transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07340 AT3G07340 AT5G48560 AT5G48560 |
| fragaria_vesca | FvH4_2g18100 FvH4_2g18100 |
| malus_domestica | MD05G1165800.v1.1 MD10G1156100.v1.1 |
| prunus_persica | Prupe.8G193900_v2.0.a1 Prupe.8G193900_v2.0.a1 |
| pyrus_communis | pycom05g15450 pycom10g13430 |
| rosa_chinensis | RchiOBHm_Chr6g0283511 |
| rosa_laevigata | RLG00000012821 |
| rosa_multiflora | Rmu_sc0004959.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00185480 |
| rosa_rugosa | Rorug06G0154900 Rorug06G0155000 |
| rosa_samantha | Rh6AG267200 Rh6BG269700 Rh6CG269500 Rh6DG263000 |
| rosa_wichuraiana | Rw6G023130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 46, 1261 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2443, 3166 |
| AccII | CGCG | 3 cut(s) | 38, 2528, 2602 |
| AccIII | TCCGGA | 1 cut(s) | 2244 |
| AclI | AACGTT | 1 cut(s) | 3229 |
| AclWI | GGATC | 2 cut(s) | 1787, 1832 |
| AcoI | YGGCCR | 3 cut(s) | 223, 2059, 3780 |
| AcsI | RAATTY | 6 cut(s) | 56, 1354, 1932, 2544, 3295, 3335 |
| AcuI | CTGAAG | 2 cut(s) | 370, 2534 |
| AcyI | GRCGYC | 1 cut(s) | 3424 |
| AdeI | CACNNNGTG | 1 cut(s) | 761 |
| AfaI | GTAC | 5 cut(s) | 253, 1404, 1812, 2154, 2582 |
| AflII | CTTAAG | 2 cut(s) | 413, 2024 |
| AflIII | ACRYGT | 2 cut(s) | 36, 755 |
| AgeI | ACCGGT | 1 cut(s) | 1026 |
| AjiI | CACGTC | 2 cut(s) | 758, 784 |
| AjnI | CCWGG | 2 cut(s) | 1264, 2178 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2469, 2501 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 642, 674 |
| Alw21I | GWGCWC | 5 cut(s) | 1067, 1237, 1948, 2719, 3154 |
| Alw26I | GTCTC | 5 cut(s) | 306, 1771, 2109, 3112, 3833 |
| Alw44I | GTGCAC | 2 cut(s) | 1063, 1944 |
| AlwI | GGATC | 2 cut(s) | 1787, 1832 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1705 |
| Ama87I | CYCGRG | 2 cut(s) | 1252, 3900 |
| Aor13HI | TCCGGA | 1 cut(s) | 2244 |
| ApaLI | GTGCAC | 2 cut(s) | 1063, 1944 |
| ApeKI | GCWGC | 5 cut(s) | 1583, 2135, 2138, 2346, 3317 |
| ApoI | RAATTY | 6 cut(s) | 56, 1354, 1932, 2544, 3295, 3335 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 773, 805 |
| AseI | ATTAAT | 1 cut(s) | 3051 |
| AsiGI | ACCGGT | 1 cut(s) | 1026 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 635, 953, 1701 |
| AspLEI | GCGC | 2 cut(s) | 2285, 3796 |
