Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008443

Physical Location & Seq

Genomic Coordinates Forward (+)

18711810 .. 18715211

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G193900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

ATGGAGAATGAGTTTTTTCTAAATGCTGGAATCCCACCACCACTTCACTTTGAGCAAACATCTTCAATGCCGGCATGGCGTTCTTCGTTCTCGACCGCCATGGACATCCAAGCCACCGCCACGGCAGACCGGAATTGCTCATCAGAGCAGTCACCGGATTGCTTCTACAATCCCAACTGGGACAAGTCAGCCGACCAGAACATCCACTTCGAGTCAGCTCTGAGTTCAATGGTGTCTTCCCCGGCGGCATCAAATTCCAACATCTCCAATGAGAGCTTTGTGATCAGAGAGTTGATAGGGAAGCTTGGAAACATTGGGAGCTCCGGTGAGATCTCGCCGCACTCTCAGTCCTTGTTGGGAATTCAGGCGAATACTTACATGGGTAGAAATGGAAATGGAAATGGAAATGCAAGCACCAACACTTCATGTTATAGCACTCCTTTGAACTCGCCTCCTAAGCTGAGCTTGCCCATCATGGATCATCATTTGAAGAAAGAAAAGCTGCCCAATATGGGAAAGCCCATGCCTTTGAATTCTAGTGTGGCTGAGTTCTCAGCTGACCCTGGATTTGCAGAAAGAGCTGCTAAATTTTCATGCTTTGGGAGCAGGAGCTTCAATGGCAGAACAACCCAACTTGGAATGAACAACAACAGCAGCAGCAACAACAATACTGAGCTGCCTTATAGATCTAATGCCATTATGGGAAATGGTAAGCTTCCTCGGGTTTCGAGCAGCCCTGCTCTTAAGGCACTTGGATCTCAGACAGGTCTGCAAGAAAAGATGAATTCTTTGCTGCAGGATCGAAATGAATTGCCCATTTCTCGAGAGGAATCAACACTTTCTGAACAAAACCCAAATGGGGAGACAGGGTTGGTAGCTTCCAATTCCATGGATTTGAATTCCAGGAAAAGAAAATCAGTTTCCAAGGGAAAAGCTAAGGAGCCTCCACCAATATCATCCCCATCTCCCATTGCTACAAAGGGGGCTGAACTTAATGATAATTCTAATGCAAAGAGAAGCAAGCCAAATGAAAATAATGGGAATGATCAAAATGGCTCTGTTAAAGCAGAGGAGGATACAAAGGGAAGCACCAGTAGTGATGAGAAGCAAACCAAGACTGGTGCAAAGCCACCTGAGCCTCCCAAGGACTACATTCATGTAAGAGCAAGAAGGGGTCAAGCCACTGACAGCCATAGTTTAGCTGAAAGGGTCCGAAGAGAGAAGATCAGTGAAAGGATGAAGCTTCTTCAAGATCTTGTACCTGGCTGTAACAAGGTCACTGGAAAAGCACTTATGCTTGATGAGATTATAAATTATGTTCAGTCATTACAACGTCAAGTCGAGTTCCTCTCTATGAAGTTGGCTTCTGTGAACACCAGGCTGGATTTCAACATGGATGCTCTAATGTCAAAAGAAATATTTCAACAAAACAACTCTTTGCCACAACATCCAATATTCCCATTAGATTCCTCGGCACAAGCCATTTATGGCCACCAGCGCCAGCAAAATCCAGCACTACAGAACAACATTTCTAATGGAGCAGTGGACCCCTTAGATACCTCACTATGCCAAAGCCTTGGGATGCAGTTACCTCCACTCAGTGGTTTTAGCAGCGAAGGCATTCCTCAGTTTCCAGCATTTGGTGAAGATGATCTGCAAACCATTGTCCAAATGGGGTATGGTCAAAATCCAAATAGGGAAACAGAATTGGATGGTTCAAATCAAGTATCCCACATGAAAATTGAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

584

Amino Acids

63.41

Weight (kDa)

