Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007413

Physical Location & Seq

Genomic Coordinates Forward (+)

20936423 .. 20937589

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51545.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGCTACAAATCCACTCTCCGTGTTCCTTCTCCACGAGACCCTATCATCTCTTCTTCACTACCAGAAACCCTAGATTCGCAATCAAATGTCAAAATTCCCAAATCGAATCCGATACAACAGAGGATCCATCTCGTTCAAAGAATTCAAGCTCTTCCGGCGTAGGATTCGGTTCACCGGCGTCTTCTTCTTCGCCGGCTAAGAAATTGAGTGCGGCTACATCGGGAAACAAGAAAGGGAAAGGTAAGAGAGAGGTGAATCGGCGTGCTCCTGTGGAGAAACCTGTGTTCATGAGCGAAGAAGGAGCGGCCAAGGCAGAGGAGCAGAGACAAAACGAAAACGCGTTTCTTCTTACTTGGCTTGGGCTTGGTATCGTCATCCTCATCGAAGGCATTATTCTCGCTGCTTCAGGATTCCTCCCAGAAGAGTTGGATAAGTTGTTTGTGAAGTATGTGTATCCAGTGTTCACTCCATCGGTTGTGTTATTCGTAGCTGGGACAACTGCATATGGAGTTCTGAAGTACATACAGAATGAGAAAATGAAGGGTCAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.21

Weight (kDa)

9.34

Isoelectric Point (pI)