| AsuC2I | CCSGG | 7 cut(s) | 131, 214, 1253, 1254, 1554, 3020, 3455 |
| AsuII | TTCGAA | 3 cut(s) | 645, 2376, 2494 |
| AvaI | CYCGRG | 2 cut(s) | 1252, 3900 |
| AvaII | GGWCC | 8 cut(s) | 241, 353, 434, 481, 1486, 2040, 2242, 2737 |
| AxyI | CCTNAGG | 1 cut(s) | 1134 |
| BaeGI | GKGCMC | 3 cut(s) | 1067, 1554, 1948 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1386, 1419 |
| BalI | TGGCCA | 2 cut(s) | 2061, 3782 |
| BanI | GGYRCC | 2 cut(s) | 46, 1261 |
| BanII | GRGCYC | 3 cut(s) | 1237, 1645, 3154 |
| Bbv12I | GWGCWC | 5 cut(s) | 1067, 1237, 1948, 2719, 3154 |
| BbvCI | CCTCAGC | 2 cut(s) | 1146, 1902 |
| BbvI | GCAGC | 5 cut(s) | 1570, 2122, 2150, 2333, 3304 |
| BceAI | ACGGC | 2 cut(s) | 238, 397 |
| BciT130I | CCWGG | 2 cut(s) | 1266, 2180 |
| BciVI | GTATCC | 1 cut(s) | 2912 |
| BclI | TGATCA | 2 cut(s) | 568, 3460 |
| BcnI | CCSGG | 7 cut(s) | 131, 214, 1253, 1254, 1554, 3020, 3455 |
| BcoDI | GTCTC | 5 cut(s) | 306, 1771, 2109, 3112, 3833 |
| BfmI | CTRYAG | 2 cut(s) | 2136, 2622 |
| BfoI | RGCGCY | 1 cut(s) | 2286 |
| BfrI | CTTAAG | 2 cut(s) | 413, 2024 |
| BfuI | GTATCC | 1 cut(s) | 2912 |
| BglII | AGATCT | 5 cut(s) | 402, 1593, 2031, 3011, 3683 |
| BisI | GCNGC | 7 cut(s) | 1508, 1584, 2136, 2139, 2286, 2347, 3318 |
| BlpI | GCTNAGC | 1 cut(s) | 3969 |
| BlsI | GCNGC | 7 cut(s) | 1509, 1585, 2137, 2140, 2287, 2348, 3319 |
| Bme1390I | CCNGG | 9 cut(s) | 131, 214, 1253, 1254, 1266, 1554, 2180, 3020, 3455 |
| Bme18I | GGWCC | 8 cut(s) | 241, 353, 434, 481, 1486, 2040, 2242, 2737 |
| BmeT110I | CYCGRG | 2 cut(s) | 1252, 3900 |
| BmgBI | CACGTC | 2 cut(s) | 758, 784 |
| BmrFI | CCNGG | 9 cut(s) | 131, 214, 1253, 1254, 1266, 1554, 2180, 3020, 3455 |
| BmrI | ACTGGG | 1 cut(s) | 524 |
| BmsI | GCATC | 5 cut(s) | 353, 709, 1185, 1742, 2608 |
| BmuI | ACTGGG | 1 cut(s) | 524 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1898, 1930 |
| BpmI | CTGGAG | 4 cut(s) | 117, 718, 2165, 2766 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1146, 1902, 1939 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3969 |
| Bpu14I | TTCGAA | 3 cut(s) | 645, 2376, 2494 |
| BpuEI | CTTGAG | 4 cut(s) | 1223, 1631, 3362, 3724 |
| BpuMI | CCSGG | 7 cut(s) | 131, 214, 1253, 1254, 1554, 3020, 3455 |
| Bsa29I | ATCGAT | 2 cut(s) | 493, 3705 |
| BsaAI | YACGTR | 2 cut(s) | 2684, 3494 |
