AT5G50810

Mitochondrial import inner membrane translocase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015070
Physical Location & Seq
Reverse (-)
20675605 .. 20676702
1098 bp
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UTR
Exon/CDS
Intron
AT5G50810.1

Sequence Viewer

Length: 234 bp
ATGGATCCTAGCATGGCAAACAACCCGGAATTGCTTCAATTCCTCGCCCAAGAGAAAGAAAGAGCAATGGTGAACGAAATGGTGTCGAAGATGACAAGTGTGTGCTGGGACAAATGCATCACAAGCGCACCGGGAAGTAAGTTCAGCTCAAGCGAGAGTTCTTGCCTCACTCATTGTGCTCAACGCTACATGGATATGAGTATGATCATCATGAAACGCTTTAATTCGCAGTAA

Protein Analysis

77

Amino Acids

8.75

Weight (kDa)

6.53

Isoelectric Point (pI)

66.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Tim10_DDP PF02953 13 - 75 7e-26 Tim10/DDP family zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50810
fragaria_vesca FvH4_5g08990
malus_domestica MD06G1135800.v1.1 MD14G1151000.v1.1
prunus_persica Prupe.5G146200_v2.0.a1
pyrus_communis pycom06g12700 pycom14g12540
rosa_chinensis RchiOBHm_Chr7g0189291
rosa_multiflora Rmu_sc0004318.1_g000016
rosa_roxburghii Rroxscaffold_3G00265550
rosa_rugosa Rorug06G0496900
rosa_samantha Rh7AG102000 Rh7BG104600 Rh7CG105900 Rh7DG103700
rosa_wichuraiana Rw7G008810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AgsI TTSAA 1 cut(s) 38
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw21I GWGCWC 1 cut(s) 181
AlwI GGATC 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 128
AsuC2I CCSGG 2 cut(s) 26, 132
AsuHPI GGTGA 1 cut(s) 82
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 181
BclI TGATCA 1 cut(s) 204
BcnI CCSGG 2 cut(s) 26, 132
BfaI CTAG 1 cut(s) 9
Bme1390I CCNGG 2 cut(s) 26, 132
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 26, 132
BmsI GCATC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 133
BpuMI CCSGG 2 cut(s) 26, 132
Bse3DI GCAATG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 72
BseYI CCCAGC 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 181
BsiSI CCGG 2 cut(s) 26, 131
BslFI GGGAC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 2 cut(s) 4, 204
BspHI TCATGA 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 72
BssMI GATC 2 cut(s) 4, 204
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 2 cut(s) 7, 207
BstMBI GATC 2 cut(s) 4, 204
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstSCI CCNGG 2 cut(s) 24, 130
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
CciI TCATGA 1 cut(s) 210
CfoI GCGC 1 cut(s) 128
CviAII CATG 3 cut(s) 13, 190, 211
CviJI RGCY 1 cut(s) 147
CviKI_1 RGCY 1 cut(s) 147
DpnI GATC 2 cut(s) 6, 206
DpnII GATC 2 cut(s) 4, 204
EcoT22I ATGCAT 1 cut(s) 119
FaeI CATG 3 cut(s) 16, 193, 214
FaiI YATR 5 cut(s) 14, 191, 197, 203, 212
FaqI GGGAC 1 cut(s) 122
FatI CATG 3 cut(s) 12, 189, 210
FbaI TGATCA 1 cut(s) 204
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 127
GsaI CCCAGC 1 cut(s) 109
HapII CCGG 2 cut(s) 26, 131
HhaI GCGC 1 cut(s) 128
Hin1II CATG 3 cut(s) 16, 193, 214
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HpaII CCGG 2 cut(s) 26, 131
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
Hsp92II CATG 3 cut(s) 16, 193, 214
HspAI GCGC 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 2 cut(s) 4, 204
LpnPI CCDG 3 cut(s) 39, 91, 144
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 9
MalI GATC 2 cut(s) 6, 206
MboI GATC 2 cut(s) 4, 204
MboII GAAGA 1 cut(s) 100
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 3 cut(s) 29, 38, 223
MnlI CCTC 2 cut(s) 53, 176
Mph1103I ATGCAT 1 cut(s) 119
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 2 cut(s) 26, 131
MspR9I CCNGG 2 cut(s) 26, 132
MwoI GCNNNNNNNGC 1 cut(s) 123
NciI CCSGG 2 cut(s) 26, 132
NdeII GATC 2 cut(s) 4, 204
NlaIII CATG 3 cut(s) 16, 193, 214
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 119
PagI TCATGA 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 1 cut(s) 222
Sau3AI GATC 2 cut(s) 4, 204
ScrFI CCNGG 2 cut(s) 26, 132
SduI GDGCHC 1 cut(s) 181
SetI ASST 1 cut(s) 149
SfaNI GCATC 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
Sse9I AATT 3 cut(s) 29, 38, 223
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 24, 130
TaqI TCGA 1 cut(s) 86
TasI AATT 3 cut(s) 29, 38, 223
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.