6.26

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07340 AT3G07340 AT5G48560 AT5G48560
fragaria_vesca	FvH4_2g18100 FvH4_2g18100
malus_domestica	MD05G1165800.v1.1 MD10G1156100.v1.1
prunus_persica	Prupe.8G193900_v2.0.a1 Prupe.8G193900_v2.0.a1
pyrus_communis	pycom05g15450 pycom10g13430
rosa_chinensis	RchiOBHm_Chr6g0283511
rosa_laevigata	RLG00000012821
rosa_multiflora	Rmu_sc0004959.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185480
rosa_rugosa	Rorug06G0154900 Rorug06G0155000
rosa_samantha	Rh6AG267200 Rh6BG269700 Rh6CG269500 Rh6DG263000
rosa_wichuraiana	Rw6G023130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1310
AccB7I	CCANNNNNTGG	2 cut(s)	1601, 1640
AciI	CCGC	4 cut(s)	96, 117, 245, 338
AclWI	GGATC	3 cut(s)	486, 763, 807
AcoI	YGGCCR	1 cut(s)	1489
AcsI	RAATTY	6 cut(s)	253, 360, 532, 587, 784, 898
AdeI	CACNNNGTG	1 cut(s)	1601
AfaI	GTAC	1 cut(s)	1260
AfiI	CCNNNNNNNGG	4 cut(s)	512, 859, 1601, 1640
AflII	CTTAAG	1 cut(s)	743
AjnI	CCWGG	4 cut(s)	562, 902, 1261, 1376
Alw21I	GWGCWC	2 cut(s)	323, 1749
Alw26I	GTCTC	1 cut(s)	857
AlwI	GGATC	3 cut(s)	486, 763, 807
Ama87I	CYCGRG	2 cut(s)	720, 822
AoxI	GGCC	1 cut(s)	1489
ApeKI	GCWGC	8 cut(s)	502, 581, 654, 657, 676, 732, 793, 1611
ApoI	RAATTY	6 cut(s)	253, 360, 532, 587, 784, 898
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
Asp700I	GAANNNNTTC	2 cut(s)	1419, 1620
AspLEI	GCGC	1 cut(s)	1500
AspS9I	GGNCC	2 cut(s)	1210, 1546
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	144, 338, 1655
AvaI	CYCGRG	2 cut(s)	720, 822
AvaII	GGWCC	2 cut(s)	1210, 1546
BalI	TGGCCA	1 cut(s)	1491
BanII	GRGCYC	2 cut(s)	323, 1749
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	323, 1749
BbvI	GCAGC	8 cut(s)	489, 568, 663, 666, 669, 744, 780, 1623
BccI	CCATC	3 cut(s)	479, 970, 1706
BceAI	ACGGC	1 cut(s)	138
BciT130I	CCWGG	4 cut(s)	564, 904, 1263, 1378
BciVI	GTATCC	2 cut(s)	1069, 1738
BclI	TGATCA	2 cut(s)	282, 1045
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	857
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	2 cut(s)	794, 1517
BfoI	RGCGCY	1 cut(s)	1501
BfrI	CTTAAG	1 cut(s)	743
BfuI	GTATCC	2 cut(s)	1069, 1738
BglI	GCCNNNNNGGC	1 cut(s)	76
BglII	AGATCT	3 cut(s)	330, 686, 1252
BlpI	GCTNAGC	1 cut(s)	461
Bme1390I	CCNGG	5 cut(s)	242, 564, 904, 1263, 1378
Bme18I	GGWCC	2 cut(s)	1210, 1546
BmeT110I	CYCGRG	2 cut(s)	720, 822
BmgT120I	GGNCC	2 cut(s)	1210, 1546
BmiI	GGNNCC	3 cut(s)	942, 1211, 1548
BmrFI	CCNGG	5 cut(s)	242, 564, 904, 1263, 1378
BmrI	ACTGGG	1 cut(s)	187
BmsI	GCATC	3 cut(s)	257, 1387, 1572