| BsaHI | GRCGYC | 1 cut(s) | 3424 |
| BsaJI | CCNNGG | 6 cut(s) | 296, 1252, 2179, 2214, 2600, 2741 |
| BsaWI | WCCGGW | 4 cut(s) | 868, 1026, 2244, 2557 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 642, 672, 799, 829, 2444, 2474, 3468, 3498 |
| Bse118I | RCCGGY | 2 cut(s) | 1026, 2385 |
| Bse1I | ACTGG | 5 cut(s) | 356, 530, 1632, 2883, 3068 |
| Bse21I | CCTNAGG | 1 cut(s) | 1134 |
| Bse3DI | GCAATG | 1 cut(s) | 2716 |
| BseAI | TCCGGA | 1 cut(s) | 2244 |
| BseBI | CCWGG | 2 cut(s) | 1266, 2180 |
| BseCI | ATCGAT | 2 cut(s) | 493, 3705 |
| BseDI | CCNNGG | 6 cut(s) | 296, 1252, 2179, 2214, 2600, 2741 |
| BseMI | GCAATG | 1 cut(s) | 2716 |
| BseMII | CTCAG | 9 cut(s) | 1137, 1148, 1323, 1840, 1893, 1953, 2184, 3139, 3960 |
| BseNI | ACTGG | 5 cut(s) | 356, 530, 1632, 2883, 3068 |
| BseRI | GAGGAG | 3 cut(s) | 1100, 1919, 2934 |
| BseSI | GKGCMC | 3 cut(s) | 1067, 1554, 1948 |
| BseXI | GCAGC | 5 cut(s) | 1570, 2122, 2150, 2333, 3304 |
| BseYI | CCCAGC | 2 cut(s) | 3584, 3977 |
| Bsh1236I | CGCG | 3 cut(s) | 38, 2528, 2602 |
| BshNI | GGYRCC | 2 cut(s) | 46, 1261 |
| BshTI | ACCGGT | 1 cut(s) | 1026 |
| BshVI | ATCGAT | 2 cut(s) | 493, 3705 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1067, 1237, 1948, 2719, 3154 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1252, 3900 |
| BslFI | GGGAC | 7 cut(s) | 113, 404, 1428, 1710, 1836, 2426, 2750 |
| BsmAI | GTCTC | 5 cut(s) | 306, 1771, 2109, 3112, 3833 |
| BsmFI | GGGAC | 7 cut(s) | 113, 404, 1428, 1710, 1836, 2426, 2750 |
| BsmI | GAATGC | 2 cut(s) | 605, 677 |
| BsoBI | CYCGRG | 2 cut(s) | 1252, 3900 |
| Bsp119I | TTCGAA | 3 cut(s) | 645, 2376, 2494 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1067, 1237, 1554, 1645, 1948, 2719, 3154 |
| Bsp13I | TCCGGA | 1 cut(s) | 2244 |
| Bsp1407I | TGTACA | 1 cut(s) | 2580 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3969 |
| Bsp68I | TCGCGA | 1 cut(s) | 2528 |
| BspCNI | CTCAG | 9 cut(s) | 1138, 1147, 1324, 1839, 1894, 1952, 2185, 3138, 3961 |
| BspDI | ATCGAT | 2 cut(s) | 493, 3705 |
| BspEI | TCCGGA | 1 cut(s) | 2244 |
| BspFNI | CGCG | 3 cut(s) | 38, 2528, 2602 |
| BspMAI | CTGCAG | 1 cut(s) | 2140 |
| BspPI | GGATC | 2 cut(s) | 1787, 1832 |
| BspQI | GCTCTTC | 1 cut(s) | 3142 |
| BspT104I | TTCGAA | 3 cut(s) | 645, 2376, 2494 |
| BspT107I | GGYRCC | 2 cut(s) | 46, 1261 |
