Prupe.5G146200_v2.0.a1

Mitochondrial import inner membrane translocase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015070
Physical Location & Seq
Forward (+)
13437064 .. 13438596
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G146200.1

Sequence Viewer

Length: 237 bp
ATGGATCCTTCATCAATGAACAACCCTGAGCTCCTTCAGTTCATCAACCAAGAGAAGGAAAGAGCAATGGTGAACGAGATGGTGGGAAAGCTTACAAATGTATGCTGGGACAAGTGCATCACTGGTACGCCCGGGAGCAAGTTCAGTTCCAGTGAATCAGCTTGCCTTGCGAACTGCGCCCGCCGTTATTTGGATATGAGTATGATTATTATGAAGCGTTTTCAGAACATGCAATGA

Protein Analysis

79

Amino Acids

8.9

Weight (kDa)

7.64

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50810
fragaria_vesca FvH4_5g08990
malus_domestica MD06G1135800.v1.1 MD14G1151000.v1.1
prunus_persica Prupe.5G146200_v2.0.a1
pyrus_communis pycom06g12700 pycom14g12540
rosa_chinensis RchiOBHm_Chr7g0189291
rosa_multiflora Rmu_sc0004318.1_g000016
rosa_roxburghii Rroxscaffold_3G00265550
rosa_rugosa Rorug06G0496900
rosa_samantha Rh7AG102000 Rh7BG104600 Rh7CG105900 Rh7DG103700
rosa_wichuraiana Rw7G008810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 181
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 20
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 2 cut(s) 55, 190
AluBI AGCT 3 cut(s) 31, 91, 161
AluI AGCT 3 cut(s) 31, 91, 161
Alw21I GWGCWC 1 cut(s) 33
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 131
AspLEI GCGC 1 cut(s) 179
AsuC2I CCSGG 2 cut(s) 132, 133
AsuHPI GGTGA 1 cut(s) 82
AvaI CYCGRG 1 cut(s) 131
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 33
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 168
BcnI CCSGG 2 cut(s) 132, 133
Bme1390I CCNGG 2 cut(s) 132, 133
BmeT110I CYCGRG 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 132, 133
BmsI GCATC 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 132, 133
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 190
Bse1I ACTGG 2 cut(s) 127, 150
Bse3DI GCAATG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 131
BseLI CCNNNNNNNGG 2 cut(s) 55, 190
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 127, 150
BseYI CCCAGC 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 55, 190
BsmFI GGGAC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 1 cut(s) 181
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 72
BsrI ACTGG 2 cut(s) 127, 150
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 1 cut(s) 4
BstC8I GCNNGC 2 cut(s) 163, 181
BstDEI CTNAG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 2 cut(s) 167, 176
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 2 cut(s) 130, 131
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtsIMutI CAGTG 2 cut(s) 120, 157
Cac8I GCNNGC 2 cut(s) 163, 181
CfoI GCGC 1 cut(s) 179
Cfr9I CCCGGG 1 cut(s) 131
Csp6I GTAC 1 cut(s) 126
CviAII CATG 1 cut(s) 229
CviJI RGCY 3 cut(s) 31, 91, 161
CviKI_1 RGCY 3 cut(s) 31, 91, 161
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Ecl136II GAGCTC 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 33
FaeI CATG 1 cut(s) 232
FaiI YATR 5 cut(s) 103, 197, 203, 212, 230
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 228
FauI CCCGC 1 cut(s) 188
FriOI GRGCYC 1 cut(s) 33
GlaI GCGC 1 cut(s) 178
GsaI CCCAGC 1 cut(s) 109
HapII CCGG 1 cut(s) 132
HhaI GCGC 1 cut(s) 179
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 1 cut(s) 155
HpaII CCGG 1 cut(s) 132
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 225
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 3 cut(s) 18, 44, 49
HpyCH4V TGCA 2 cut(s) 117, 232
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 176
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 1 cut(s) 177
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 2 cut(s) 36, 135
LpnPI CCDG 5 cut(s) 39, 91, 108, 145, 163
LweI GCATC 1 cut(s) 126
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 33
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 2 cut(s) 132, 133
MwoI GCNNNNNNNGC 2 cut(s) 167, 176
NciI CCSGG 2 cut(s) 132, 133
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 232
PfeI GAWTC 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SacI GAGCTC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 132, 133
SduI GDGCHC 1 cut(s) 33
SetI ASST 3 cut(s) 33, 93, 163
SfaNI GCATC 1 cut(s) 126
SmaI CCCGGG 1 cut(s) 133
SsiI CCGC 1 cut(s) 181
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 130, 131
TfiI GAWTC 1 cut(s) 155
TscAI CASTG 2 cut(s) 127, 157
TspDTI ATGAA 3 cut(s) 31, 32, 227
TspMI CCCGGG 1 cut(s) 131
TspRI CASTG 2 cut(s) 127, 157
XceI RCATGY 1 cut(s) 232
XmaI CCCGGG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.