BmuI	ACTGGG	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	1334, 1366
Bpu10I	CCTNAGC	3 cut(s)	456, 936, 1134
Bpu1102I	GCTNAGC	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	242
BsaWI	WCCGGW	3 cut(s)	129, 154, 323
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 310, 340, 854, 884
Bsc4I	CCNNNNNNNGG	4 cut(s)	512, 859, 1601, 1640
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	4 cut(s)	182, 1092, 1123, 1285
Bse3DI	GCAATG	1 cut(s)	969
BseBI	CCWGG	4 cut(s)	564, 904, 1263, 1378
BseGI	GGATG	8 cut(s)	105, 201, 956, 1242, 1402, 1447, 1587, 1717
BseLI	CCNNNNNNNGG	4 cut(s)	512, 859, 1601, 1640
BseMI	GCAATG	1 cut(s)	969
BseNI	ACTGG	4 cut(s)	182, 1092, 1123, 1285
BseRI	GAGGAG	1 cut(s)	1085
BseXI	GCAGC	8 cut(s)	489, 568, 663, 666, 669, 744, 780, 1623
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	1491
BsiEI	CGRYCG	1 cut(s)	96
BsiHKAI	GWGCWC	2 cut(s)	323, 1749
BsiHKCI	CYCGRG	2 cut(s)	720, 822
BsiSI	CCGG	5 cut(s)	71, 130, 155, 242, 324
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	4 cut(s)	512, 859, 1601, 1640
BsmAI	GTCTC	1 cut(s)	857
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	1620
BsnI	GGCC	1 cut(s)	1491
BsoBI	CYCGRG	2 cut(s)	720, 822
Bsp1286I	GDGCHC	2 cut(s)	323, 1749
Bsp1720I	GCTNAGC	1 cut(s)	461
Bsp19I	CCATGG	2 cut(s)	99, 888
BspACI	CCGC	4 cut(s)	96, 117, 245, 338
BspANI	GGCC	1 cut(s)	1491
BspLI	GGNNCC	3 cut(s)	942, 1211, 1548
BspMAI	CTGCAG	1 cut(s)	798
BspPI	GGATC	3 cut(s)	486, 763, 807
BspTI	CTTAAG	1 cut(s)	743
BsrDI	GCAATG	1 cut(s)	969
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	4 cut(s)	182, 1092, 1123, 1285
BssAI	RCCGGY	1 cut(s)	70
BssT1I	CCWWGG	5 cut(s)	99, 888, 924, 1143, 1576
Bst2UI	CCWGG	4 cut(s)	564, 904, 1263, 1378
Bst6I	CTCTTC	1 cut(s)	1210
BstAFI	CTTAAG	1 cut(s)	743
BstC8I	GCNNGC	5 cut(s)	72, 412, 467, 1022, 1502
BstDSI	CCRYGG	3 cut(s)	99, 120, 888
BstF5I	GGATG	8 cut(s)	105, 201, 956, 1242, 1402, 1447, 1587, 1717
BstH2I	RGCGCY	1 cut(s)	1501
BstHHI	GCGC	1 cut(s)	1500
BstMAI	GTCTC	1 cut(s)	857
BstMCI	CGRYCG	1 cut(s)	96
BstNI	CCWGG	4 cut(s)	564, 904, 1263, 1378
BstSCI	CCNGG	5 cut(s)	240, 562, 902, 1261, 1376
BstSFI	CTRYAG	2 cut(s)	794, 1517
BstV1I	GCAGC	8 cut(s)	489, 568, 663, 666, 669, 744, 780, 1623
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	4 cut(s)	330, 686, 755, 1252
BstXI	CCANNNNNNTGG	2 cut(s)	889, 1577
BstYI	RGATCY	4 cut(s)	330, 686, 755, 1252
BsuI	GTATCC	2 cut(s)	1069, 1738
BsuRI	GGCC	1 cut(s)	1491
BtgI	CCRYGG	3 cut(s)	99, 120, 888
BtsCI	GGATG	8 cut(s)	105, 201, 956, 1242, 1402, 1447, 1587, 1717