| BspTI | CTTAAG | 2 cut(s) | 413, 2024 |
| BsrDI | GCAATG | 1 cut(s) | 2716 |
| BsrFI | RCCGGY | 2 cut(s) | 1026, 2385 |
| BsrGI | TGTACA | 1 cut(s) | 2580 |
| BsrI | ACTGG | 5 cut(s) | 356, 530, 1632, 2883, 3068 |
| BssAI | RCCGGY | 2 cut(s) | 1026, 2385 |
| BssECI | CCNNGG | 6 cut(s) | 296, 1252, 2179, 2214, 2600, 2741 |
| BssNI | GRCGYC | 1 cut(s) | 3424 |
| BssT1I | CCWWGG | 1 cut(s) | 296 |
| Bst2UI | CCWGG | 2 cut(s) | 1266, 2180 |
| Bst4CI | ACNGT | 7 cut(s) | 831, 1302, 1344, 1676, 1765, 3619, 3776 |
| Bst6I | CTCTTC | 9 cut(s) | 144, 626, 856, 865, 1215, 1615, 1970, 2243, 3142 |
| BstACI | GRCGYC | 1 cut(s) | 3424 |
| BstAFI | CTTAAG | 2 cut(s) | 413, 2024 |
| BstAUI | TGTACA | 1 cut(s) | 2580 |
| BstBAI | YACGTR | 2 cut(s) | 2684, 3494 |
| BstBI | TTCGAA | 3 cut(s) | 645, 2376, 2494 |
| BstC8I | GCNNGC | 3 cut(s) | 1518, 2526, 2995 |
| BstDSI | CCRYGG | 2 cut(s) | 2600, 2741 |
| BstEII | GGTNACC | 1 cut(s) | 3221 |
| BstFNI | CGCG | 3 cut(s) | 38, 2528, 2602 |
| BstH2I | RGCGCY | 1 cut(s) | 2286 |
| BstHHI | GCGC | 2 cut(s) | 2285, 3796 |
| BstMAI | GTCTC | 5 cut(s) | 306, 1771, 2109, 3112, 3833 |
| BstNI | CCWGG | 2 cut(s) | 1266, 2180 |
| BstNSI | RCATGY | 3 cut(s) | 1313, 1379, 3545 |
| BstPI | GGTNACC | 1 cut(s) | 3221 |
| BstSCI | CCNGG | 9 cut(s) | 129, 212, 1251, 1252, 1264, 1552, 2178, 3018, 3453 |
| BstSFI | CTRYAG | 2 cut(s) | 2136, 2622 |
| BstSLI | GKGCMC | 3 cut(s) | 1067, 1554, 1948 |
| BstSNI | TACGTA | 1 cut(s) | 2684 |
| BstUI | CGCG | 3 cut(s) | 38, 2528, 2602 |
| BstV1I | GCAGC | 5 cut(s) | 1570, 2122, 2150, 2333, 3304 |
| BstX2I | RGATCY | 6 cut(s) | 402, 1593, 1837, 2031, 3011, 3683 |
| BstYI | RGATCY | 6 cut(s) | 402, 1593, 1837, 2031, 3011, 3683 |
| Bsu15I | ATCGAT | 2 cut(s) | 493, 3705 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1134 |
| BsuI | GTATCC | 1 cut(s) | 2912 |
| BsuTUI | ATCGAT | 2 cut(s) | 493, 3705 |
| BtgI | CCRYGG | 2 cut(s) | 2600, 2741 |
| BtgZI | GCGATG | 2 cut(s) | 1338, 1765 |
| BtrI | CACGTC | 2 cut(s) | 758, 784 |
| BtsI | GCAGTG | 3 cut(s) | 290, 2319, 3654 |
| BtsIMutI | CAGTG | 5 cut(s) | 290, 2232, 2319, 2876, 3654 |
| BtuMI | TCGCGA | 1 cut(s) | 2528 |
| Cac8I | GCNNGC | 3 cut(s) | 1518, 2526, 2995 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1705 |
| CfoI | GCGC | 2 cut(s) | 2285, 3796 |
