp119I	TTCGAA	2 cut(s)	63, 407
Bsp1286I	GDGCHC	2 cut(s)	386, 910
Bsp143I	GATC	4 cut(s)	115, 330, 460, 994
BspACI	CCGC	9 cut(s)	41, 125, 249, 255, 357, 392, 473, 645, 743
BspANI	GGCC	2 cut(s)	89, 918
BspCNI	CTCAG	4 cut(s)	427, 467, 868, 1408
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	3 cut(s)	110, 123, 455
BspT104I	TTCGAA	2 cut(s)	63, 407
BspTI	CTTAAG	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	1067
BsrI	ACTGG	2 cut(s)	1027, 1306
BssMI	GATC	4 cut(s)	115, 330, 460, 994
BssNI	GRCGYC	2 cut(s)	224, 437
Bst2UI	CCWGG	2 cut(s)	1005, 1123
Bst4CI	ACNGT	3 cut(s)	75, 263, 554
Bst6I	CTCTTC	2 cut(s)	656, 799
BstACI	GRCGYC	2 cut(s)	224, 437
BstAFI	CTTAAG	1 cut(s)	611
BstBAI	YACGTR	2 cut(s)	590, 1060
BstBI	TTCGAA	2 cut(s)	63, 407
BstDEI	CTNAG	5 cut(s)	414, 454, 876, 1339, 1395
BstF5I	GGATG	3 cut(s)	984, 1013, 1165
BstKTI	GATC	4 cut(s)	118, 333, 463, 997
BstMAI	GTCTC	4 cut(s)	217, 354, 598, 1314
BstMBI	GATC	4 cut(s)	115, 330, 460, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 614
BstNI	CCWGG	2 cut(s)	1005, 1123
BstPAI	GACNNNNGTC	1 cut(s)	590
BstSCI	CCNGG	6 cut(s)	463, 575, 640, 656, 1003, 1121
BstSFI	CTRYAG	1 cut(s)	708
BstSNI	TACGTA	1 cut(s)	1060
BstV1I	GCAGC	1 cut(s)	494
BstV2I	GAAGAC	2 cut(s)	69, 1209
BstX2I	RGATCY	4 cut(s)	115, 330, 460, 994
BstYI	RGATCY	4 cut(s)	115, 330, 460, 994
BsuRI	GGCC	2 cut(s)	89, 918
BtsCI	GGATG	3 cut(s)	984, 1013, 1165
BtsIMutI	CAGTG	2 cut(s)	1031, 1116
CseI	GACGC	4 cut(s)	64, 232, 445, 1151
Csp6I	GTAC	1 cut(s)	1061
CviAII	CATG	7 cut(s)	91, 363, 562, 899, 1193, 1297, 1480
CviQI	GTAC	1 cut(s)	1061
DdeI	CTNAG	5 cut(s)	414, 454, 876, 1339, 1395
DpnI	GATC	4 cut(s)	117, 332, 462, 996
DpnII	GATC	4 cut(s)	115, 330, 460, 994
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	656, 799
EarI	CTCTTC	2 cut(s)	656, 799
EciI	GGCGGA	2 cut(s)	346, 758
Ecl136II	GAGCTC	2 cut(s)	384, 908
Eco105I	TACGTA	1 cut(s)	1060
Eco24I	GRGCYC	2 cut(s)	386, 910
Eco53kI	GAGCTC	2 cut(s)	384, 908
Eco72I	CACGTG	1 cut(s)	590
EcoICRI	GAGCTC	2 cut(s)	384, 908
EcoRI	GAATTC	3 cut(s)	403, 409, 449
EcoRII	CCWGG	2 cut(s)	1003, 1121
EcoT38I	GRGCYC	2 cut(s)	386, 910
FaeI	CATG	7 cut(s)	94, 366, 565, 902, 1196, 1300, 1483
FatI	CATG	7 cut(s)	90, 362, 561, 898, 1192, 1296, 1479
Fnu4HI	GCNGC	2 cut(s)	483, 646
