Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004318.1

Orthogroup ID

OG0015070

Physical Location & Seq

Genomic Coordinates Reverse (-)

40334 .. 42893

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004318.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgattctcttccagtcgacgaggacgagggtggtgaggctgctgaggttgcaaatctctggggccatggagcctgacataaagccgaactggccagacttggagagaatgaggtcctccgactcgtcgcgaaggttaatatcaatgacacggcgagttgaagggtcgcagctgacgccgtaccagttgaggcagcagtcagtgctggaccaccctcatggttcagactctaacttgaaagcactaaagtccatggatccttcagtcatgcaaaaccctgagctggccagcatcataaatcaagagcagcaaagggcgatggtcaatgagatggtgggaaagcttacgagtgcatgctgggacaagtgcatcacctctgcacctgggagcaagttcagttccagtgaaacagcttgcctctcaaattgtgcccggcgctatttggatatgagtatgattattatgaagcgttttcagaacatgcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

162

Amino Acids

18.48

Weight (kDa)

9.63

Isoelectric Point (pI)

58.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50810
fragaria_vesca	FvH4_5g08990
malus_domestica	MD06G1135800.v1.1 MD14G1151000.v1.1
prunus_persica	Prupe.5G146200_v2.0.a1
pyrus_communis	pycom06g12700 pycom14g12540
rosa_chinensis	RchiOBHm_Chr7g0189291
rosa_multiflora	Rmu_sc0004318.1_g000016
rosa_roxburghii	Rroxscaffold_3G00265550
rosa_rugosa	Rorug06G0496900
rosa_samantha	Rh7AG102000 Rh7BG104600 Rh7CG105900 Rh7DG103700
rosa_wichuraiana	Rw7G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AccII	CGCG	1 cut(s)	130
AclWI	GGATC	2 cut(s)	251, 264
AcoI	YGGCCR	2 cut(s)	92, 285
AcuI	CTGAAG	1 cut(s)	246
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	161, 238
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	4 cut(s)	172, 283, 343, 413
AluI	AGCT	4 cut(s)	172, 283, 343, 413
AlwI	GGATC	2 cut(s)	251, 264
AoxI	GGCC	3 cut(s)	63, 92, 285
ApeKI	GCWGC	4 cut(s)	40, 169, 193, 307
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	3 cut(s)	63, 114, 208
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	2 cut(s)	46, 364
AvaII	GGWCC	2 cut(s)	114, 208
BaeGI	GKGCMC	1 cut(s)	433
BalI	TGGCCA	2 cut(s)	94, 287
BamHI	GGATCC	1 cut(s)	256
BbvCI	CCTCAGC	1 cut(s)	44
BbvI	GCAGC	4 cut(s)	27, 181, 205, 319
BccI	CCATC	2 cut(s)	313, 325
BceAI	ACGGC	2 cut(s)	163, 167
BciT130I	CCWGG	1 cut(s)	384
BcnI	CCSGG	1 cut(s)	433
BfoI	RGCGCY	1 cut(s)	439
BglI	GCCNNNNNGGC	1 cut(s)	91
BisI	GCNGC	4 cut(s)	41, 170, 194, 308
BlsI	GCNGC	4 cut(s)	42, 171, 195, 309
Bme1390I	CCNGG	2 cut(s)	384, 433
Bme18I	GGWCC	2 cut(s)	114, 208
BmgT120I	GGNCC	3 cut(s)	63, 114, 208
BmiI	GGNNCC	3 cut(s)	64, 72, 258
BmrFI	CCNGG	2 cut(s)	384, 433
BmsI	GCATC	2 cut(s)	300, 378
Bpu10I	CCTNAGC	2 cut(s)	44, 279
BpuMI	CCSGG	1 cut(s)	433
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	3 cut(s)	66, 252, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	4 cut(s)	13, 95, 184, 402
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	66, 252, 383
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMII	CTCAG	2 cut(s)	35, 270
BseNI	ACTGG	4 cut(s)	13, 95, 184, 402
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	4 cut(s)	27, 181, 205, 319
BseYI	CCCAGC	1 cut(s)	357
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	3 cut(s)	65, 94, 287
BsiSI	CCGG	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	3 cut(s)	65, 94, 287
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	1 cut(s)	256
Bsp19I	CCATGG	2 cut(s)	66, 252
Bsp68I	TCGCGA	1 cut(s)	130
BspANI	GGCC	3 cut(s)	65, 94, 287
BspCNI	CTCAG	2 cut(s)	36, 271
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	3 cut(s)	64, 72, 258
BspPI	GGATC	2 cut(s)	251, 264
BsrI	ACTGG	4 cut(s)	13, 95, 184, 402
BssECI	CCNNGG	3 cut(s)	66, 252, 383
BssMI	GATC	1 cut(s)	256
BssNI	GRCGYC	1 cut(s)	176
BssT1I	CCWWGG	2 cut(s)	66, 252
Bst2UI	CCWGG	1 cut(s)	384
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstC8I	GCNNGC	4 cut(s)	285, 289, 355, 415
BstDEI	CTNAG	2 cut(s)	44, 279
BstDSI	CCRYGG	2 cut(s)	66, 252
BstFNI	CGCG	1 cut(s)	130
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 91, 175, 202
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	2 cut(s)	357, 484
BstSCI	CCNGG	2 cut(s)	382, 431
BstSLI	GKGCMC	1 cut(s)	433
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	4 cut(s)	27, 181, 205, 319