| Cfr10I | RCCGGY | 2 cut(s) | 1026, 2385 |
| Cfr42I | CCGCGG | 1 cut(s) | 2603 |
| Cfr9I | CCCGGG | 1 cut(s) | 1252 |
| ClaI | ATCGAT | 2 cut(s) | 493, 3705 |
| CseI | GACGC | 3 cut(s) | 268, 2043, 3413 |
| Csp6I | GTAC | 5 cut(s) | 252, 1403, 1811, 2153, 2581 |
| CspAI | ACCGGT | 1 cut(s) | 1026 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3759, 3794 |
| CviQI | GTAC | 5 cut(s) | 252, 1403, 1811, 2153, 2581 |
| DraI | TTTAAA | 1 cut(s) | 915 |
| DraIII | CACNNNGTG | 1 cut(s) | 761 |
| EaeI | YGGCCR | 3 cut(s) | 223, 2059, 3780 |
| Eam1104I | CTCTTC | 9 cut(s) | 144, 626, 856, 865, 1215, 1615, 1970, 2243, 3142 |
| EarI | CTCTTC | 9 cut(s) | 144, 626, 856, 865, 1215, 1615, 1970, 2243, 3142 |
| Ecl136II | GAGCTC | 2 cut(s) | 1235, 3152 |
| Eco105I | TACGTA | 1 cut(s) | 2684 |
| Eco130I | CCWWGG | 1 cut(s) | 296 |
| Eco147I | AGGCCT | 3 cut(s) | 185, 1667, 2219 |
| Eco24I | GRGCYC | 3 cut(s) | 1237, 1645, 3154 |
| Eco32I | GATATC | 1 cut(s) | 2984 |
| Eco47I | GGWCC | 8 cut(s) | 241, 353, 434, 481, 1486, 2040, 2242, 2737 |
| Eco53kI | GAGCTC | 2 cut(s) | 1235, 3152 |
| Eco57I | CTGAAG | 2 cut(s) | 370, 2534 |
| Eco81I | CCTNAGG | 1 cut(s) | 1134 |
| Eco88I | CYCGRG | 2 cut(s) | 1252, 3900 |
| Eco91I | GGTNACC | 1 cut(s) | 3221 |
| EcoICRI | GAGCTC | 2 cut(s) | 1235, 3152 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1486, 2040, 2637, 2737 |
| EcoO65I | GGTNACC | 1 cut(s) | 3221 |
| EcoRI | GAATTC | 2 cut(s) | 1354, 2544 |
| EcoRII | CCWGG | 2 cut(s) | 1264, 2178 |
| EcoRV | GATATC | 1 cut(s) | 2984 |
| EcoT14I | CCWWGG | 1 cut(s) | 296 |
| EcoT22I | ATGCAT | 2 cut(s) | 2650, 2667 |
| EcoT38I | GRGCYC | 3 cut(s) | 1237, 1645, 3154 |
| ErhI | CCWWGG | 1 cut(s) | 296 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2018, 2050, 2115, 2147, 2469, 2501 |
| FaqI | GGGAC | 7 cut(s) | 113, 404, 1428, 1710, 1836, 2426, 2750 |
| FauI | CCCGC | 4 cut(s) | 992, 2607, 2727, 3002 |
| FauNDI | CATATG | 2 cut(s) | 3260, 3561 |
| FbaI | TGATCA | 2 cut(s) | 568, 3460 |
| Fnu4HI | GCNGC | 7 cut(s) | 1508, 1584, 2136, 2139, 2286, 2347, 3318 |
| FriOI | GRGCYC | 3 cut(s) | 1237, 1645, 3154 |
| Fsp4HI | GCNGC | 7 cut(s) | 1508, 1584, 2136, 2139, 2286, 2347, 3318 |
| GlaI | GCGC | 2 cut(s) | 2284, 3795 |
| GluI | GCNGC | 7 cut(s) | 1508, 1584, 2136, 2139, 2286, 2347, 3318 |