FokI	GGATG	3 cut(s)	991, 1020, 1172
FriOI	GRGCYC	2 cut(s)	386, 910
Fsp4HI	GCNGC	2 cut(s)	483, 646
FspBI	CTAG	2 cut(s)	486, 726
GluI	GCNGC	2 cut(s)	483, 646
GsuI	CTGGAG	2 cut(s)	580, 1289
HaeIII	GGCC	2 cut(s)	89, 918
HapII	CCGG	8 cut(s)	44, 246, 324, 464, 576, 629, 642, 658
HgaI	GACGC	4 cut(s)	64, 232, 445, 1151
Hin1I	GRCGYC	2 cut(s)	224, 437
Hin1II	CATG	7 cut(s)	94, 366, 565, 902, 1196, 1300, 1483
HincII	GTYRAC	3 cut(s)	159, 444, 568
HindII	GTYRAC	3 cut(s)	159, 444, 568
HindIII	AAGCTT	3 cut(s)	290, 983, 1348
HinfI	GANTC	7 cut(s)	134, 191, 489, 1168, 1203, 1385, 1469
HpaII	CCGG	8 cut(s)	44, 246, 324, 464, 576, 629, 642, 658
HphI	GGTGA	6 cut(s)	210, 269, 338, 618, 854, 983
Hpy166II	GTNNAC	5 cut(s)	159, 444, 568, 1114, 1141
Hpy188I	TCNGA	9 cut(s)	275, 287, 345, 378, 417, 510, 543, 781, 957
Hpy188III	TCNNGA	2 cut(s)	131, 992
Hpy8I	GTNNAC	5 cut(s)	159, 444, 568, 1114, 1141
Hpy99I	CGWCG	5 cut(s)	58, 226, 403, 439, 915
HpyAV	CCTTC	4 cut(s)	827, 833, 839, 1193
HpyCH4III	ACNGT	3 cut(s)	75, 263, 554
HpyCH4IV	ACGT	3 cut(s)	589, 1059, 1137
HpyCH4V	TGCA	3 cut(s)	1011, 1072, 1192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 614
HpyF3I	CTNAG	5 cut(s)	414, 454, 876, 1339, 1395
HpySE526I	ACGT	3 cut(s)	589, 1059, 1137
Hsp92I	GRCGYC	2 cut(s)	224, 437
Hsp92II	CATG	7 cut(s)	94, 366, 565, 902, 1196, 1300, 1483
Kzo9I	GATC	4 cut(s)	115, 330, 460, 994
LmnI	GCTCC	3 cut(s)	359, 510, 1308
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	6 cut(s)	84, 136, 192, 998, 1026, 1290
MaeI	CTAG	2 cut(s)	486, 726
MaeII	ACGT	3 cut(s)	589, 1059, 1137
MaeIII	GTNAC	6 cut(s)	257, 365, 634, 932, 1018, 1178
MalI	GATC	4 cut(s)	117, 332, 462, 996
MboI	GATC	4 cut(s)	115, 330, 460, 994
MflI	RGATCY	4 cut(s)	115, 330, 460, 994
MhlI	GDGCHC	2 cut(s)	386, 910
MlyI	GAGTC	3 cut(s)	185, 1197, 1379
MmeI	TCCRAC	2 cut(s)	261, 488
MnlI	CCTC	8 cut(s)	370, 758, 785, 891, 908, 950, 951, 1342
MroXI	GAANNNNTTC	1 cut(s)	951
MseI	TTAA	8 cut(s)	99, 110, 200, 516, 546, 612, 1134, 1245
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	8 cut(s)	44, 246, 324, 464, 576, 629, 642, 658
MspR9I	CCNGG	6 cut(s)	465, 577, 642, 658, 1005, 1123
MvaI	CCWGG	2 cut(s)	1005, 1123
MwoI	GCNNNNNNNGC	2 cut(s)	479, 614
NciI	CCSGG	4 cut(s)	465, 577, 642, 658
NdeII	GATC	4 cut(s)	115, 330, 460, 994
