Rh7DG103700

Mitochondrial import inner membrane translocase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015070
Physical Location & Seq
Forward (+)
8815192 .. 8816779
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG103700.1

Sequence Viewer

Length: 237 bp
ATGGATCCTTCAGTCATGCAAAACCCTGAGCTGGCCAGCATCATAAATCAAGAGCAGCAAAGGGCGATGGTCAATGAGATGGTGGGAAAGCTTACGAGTGCATGCTGGGACAAGTGCATCACCTCTACACCAGGGAGCAAGTTCAGTTCCAGTGAAACAGCTTGCCTCTCAAATTGTGCCCGGCGCTATTTGGATATGAGTATGATTATTATGAAGCGTTTTCAGAACATGCAATGA

Protein Analysis

78

Amino Acids

8.81

Weight (kDa)

7.64

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Tim10_DDP PF02953 14 - 76 2.2e-26 Tim10/DDP family zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50810
fragaria_vesca FvH4_5g08990
malus_domestica MD06G1135800.v1.1 MD14G1151000.v1.1
prunus_persica Prupe.5G146200_v2.0.a1
pyrus_communis pycom06g12700 pycom14g12540
rosa_chinensis RchiOBHm_Chr7g0189291
rosa_multiflora Rmu_sc0004318.1_g000016
rosa_roxburghii Rroxscaffold_3G00265550
rosa_rugosa Rorug06G0496900
rosa_samantha Rh7AG102000 Rh7BG104600 Rh7CG105900 Rh7DG103700
rosa_wichuraiana Rw7G008810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 31
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 3 cut(s) 31, 91, 161
AluI AGCT 3 cut(s) 31, 91, 161
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 181
BalI TGGCCA 1 cut(s) 35
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 61, 73
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 187
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 2 cut(s) 132, 181
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 132, 181
BmsI GCATC 2 cut(s) 48, 126
Bpu10I CCTNAGC 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 150
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 105
BshFI GGCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 181
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 4
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 132
BstC8I GCNNGC 4 cut(s) 33, 37, 103, 163
BstDEI CTNAG 1 cut(s) 27
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 2 cut(s) 105, 232
BstSCI CCNGG 2 cut(s) 130, 179
BstSLI GKGCMC 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 4 cut(s) 33, 37, 103, 163
CfoI GCGC 1 cut(s) 186
CviAII CATG 3 cut(s) 16, 102, 229
CviJI RGCY 4 cut(s) 31, 35, 91, 161
CviKI_1 RGCY 4 cut(s) 31, 35, 91, 161
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 3 cut(s) 19, 105, 232
FaiI YATR 7 cut(s) 17, 44, 103, 197, 203, 212, 230
FaqI GGGAC 1 cut(s) 122
FatI CATG 3 cut(s) 15, 101, 228
Fnu4HI GCNGC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 56
GlaI GCGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 56
GsaI CCCAGC 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 181
HhaI GCGC 1 cut(s) 186
Hin1II CATG 3 cut(s) 19, 105, 232
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 89
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 18
HpyCH4V TGCA 4 cut(s) 19, 101, 117, 232
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 3 cut(s) 19, 105, 232
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 8 cut(s) 17, 39, 49, 91, 117, 144, 163, 194
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 2 cut(s) 48, 126
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 181
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 1 cut(s) 172
MluNI TGGCCA 1 cut(s) 35
MnlI CCTC 2 cut(s) 133, 176
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 2 cut(s) 132, 181
MvaI CCWGG 1 cut(s) 132
NciI CCSGG 1 cut(s) 181
NdeII GATC 1 cut(s) 4
NlaIII CATG 3 cut(s) 19, 105, 232
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 2 cut(s) 105, 232
PaeI GCATGC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 132, 181
SduI GDGCHC 1 cut(s) 181
SetI ASST 4 cut(s) 33, 93, 125, 163
SfaNI GCATC 2 cut(s) 48, 126
SphI GCATGC 1 cut(s) 105
Sse9I AATT 1 cut(s) 172
StyD4I CCNGG 2 cut(s) 130, 179
TasI AATT 1 cut(s) 172
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 227
TspRI CASTG 1 cut(s) 157
XceI RCATGY 2 cut(s) 105, 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.