| GsaI | CCCAGC | 2 cut(s) | 3588, 3981 |
| GsuI | CTGGAG | 4 cut(s) | 117, 718, 2165, 2766 |
| HaeII | RGCGCY | 1 cut(s) | 2286 |
| HgaI | GACGC | 3 cut(s) | 268, 2043, 3413 |
| HhaI | GCGC | 2 cut(s) | 2285, 3796 |
| Hin1I | GRCGYC | 1 cut(s) | 3424 |
| Hin6I | GCGC | 2 cut(s) | 2283, 3794 |
| HinP1I | GCGC | 2 cut(s) | 2283, 3794 |
| HincII | GTYRAC | 3 cut(s) | 20, 963, 1381 |
| HindII | GTYRAC | 3 cut(s) | 20, 963, 1381 |
| HindIII | AAGCTT | 4 cut(s) | 917, 2517, 2862, 3573 |
| HpaI | GTTAAC | 2 cut(s) | 963, 1381 |
| Hpy166II | GTNNAC | 5 cut(s) | 20, 963, 1065, 1381, 1946 |
| Hpy8I | GTNNAC | 5 cut(s) | 20, 963, 1065, 1381, 1946 |
| Hpy99I | CGWCG | 2 cut(s) | 762, 785 |
| HpyCH4III | ACNGT | 7 cut(s) | 831, 1302, 1344, 1676, 1765, 3619, 3776 |
| HpyCH4IV | ACGT | 9 cut(s) | 757, 783, 1558, 2127, 2276, 2683, 3201, 3229, 3493 |
| HpySE526I | ACGT | 9 cut(s) | 757, 783, 1558, 2127, 2276, 2683, 3201, 3229, 3493 |
| Hsp92I | GRCGYC | 1 cut(s) | 3424 |
| HspAI | GCGC | 2 cut(s) | 2283, 3794 |
| KflI | GGGWCCC | 1 cut(s) | 2737 |
| Kpn2I | TCCGGA | 1 cut(s) | 2244 |
| Ksp22I | TGATCA | 2 cut(s) | 568, 3460 |
| KspAI | GTTAAC | 2 cut(s) | 963, 1381 |
| KspI | CCGCGG | 1 cut(s) | 2603 |
| LguI | GCTCTTC | 1 cut(s) | 3142 |
| LmnI | GCTCC | 7 cut(s) | 144, 663, 777, 1115, 1320, 2714, 2921 |
| Lsp1109I | GCAGC | 5 cut(s) | 1570, 2122, 2150, 2333, 3304 |
| LweI | GCATC | 5 cut(s) | 353, 709, 1185, 1742, 2608 |
| MaeII | ACGT | 9 cut(s) | 757, 783, 1558, 2127, 2276, 2683, 3201, 3229, 3493 |
| MflI | RGATCY | 6 cut(s) | 402, 1593, 1837, 2031, 3011, 3683 |
| MhlI | GDGCHC | 7 cut(s) | 1067, 1237, 1554, 1645, 1948, 2719, 3154 |
| MlsI | TGGCCA | 2 cut(s) | 2061, 3782 |
| MluI | ACGCGT | 1 cut(s) | 36 |
| MluNI | TGGCCA | 2 cut(s) | 2061, 3782 |
| MlyI | GAGTC | 4 cut(s) | 842, 1818, 1916, 3835 |
| MmeI | TCCRAC | 5 cut(s) | 567, 1518, 1721, 2354, 2519 |
| Mox20I | TGGCCA | 2 cut(s) | 2061, 3782 |
| Mph1103I | ATGCAT | 2 cut(s) | 2650, 2667 |
| MroI | TCCGGA | 1 cut(s) | 2244 |
| MroXI | GAANNNNTTC | 3 cut(s) | 635, 953, 1701 |
| MscI | TGGCCA | 2 cut(s) | 2061, 3782 |
| MslI | CAYNNNNRTG | 6 cut(s) | 165, 1389, 2260, 3366, 3372, 3468 |
| Msp20I | TGGCCA | 2 cut(s) | 2061, 3782 |
| MspA1I | CMGCKG | 3 cut(s) | 2288, 2602, 2786 |
| MspCI | CTTAAG | 2 cut(s) | 413, 2024 |
