Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015070

Physical Location & Seq

Genomic Coordinates Reverse (-)

5203289 .. 5204824

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGATCCTTCAGTCATGCAAAACTCTGAGATGGCCAACATCATCAGTCAAGAGCAACAAAGAGCGATGATCAATGAGATGGTGGGAAAGCTTACAAGTGCATGCTGGGACAAGTGCATCATGGGTACGCCTGGGAGCAAGTTCAGTTCCAGTGAAACAGCTTGCCTATCAAACTGTGCCCAACGCTATTTGGATATGAGTATGCTTATTATGAAGCGTTTTCAGAACATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

79

Amino Acids

8.81

Weight (kDa)

6.1

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	14 - 76	4.2e-26	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50810
fragaria_vesca	FvH4_5g08990
malus_domestica	MD06G1135800.v1.1 MD14G1151000.v1.1
prunus_persica	Prupe.5G146200_v2.0.a1
pyrus_communis	pycom06g12700 pycom14g12540
rosa_chinensis	RchiOBHm_Chr7g0189291
rosa_multiflora	Rmu_sc0004318.1_g000016
rosa_roxburghii	Rroxscaffold_3G00265550
rosa_rugosa	Rorug06G0496900
rosa_samantha	Rh7AG102000 Rh7BG104600 Rh7CG105900 Rh7DG103700
rosa_wichuraiana	Rw7G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	33
AfaI	GTAC	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	91, 161
AluI	AGCT	2 cut(s)	91, 161
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	4
BccI	CCATC	2 cut(s)	25, 73
BciT130I	CCWGG	1 cut(s)	132
BclI	TGATCA	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	105
BshFI	GGCC	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	4, 69
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	2 cut(s)	4, 69
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	103, 163
BstDEI	CTNAG	1 cut(s)	27
BstKTI	GATC	2 cut(s)	7, 72
BstMBI	GATC	2 cut(s)	4, 69
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	2 cut(s)	105, 232
BstSCI	CCNGG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	103, 163
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	4 cut(s)	16, 102, 121, 229
CviJI	RGCY	3 cut(s)	35, 91, 161
CviKI_1	RGCY	3 cut(s)	35, 91, 161
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	2 cut(s)	6, 71
DpnII	GATC	2 cut(s)	4, 69
EaeI	YGGCCR	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	130
FaeI	CATG	4 cut(s)	19, 105, 124, 232
FaiI	YATR	7 cut(s)	17, 103, 122, 197, 203, 212, 230
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	4 cut(s)	15, 101, 120, 228
FbaI	TGATCA	1 cut(s)	69
GsaI	CCCAGC	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	19, 105, 124, 232
HindIII	AAGCTT	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	28, 225
Hpy188III	TCNNGA	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	4 cut(s)	19, 101, 117, 232
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	4 cut(s)	19, 105, 124, 232
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	4, 69
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	4 cut(s)	91, 117, 144, 163
LweI	GCATC	1 cut(s)	126
MalI	GATC	2 cut(s)	6, 71
MboI	GATC	2 cut(s)	4, 69
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	35
MluNI	TGGCCA	1 cut(s)	35
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	4, 69
NlaIII	CATG	4 cut(s)	19, 105, 124, 232
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	2 cut(s)	105, 232
PaeI	GCATGC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	4, 69
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	2 cut(s)	93, 163
SfaNI	GCATC	1 cut(s)	126
SphI	GCATGC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	176
TscAI	CASTG	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	157
XceI	RCATGY	2 cut(s)	105, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.