NlaIII	CATG	7 cut(s)	94, 366, 565, 902, 1196, 1300, 1483
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	3 cut(s)	257, 634, 932
NspV	TTCGAA	2 cut(s)	63, 407
PcsI	WCGNNNNNNNCGW	1 cut(s)	910
PdmI	GAANNNNTTC	1 cut(s)	951
PfeI	GAWTC	4 cut(s)	134, 489, 1168, 1469
PflFI	GACNNNGTC	1 cut(s)	226
PfoI	TCCNGGA	2 cut(s)	575, 656
PkrI	GCNGC	2 cut(s)	484, 647
PleI	GAGTC	3 cut(s)	185, 1197, 1379
PmaCI	CACGTG	1 cut(s)	590
PmlI	CACGTG	1 cut(s)	590
PpsI	GAGTC	3 cut(s)	185, 1197, 1379
Ppu21I	YACGTR	2 cut(s)	590, 1060
PshAI	GACNNNNGTC	1 cut(s)	590
PsiI	TTATAA	2 cut(s)	1052, 1254
Psp124BI	GAGCTC	2 cut(s)	386, 910
Psp6I	CCWGG	2 cut(s)	1003, 1121
PspCI	CACGTG	1 cut(s)	590
PspGI	CCWGG	2 cut(s)	1003, 1121
PspN4I	GGNNCC	1 cut(s)	117
PsuI	RGATCY	4 cut(s)	115, 330, 460, 994
PsyI	GACNNNGTC	1 cut(s)	226
RsaI	GTAC	1 cut(s)	1062
RsaNI	GTAC	1 cut(s)	1061
SacI	GAGCTC	2 cut(s)	386, 910
SaqAI	TTAA	8 cut(s)	99, 110, 200, 516, 546, 612, 1134, 1245
SatI	GCNGC	2 cut(s)	483, 646
Sau3AI	GATC	4 cut(s)	115, 330, 460, 994
SchI	GAGTC	3 cut(s)	185, 1197, 1379
ScrFI	CCNGG	6 cut(s)	465, 577, 642, 658, 1005, 1123
SduI	GDGCHC	2 cut(s)	386, 910
SfaNI	GCATC	6 cut(s)	84, 136, 192, 998, 1026, 1290
SfcI	CTRYAG	1 cut(s)	708
SfuI	TTCGAA	2 cut(s)	63, 407
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
SnaBI	TACGTA	1 cut(s)	1060
SsiI	CCGC	9 cut(s)	41, 125, 249, 255, 357, 392, 473, 645, 743
SspI	AATATT	2 cut(s)	1249, 1282
SspMI	CTAG	2 cut(s)	486, 726
SstI	GAGCTC	2 cut(s)	386, 910
StyD4I	CCNGG	6 cut(s)	463, 575, 640, 656, 1003, 1121
TaaI	ACNGT	3 cut(s)	75, 263, 554
TaiI	ACGT	3 cut(s)	592, 1062, 1140
TaqI	TCGA	4 cut(s)	63, 407, 904, 910
TauI	GCSGC	1 cut(s)	648
TfiI	GAWTC	4 cut(s)	134, 489, 1168, 1469
Tru1I	TTAA	8 cut(s)	99, 110, 200, 516, 546, 612, 1134, 1245
Tru9I	TTAA	8 cut(s)	99, 110, 200, 516, 546, 612, 1134, 1245
TscAI	CASTG	2 cut(s)	1038, 1116
TseFI	GTSAC	3 cut(s)	257, 634, 932
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	3 cut(s)	257, 634, 932
TspGWI	ACGGA	4 cut(s)	176, 351, 461, 534
TspRI	CASTG	2 cut(s)	1038, 1116
Tth111I	GACNNNGTC	1 cut(s)	226
Vha464I	CTTAAG	1 cut(s)	611
XapI	RAATTY	5 cut(s)	232, 403, 409, 449, 650
XmnI	GAANNNNTTC	1 cut(s)	951
XspI	CTAG	2 cut(s)	486, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.