BtsI	GCAGTG	1 cut(s)	1548
BtsIMutI	CAGTG	5 cut(s)	1182, 1234, 1278, 1548, 1606
Cac8I	GCNNGC	5 cut(s)	72, 412, 467, 1022, 1502
CfoI	GCGC	1 cut(s)	1500
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	1210, 1546
Csp6I	GTAC	1 cut(s)	1259
CviQI	GTAC	1 cut(s)	1259
DraIII	CACNNNGTG	1 cut(s)	1601
EaeI	YGGCCR	1 cut(s)	1489
Eam1104I	CTCTTC	1 cut(s)	1210
EarI	CTCTTC	1 cut(s)	1210
Ecl136II	GAGCTC	2 cut(s)	321, 1747
Eco130I	CCWWGG	5 cut(s)	99, 888, 924, 1143, 1576
Eco24I	GRGCYC	2 cut(s)	323, 1749
Eco47I	GGWCC	2 cut(s)	1210, 1546
Eco53kI	GAGCTC	2 cut(s)	321, 1747
Eco88I	CYCGRG	2 cut(s)	720, 822
EcoICRI	GAGCTC	2 cut(s)	321, 1747
EcoRI	GAATTC	4 cut(s)	360, 532, 784, 898
EcoRII	CCWGG	4 cut(s)	562, 902, 1261, 1376
EcoT14I	CCWWGG	5 cut(s)	99, 888, 924, 1143, 1576
EcoT38I	GRGCYC	2 cut(s)	323, 1749
ErhI	CCWWGG	5 cut(s)	99, 888, 924, 1143, 1576
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	1 cut(s)	194
FbaI	TGATCA	2 cut(s)	282, 1045
FokI	GGATG	8 cut(s)	92, 188, 943, 1249, 1409, 1434, 1594, 1724
FriOI	GRGCYC	2 cut(s)	323, 1749
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	1 cut(s)	1499
HaeII	RGCGCY	1 cut(s)	1501
HaeIII	GGCC	1 cut(s)	1491
HapII	CCGG	5 cut(s)	71, 130, 155, 242, 324
HhaI	GCGC	1 cut(s)	1500
Hin6I	GCGC	1 cut(s)	1498
HinP1I	GCGC	1 cut(s)	1498
HindIII	AAGCTT	3 cut(s)	302, 713, 1241
HinfI	GANTC	4 cut(s)	30, 212, 830, 1466
HpaII	CCGG	5 cut(s)	71, 130, 155, 242, 324
HphI	GGTGA	3 cut(s)	144, 338, 1655
Hpy166II	GTNNAC	2 cut(s)	1372, 1546
Hpy188I	TCNGA	6 cut(s)	145, 222, 287, 762, 844, 1214
Hpy188III	TCNNGA	4 cut(s)	91, 822, 824, 1250
Hpy8I	GTNNAC	2 cut(s)	1372, 1546
HpyAV	CCTTC	2 cut(s)	1164, 1610
HpyCH4IV	ACGT	1 cut(s)	1333
HpyCH4V	TGCA	8 cut(s)	410, 572, 772, 796, 1010, 1124, 1585, 1657
HpySE526I	ACGT	1 cut(s)	1333
HspAI	GCGC	1 cut(s)	1498
KroI	GCCGGC	1 cut(s)	70
KroNI	GCCGGC	1 cut(s)	72
Ksp22I	TGATCA	2 cut(s)	282, 1045
LmnI	GCTCC	6 cut(s)	318, 326, 603, 609, 940, 1538
Lsp1109I	GCAGC	8 cut(s)	489, 568, 663, 666, 669, 744, 780, 1623
LweI	GCATC	3 cut(s)	257, 1387, 1572
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	1 cut(s)	1333
MaeIII	GTNAC	4 cut(s)	150, 1268, 1276, 1587
MboII	GAAGA	8 cut(s)	54, 75, 228, 502, 1227, 1234, 1238, 1658
MflI	RGATCY	4 cut(s)	330, 686, 755, 1252
MhlI	GDGCHC	2 cut(s)	323, 1749
MlsI	TGGCCA	1 cut(s)	1491
MluNI	TGGCCA	1 cut(s)	1491
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	282
Mox20I	TGGCCA	1 cut(s)	1491
MroNI	GCCGGC	1 cut(s)	70
MroXI	GAANNNNTTC	2 cut(s)	1419, 1620
MscI	TGGCCA	1 cut(s)	1491
MseI	TTAA	3 cut(s)	744, 993, 1062