| MspR9I | CCNGG | 9 cut(s) | 131, 214, 1253, 1254, 1266, 1554, 2180, 3020, 3455 |
| Mva1269I | GAATGC | 2 cut(s) | 605, 677 |
| MvaI | CCWGG | 2 cut(s) | 1266, 2180 |
| MvnI | CGCG | 3 cut(s) | 38, 2528, 2602 |
| NciI | CCSGG | 7 cut(s) | 131, 214, 1253, 1254, 1554, 3020, 3455 |
| NdeI | CATATG | 2 cut(s) | 3260, 3561 |
| NmeAIII | GCCGAG | 1 cut(s) | 1108 |
| NmuCI | GTSAC | 5 cut(s) | 1393, 2553, 2606, 2813, 3652 |
| NruI | TCGCGA | 1 cut(s) | 2528 |
| NsiI | ATGCAT | 2 cut(s) | 2650, 2667 |
| NspI | RCATGY | 3 cut(s) | 1313, 1379, 3545 |
| NspV | TTCGAA | 3 cut(s) | 645, 2376, 2494 |
| PceI | AGGCCT | 3 cut(s) | 185, 1667, 2219 |
| PciSI | GCTCTTC | 1 cut(s) | 3142 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 601, 1188 |
| PctI | GAATGC | 2 cut(s) | 605, 677 |
| PdmI | GAANNNNTTC | 3 cut(s) | 635, 953, 1701 |
| PfeI | GAWTC | 6 cut(s) | 544, 937, 1049, 1979, 2561, 3954 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2443, 3166 |
| PinAI | ACCGGT | 1 cut(s) | 1026 |
| PkrI | GCNGC | 7 cut(s) | 1509, 1585, 2137, 2140, 2287, 2348, 3319 |
| PleI | GAGTC | 4 cut(s) | 842, 1818, 1915, 3835 |
| PpsI | GAGTC | 4 cut(s) | 842, 1818, 1915, 3835 |
| Ppu21I | YACGTR | 2 cut(s) | 2684, 3494 |
| PpuMI | RGGWCCY | 3 cut(s) | 1486, 2040, 2737 |
| PshBI | ATTAAT | 1 cut(s) | 3051 |
| Psp124BI | GAGCTC | 2 cut(s) | 1237, 3154 |
| Psp1406I | AACGTT | 1 cut(s) | 3229 |
| Psp5II | RGGWCCY | 3 cut(s) | 1486, 2040, 2737 |
| Psp6I | CCWGG | 2 cut(s) | 1264, 2178 |
| PspEI | GGTNACC | 1 cut(s) | 3221 |
| PspFI | CCCAGC | 2 cut(s) | 3584, 3977 |
| PspGI | CCWGG | 2 cut(s) | 1264, 2178 |
| PspPPI | RGGWCCY | 3 cut(s) | 1486, 2040, 2737 |
| PstI | CTGCAG | 1 cut(s) | 2140 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1705 |
| PsuI | RGATCY | 6 cut(s) | 402, 1593, 1837, 2031, 3011, 3683 |
| PvuII | CAGCTG | 1 cut(s) | 2786 |
| RruI | TCGCGA | 1 cut(s) | 2528 |
| RsaI | GTAC | 5 cut(s) | 253, 1404, 1812, 2154, 2582 |
| RsaNI | GTAC | 5 cut(s) | 252, 1403, 1811, 2153, 2581 |
| RseI | CAYNNNNRTG | 6 cut(s) | 165, 1389, 2260, 3366, 3372, 3468 |
| SacI | GAGCTC | 2 cut(s) | 1237, 3154 |
| SacII | CCGCGG | 1 cut(s) | 2603 |
| SapI | GCTCTTC | 1 cut(s) | 3142 |
| SatI | GCNGC | 7 cut(s) | 1508, 1584, 2136, 2139, 2286, 2347, 3318 |
| SchI | GAGTC | 4 cut(s) | 842, 1818, 1916, 3835 |