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	3 cut(s)	65, 94, 287
BtgI	CCRYGG	2 cut(s)	66, 252
BtgZI	GCGATG	1 cut(s)	332
BtsIMutI	CAGTG	2 cut(s)	207, 409
BtuMI	TCGCGA	1 cut(s)	130
Cac8I	GCNNGC	4 cut(s)	285, 289, 355, 415
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	3 cut(s)	63, 114, 208
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	6 cut(s)	67, 218, 253, 268, 354, 481
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	2 cut(s)	44, 279
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EaeI	YGGCCR	2 cut(s)	92, 285
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	66, 252
Eco47I	GGWCC	2 cut(s)	114, 208
Eco57I	CTGAAG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	2 cut(s)	66, 252
ErhI	CCWWGG	2 cut(s)	66, 252
FaeI	CATG	6 cut(s)	70, 221, 256, 271, 357, 484
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	6 cut(s)	66, 217, 252, 267, 353, 480
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	4 cut(s)	41, 170, 194, 308
Fsp4HI	GCNGC	4 cut(s)	41, 170, 194, 308
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	4 cut(s)	41, 170, 194, 308
GsaI	CCCAGC	1 cut(s)	361
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	3 cut(s)	65, 94, 287
HapII	CCGG	1 cut(s)	433
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	438
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	6 cut(s)	70, 221, 256, 271, 357, 484
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	3 cut(s)	4, 122, 227
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	2 cut(s)	46, 364
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	3 cut(s)	121, 226, 477
Hpy188III	TCNNGA	2 cut(s)	129, 302
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	2 cut(s)	22, 130
HpyAV	CCTTC	3 cut(s)	126, 155, 270
HpyCH4V	TGCA	6 cut(s)	52, 271, 353, 369, 380, 484
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 91, 175, 202
HpyF3I	CTNAG	2 cut(s)	44, 279
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	6 cut(s)	70, 221, 256, 271, 357, 484
HspAI	GCGC	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	70, 387
Lsp1109I	GCAGC	4 cut(s)	27, 181, 205, 319
LweI	GCATC	2 cut(s)	300, 378
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	433
MlsI	TGGCCA	2 cut(s)	94, 287
MluCI	AATT	1 cut(s)	424
MluNI	TGGCCA	2 cut(s)	94, 287
MlyI	GAGTC	2 cut(s)	116, 221
MmeI	TCCRAC	1 cut(s)	144
Mox20I	TGGCCA	2 cut(s)	94, 287
MscI	TGGCCA	2 cut(s)	94, 287
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	216
Msp20I	TGGCCA	2 cut(s)	94, 287
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	2 cut(s)	384, 433
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	4 cut(s)	49, 91, 175, 202
NciI	CCSGG	1 cut(s)	433
NcoI	CCATGG	2 cut(s)	66, 252
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	6 cut(s)	70, 221, 256, 271, 357, 484
NlaIV	GGNNCC	3 cut(s)	64, 72, 258
NruI	TCGCGA	1 cut(s)	130
NspI	RCATGY	2 cut(s)	357, 484
PaeI	GCATGC	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	4 cut(s)	42, 171, 195, 309
PleI	GAGTC	2 cut(s)	116, 221
PpsI	GAGTC	2 cut(s)	116, 221
PpuMI	RGGWCCY	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	3 cut(s)	64, 72, 258
PspPI	GGNCC	3 cut(s)	63, 114, 208
PspPPI	RGGWCCY	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	172
RruI	TCGCGA	1 cut(s)	130
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	216
SalI	GTCGAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	4 cut(s)	41, 170, 194, 308
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	3 cut(s)	63, 114, 208
SchI	GAGTC	2 cut(s)	116, 221
ScrFI	CCNGG	2 cut(s)	384, 433
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	9 cut(s)	50, 116, 137, 174, 285, 345, 377, 385, 415
SfaNI	GCATC	2 cut(s)	300, 378
SinI	GGWCC	2 cut(s)	114, 208
SmiMI	CAYNNNNRTG	1 cut(s)	216
SphI	GCATGC	1 cut(s)	357
Sse9I	AATT	1 cut(s)	424
StyD4I	CCNGG	2 cut(s)	382, 431
StyI	CCWWGG	2 cut(s)	66, 252
TaqI	TCGA	1 cut(s)	17
TasI	AATT	1 cut(s)	424
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	2 cut(s)	207, 409
TseI	GCWGC	4 cut(s)	40, 169, 193, 307
TspDTI	ATGAA	1 cut(s)	479
TspRI	CASTG	2 cut(s)	207, 409
VpaK11BI	GGWCC	2 cut(s)	114, 208
XceI	RCATGY	2 cut(s)	357, 484
XmiI	GTMKAC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.