Msp20I	TGGCCA	1 cut(s)	1491
MspA1I	CMGCKG	1 cut(s)	557
MspCI	CTTAAG	1 cut(s)	743
MspI	CCGG	5 cut(s)	71, 130, 155, 242, 324
MspR9I	CCNGG	5 cut(s)	242, 564, 904, 1263, 1378
Mva1269I	GAATGC	1 cut(s)	1620
MvaI	CCWGG	4 cut(s)	564, 904, 1263, 1378
NaeI	GCCGGC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	2 cut(s)	99, 888
NgoMIV	GCCGGC	1 cut(s)	70
NlaIV	GGNNCC	3 cut(s)	942, 1211, 1548
NmeAIII	GCCGAG	1 cut(s)	1451
NmuCI	GTSAC	2 cut(s)	150, 1276
PaeR7I	CTCGAG	1 cut(s)	822
PctI	GAATGC	1 cut(s)	1620
PdiI	GCCGGC	1 cut(s)	72
PdmI	GAANNNNTTC	2 cut(s)	1419, 1620
PfeI	GAWTC	3 cut(s)	30, 830, 1466
PflMI	CCANNNNNTGG	2 cut(s)	1601, 1640
PfoI	TCCNGGA	1 cut(s)	902
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	1310
Psp124BI	GAGCTC	2 cut(s)	323, 1749
Psp6I	CCWGG	4 cut(s)	562, 902, 1261, 1376
PspGI	CCWGG	4 cut(s)	562, 902, 1261, 1376
PspN4I	GGNNCC	3 cut(s)	942, 1211, 1548
PspPI	GGNCC	2 cut(s)	1210, 1546
PstI	CTGCAG	1 cut(s)	798
PsuI	RGATCY	4 cut(s)	330, 686, 755, 1252
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	1 cut(s)	1260
RsaNI	GTAC	1 cut(s)	1259
SacI	GAGCTC	2 cut(s)	323, 1749
SaqAI	TTAA	3 cut(s)	744, 993, 1062
Sau96I	GGNCC	2 cut(s)	1210, 1546
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	5 cut(s)	242, 564, 904, 1263, 1378
SduI	GDGCHC	2 cut(s)	323, 1749
SfaNI	GCATC	3 cut(s)	257, 1387, 1572
SfcI	CTRYAG	2 cut(s)	794, 1517
Sfr274I	CTCGAG	1 cut(s)	822
SinI	GGWCC	2 cut(s)	1210, 1546
SlaI	CTCGAG	1 cut(s)	822
SmlI	CTYRAG	2 cut(s)	743, 822
SmoI	CTYRAG	2 cut(s)	743, 822
SsiI	CCGC	4 cut(s)	96, 117, 245, 338
SspI	AATATT	2 cut(s)	1419, 1455
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	2 cut(s)	323, 1749
StyD4I	CCNGG	5 cut(s)	240, 562, 902, 1261, 1376
StyI	CCWWGG	5 cut(s)	99, 888, 924, 1143, 1576
TaiI	ACGT	1 cut(s)	1336
TaqI	TCGA	6 cut(s)	92, 210, 728, 802, 823, 1341
TauI	GCSGC	2 cut(s)	248, 340
TfiI	GAWTC	3 cut(s)	30, 830, 1466
Tru1I	TTAA	3 cut(s)	744, 993, 1062
Tru9I	TTAA	3 cut(s)	744, 993, 1062
TscAI	CASTG	5 cut(s)	1189, 1234, 1285, 1548, 1606
TseFI	GTSAC	2 cut(s)	150, 1276
TseI	GCWGC	8 cut(s)	502, 581, 654, 657, 676, 732, 793, 1611
Tsp45I	GTSAC	2 cut(s)	150, 1276
TspRI	CASTG	5 cut(s)	1189, 1234, 1285, 1548, 1606
Van91I	CCANNNNNTGG	2 cut(s)	1601, 1640
Vha464I	CTTAAG	1 cut(s)	743
VpaK11BI	GGWCC	2 cut(s)	1210, 1546
XapI	RAATTY	6 cut(s)	253, 360, 532, 587, 784, 898
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1669, 1676
XhoI	CTCGAG	1 cut(s)	822
XmnI	GAANNNNTTC	2 cut(s)	1419, 1620
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.