| ScrFI | CCNGG | 9 cut(s) | 131, 214, 1253, 1254, 1266, 1554, 2180, 3020, 3455 |
| SduI | GDGCHC | 7 cut(s) | 1067, 1237, 1554, 1645, 1948, 2719, 3154 |
| SfaNI | GCATC | 5 cut(s) | 353, 709, 1185, 1742, 2608 |
| SfcI | CTRYAG | 2 cut(s) | 2136, 2622 |
| Sfr303I | CCGCGG | 1 cut(s) | 2603 |
| SfuI | TTCGAA | 3 cut(s) | 645, 2376, 2494 |
| SgrBI | CCGCGG | 1 cut(s) | 2603 |
| SinI | GGWCC | 8 cut(s) | 241, 353, 434, 481, 1486, 2040, 2242, 2737 |
| SmaI | CCCGGG | 1 cut(s) | 1254 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 165, 1389, 2260, 3366, 3372, 3468 |
| SmlI | CTYRAG | 6 cut(s) | 413, 1238, 1646, 2024, 3341, 3739 |
| SmoI | CTYRAG | 6 cut(s) | 413, 1238, 1646, 2024, 3341, 3739 |
| SnaBI | TACGTA | 1 cut(s) | 2684 |
| SseBI | AGGCCT | 3 cut(s) | 185, 1667, 2219 |
| SstI | GAGCTC | 2 cut(s) | 1237, 3154 |
| StuI | AGGCCT | 3 cut(s) | 185, 1667, 2219 |
| StyD4I | CCNGG | 9 cut(s) | 129, 212, 1251, 1252, 1264, 1552, 2178, 3018, 3453 |
| StyI | CCWWGG | 1 cut(s) | 296 |
| TaaI | ACNGT | 7 cut(s) | 831, 1302, 1344, 1676, 1765, 3619, 3776 |
| TaiI | ACGT | 9 cut(s) | 760, 786, 1561, 2130, 2279, 2686, 3204, 3232, 3496 |
| TaqI | TCGA | 9 cut(s) | 493, 645, 1231, 1653, 1897, 2376, 2494, 3529, 3705 |
| TaqII | GACCGA | 1 cut(s) | 2228 |
| TatI | WGTACW | 1 cut(s) | 2580 |
| TauI | GCSGC | 2 cut(s) | 1510, 2288 |
| TfiI | GAWTC | 6 cut(s) | 544, 937, 1049, 1979, 2561, 3954 |
| TscAI | CASTG | 5 cut(s) | 290, 2239, 2319, 2883, 3661 |
| TseFI | GTSAC | 5 cut(s) | 1393, 2553, 2606, 2813, 3652 |
| TseI | GCWGC | 5 cut(s) | 1583, 2135, 2138, 2346, 3317 |
| Tsp45I | GTSAC | 5 cut(s) | 1393, 2553, 2606, 2813, 3652 |
| TspGWI | ACGGA | 4 cut(s) | 980, 1030, 3306, 3752 |
| TspMI | CCCGGG | 1 cut(s) | 1252 |
| TspRI | CASTG | 5 cut(s) | 290, 2239, 2319, 2883, 3661 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2443, 3166 |
| Vha464I | CTTAAG | 2 cut(s) | 413, 2024 |
| VneI | GTGCAC | 2 cut(s) | 1063, 1944 |
| VpaK11BI | GGWCC | 8 cut(s) | 241, 353, 434, 481, 1486, 2040, 2242, 2737 |
| VspI | ATTAAT | 1 cut(s) | 3051 |
| XapI | RAATTY | 6 cut(s) | 56, 1354, 1932, 2544, 3295, 3335 |
| XbaI | TCTAGA | 1 cut(s) | 1883 |
| XceI | RCATGY | 3 cut(s) | 1313, 1379, 3545 |
| XmaI | CCCGGG | 1 cut(s) | 1252 |
| XmnI | GAANNNNTTC | 3 cut(s) | 635, 953, 1701 |
| Zsp2I | ATGCAT | 2 cut(s) | 2650, 2667 |