62.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51545
fragaria_vesca	FvH4_7g27960 FvH4_7g27960 FvH4_7g27960 FvH4_7g27960 FvH4_7g27960 FvH4_7g27960
malus_domestica	MD01G1184500.v1.1
prunus_persica	Prupe.2G280700_v2.0.a1 Prupe.2G280700_v2.0.a1 Prupe.2G280700_v2.0.a1
pyrus_communis	pycom01g19610 pycom07g22940
rosa_chinensis	RchiOBHm_Chr1g0374911
rosa_laevigata	RLG00000026707
rosa_multiflora	Rmu_co8480605.1_g000001 Rmu_sc0003145.1_g000009 Rmu_sc0004947.1_g000035
rosa_roxburghii	Rroxscaffold_4G00283180
rosa_rugosa	Rorug01G0385900
rosa_samantha	Rh1AG397400 Rh1BG361300 Rh1CG374900 Rh1DG392300
rosa_wichuraiana	Rw1G035240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	308
AccII	CGCG	1 cut(s)	344
AciI	CCGC	2 cut(s)	215, 308
AclWI	GGATC	2 cut(s)	122, 135
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	2 cut(s)	97, 145
AcuI	CTGAAG	2 cut(s)	393, 539
AcyI	GRCGYC	1 cut(s)	182
AfaI	GTAC	1 cut(s)	524
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	2 cut(s)	141, 150
AluBI	AGCT	2 cut(s)	153, 494
AluI	AGCT	2 cut(s)	153, 494
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	2 cut(s)	34, 322
AlwI	GGATC	2 cut(s)	122, 135
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	2 cut(s)	97, 145
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	168, 268
BamHI	GGATCC	1 cut(s)	127
BauI	CACGAG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	2 cut(s)	139, 481
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciVI	GTATCC	1 cut(s)	468
BcoDI	GTCTC	2 cut(s)	34, 322
BfaI	CTAG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	468
BisI	GCNGC	3 cut(s)	216, 309, 405
BlsI	GCNGC	3 cut(s)	217, 310, 406
BmiI	GGNNCC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	312
Bse118I	RCCGGY	2 cut(s)	178, 196
Bse1I	ACTGG	1 cut(s)	461
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	391
BseYI	CCCAGC	1 cut(s)	494
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	3 cut(s)	159, 179, 197
BslFI	GGGAC	1 cut(s)	511
BsmAI	GTCTC	2 cut(s)	34, 322
BsmFI	GGGAC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	311
Bso31I	GGTCTC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	2 cut(s)	215, 308
BspANI	GGCC	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	344
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	2 cut(s)	122, 135
BspQI	GCTCTTC	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	34
BsrBI	CCGCTC	1 cut(s)	308
BsrFI	RCCGGY	2 cut(s)	178, 196
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	2 cut(s)	178, 196
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	1 cut(s)	127
BssNI	GRCGYC	1 cut(s)	182
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	37
Bst6I	CTCTTC	3 cut(s)	59, 160, 420
BstACI	GRCGYC	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	198, 267
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	378
BstFNI	CGCG	1 cut(s)	344
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	2 cut(s)	34, 322
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 314
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	2 cut(s)	198, 267
CciI	TCATGA	1 cut(s)	291
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	2 cut(s)	178, 196
CseI	GACGC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	7 cut(s)	153, 200, 218, 311, 361, 367, 494
CviKI_1	RGCY	7 cut(s)	153, 200, 218, 311, 361, 367, 494
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	3 cut(s)	59, 160, 420
EarI	CTCTTC	3 cut(s)	59, 160, 420
Eco130I	CCWWGG	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	34
Eco57I	CTGAAG	2 cut(s)	393, 539
EcoRI	GAATTC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	295
FaiI	YATR	5 cut(s)	293, 453, 508, 510, 527
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	1 cut(s)	291
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	3 cut(s)	216, 309, 405
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	3 cut(s)	216, 309, 405
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	216, 309, 405
GsaI	CCCAGC	1 cut(s)	498
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	3 cut(s)	159, 179, 197
HgaI	GACGC	1 cut(s)	171
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	1 cut(s)	295
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	5 cut(s)	78, 110, 168, 259, 414
HpaII	CCGG	3 cut(s)	159, 179, 197
HphI	GGTGA	2 cut(s)	168, 268
Hpy166II	GTNNAC	2 cut(s)	176, 468
Hpy188I	TCNGA	2 cut(s)	115, 519
Hpy188III	TCNNGA	4 cut(s)	225, 292, 411, 551
Hpy8I	GTNNAC	2 cut(s)	176, 468
HpyAV	CCTTC	4 cut(s)	40, 296, 383, 538
HpyCH4V	TGCA	1 cut(s)	506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 314
HpyF3I	CTNAG	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	295
HspAI	GCGC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	196
KroNI	GCCGGC	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	127
LguI	GCTCTTC	1 cut(s)	160
LmnI	GCTCC	3 cut(s)	274, 305, 322
Lsp1109I	GCAGC	1 cut(s)	391
MaeI	CTAG	1 cut(s)	75
MalI	GATC	1 cut(s)	129
MbiI	CCGCTC	1 cut(s)	308
MboI	GATC	1 cut(s)	127
MboII	GAAGA	9 cut(s)	46, 49, 147, 177, 180, 183, 311, 341, 437
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	3 cut(s)	97, 145, 206
MluI	ACGCGT	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	5 cut(s)	118, 247, 313, 392, 428
MroNI	GCCGGC	1 cut(s)	196
MspI	CCGG	3 cut(s)	159, 179, 197
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	159, 314
NaeI	GCCGGC	1 cut(s)	198
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	1 cut(s)	127
NgoMIV	GCCGGC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	129
PagI	TCATGA	1 cut(s)	291
PciSI	GCTCTTC	1 cut(s)	160
PdiI	GCCGGC	1 cut(s)	198
PfeI	GAWTC	5 cut(s)	78, 110, 168, 259, 414
PkrI	GCNGC	3 cut(s)	217, 310, 406
PspFI	CCCAGC	1 cut(s)	494
PspN4I	GGNNCC	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	449, 481
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
SapI	GCTCTTC	1 cut(s)	160
SatI	GCNGC	3 cut(s)	216, 309, 405
Sau3AI	GATC	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	5 cut(s)	155, 247, 258, 286, 496
SgrAI	CRCCGGYG	1 cut(s)	178
Sse9I	AATT	3 cut(s)	97, 145, 206
SsiI	CCGC	2 cut(s)	215, 308
SspMI	CTAG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	312
TaqI	TCGA	2 cut(s)	108, 387
TasI	AATT	3 cut(s)	97, 145, 206
TatI	WGTACW	1 cut(s)	522
TauI	GCSGC	2 cut(s)	218, 311
TfiI	GAWTC	5 cut(s)	78, 110, 168, 259, 414
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	280, 557
TspGWI	ACGGA	1 cut(s)	12
TspRI	CASTG	1 cut(s)	468
XapI	RAATTY	2 cut(s)	97, 145
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.