Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007413

Physical Location & Seq

Genomic Coordinates Forward (+)

18237520 .. 18239039

Gene Structure 1520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCGCTAATTCAGTGTCCCTCTTCATCTCTCACCACCAAGCCCTATCATCATCACCTTCCTCACACTCCTCCGCTGCTTCACTTTTCAACCAGAACCCACTTCACAGTGAAGTCCCAGACCCCATCGGAGCCGTCAAAACCCGCCGCCGAGGCCACCCAGGTCCCACCCAAGAAACCCACCTCAGCCGGGACAGGCTTCGGCCCGCCTCCTCCTTCTTCGGCCAAGCCGAATTCCGCCGCTGATAAGAAGAAAGGGAGGGCGGCGGTGATTCGGAGGTCGCCGGTGGAAAAGCCCCTGCTTTATTCTGAAGAAGATCAGGCTAAGGCCAAAGAGATGGGAACAAATGAGAGCGCTTTTGTTCTCGCTTGGTTGGGGCTCGGCGGCGTCATCCTAGCCCAAGGCCTTCTTCTCGCCGCTTCGGGGTTCCTGCCAGAAGAGTGGGACAAGTTCTTTGTGAAGTATTTATATCCATCTTTTACACCAACAGTCGGCTTGTTTGTTGCTGGAAGTGTTGTATATGGAGTGGTGAAGTATCTGCAGAATGAGGAACTTAAAGGTCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

20.38

Weight (kDa)

9.47

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51545
fragaria_vesca	FvH4_7g27960 FvH4_7g27960 FvH4_7g27960 FvH4_7g27960 FvH4_7g27960 FvH4_7g27960
malus_domestica	MD01G1184500.v1.1
prunus_persica	Prupe.2G280700_v2.0.a1 Prupe.2G280700_v2.0.a1 Prupe.2G280700_v2.0.a1
pyrus_communis	pycom01g19610 pycom07g22940
rosa_chinensis	RchiOBHm_Chr1g0374911
rosa_laevigata	RLG00000026707
rosa_multiflora	Rmu_co8480605.1_g000001 Rmu_sc0003145.1_g000009 Rmu_sc0004947.1_g000035
rosa_roxburghii	Rroxscaffold_4G00283180
rosa_rugosa	Rorug01G0385900
rosa_samantha	Rh1AG397400 Rh1BG361300 Rh1CG374900 Rh1DG392300
rosa_wichuraiana	Rw1G035240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	387
AfeI	AGCGCT	1 cut(s)	355
AfiI	CCNNNNNNNGG	3 cut(s)	189, 423, 491
AgsI	TTSAA	1 cut(s)	90
AjnI	CCWGG	1 cut(s)	159
AjuI	GAANNNNNNNTTGG	2 cut(s)	393, 425
Aor51HI	AGCGCT	1 cut(s)	355
AoxI	GGCC	5 cut(s)	153, 202, 222, 327, 403
ApeKI	GCWGC	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	232
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AspLEI	GCGC	2 cut(s)	7, 356
AspS9I	GGNCC	2 cut(s)	163, 203
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	4 cut(s)	25, 47, 280, 541
AvaII	GGWCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	381
BbvCI	CCTCAGC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	3 cut(s)	133, 331, 481
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	161
BcnI	CCSGG	1 cut(s)	190
BfaI	CTAG	1 cut(s)	395
BfmI	CTRYAG	1 cut(s)	539
BfoI	RGCGCY	2 cut(s)	8, 357
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	6 cut(s)	77, 147, 240, 264, 385, 417
BlsI	GCNGC	6 cut(s)	78, 148, 241, 265, 386, 418
Bme1390I	CCNGG	2 cut(s)	161, 190
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	163, 203
BmiI	GGNNCC	3 cut(s)	132, 165, 428
BmrFI	CCNGG	2 cut(s)	161, 190
Bpu10I	CCTNAGC	2 cut(s)	184, 324
BpuMI	CCSGG	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	3 cut(s)	150, 159, 400
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 423, 491
Bse118I	RCCGGY	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	3 cut(s)	150, 159, 400
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	3 cut(s)	189, 423, 491
BseMII	CTCAG	1 cut(s)	198
BseRI	GAGGAG	2 cut(s)	60, 201
BseXI	GCAGC	1 cut(s)	63
BshFI	GGCC	5 cut(s)	155, 204, 224, 329, 405
BsiSI	CCGG	2 cut(s)	189, 284
BslFI	GGGAC	5 cut(s)	3, 100, 149, 205, 458
BslI	CCNNNNNNNGG	3 cut(s)	189, 423, 491
BsmFI	GGGAC	5 cut(s)	3, 100, 149, 205, 458
BsnI	GGCC	5 cut(s)	155, 204, 224, 329, 405
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	1 cut(s)	316
BspANI	GGCC	5 cut(s)	155, 204, 224, 329, 405
BspCNI	CTCAG	1 cut(s)	197
BspLI	GGNNCC	3 cut(s)	132, 165, 428
BspMAI	CTGCAG	1 cut(s)	543
BsrFI	RCCGGY	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	3 cut(s)	150, 159, 400
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	2 cut(s)	109, 490
Bst6I	CTCTTC	2 cut(s)	28, 432
BstACI	GRCGYC	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	2 cut(s)	184, 324
BstF5I	GGATG	1 cut(s)	390
BstH2I	RGCGCY	2 cut(s)	8, 357
BstHHI	GCGC	2 cut(s)	7, 356
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	2 cut(s)	159, 188
BstSFI	CTRYAG	1 cut(s)	539
BstV1I	GCAGC	1 cut(s)	63
BstXI	CCANNNNNNTGG	2 cut(s)	337, 441
BsuRI	GGCC	5 cut(s)	155, 204, 224, 329, 405
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	20, 114
Cac8I	GCNNGC	1 cut(s)	206
CfoI	GCGC	2 cut(s)	7, 356
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	163, 203
CseI	GACGC	1 cut(s)	376
DdeI	CTNAG	2 cut(s)	184, 324
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	28, 432
EarI	CTCTTC	2 cut(s)	28, 432
EciI	GGCGGA	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	400
Eco147I	AGGCCT	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	163
Eco47III	AGCGCT	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	400
FaiI	YATR	3 cut(s)	469, 520, 522
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FaqI	GGGAC	5 cut(s)	3, 100, 149, 205, 458
FauI	CCCGC	2 cut(s)	151, 213
Fnu4HI	GCNGC	6 cut(s)	77, 147, 240, 264, 385, 417
FokI	GGATG	1 cut(s)	377
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	6 cut(s)	77, 147, 240, 264, 385, 417
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	2 cut(s)	6, 355
GluI	GCNGC	6 cut(s)	77, 147, 240, 264, 385, 417
HaeII	RGCGCY	2 cut(s)	8, 357
HaeIII	GGCC	5 cut(s)	155, 204, 224, 329, 405
HapII	CCGG	2 cut(s)	189, 284
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	2 cut(s)	7, 356
Hin1I	GRCGYC	1 cut(s)	387
Hin6I	GCGC	2 cut(s)	5, 354
HinP1I	GCGC	2 cut(s)	5, 354
HinfI	GANTC	1 cut(s)	271
HpaII	CCGG	2 cut(s)	189, 284
HphI	GGTGA	4 cut(s)	25, 47, 280, 541
Hpy188I	TCNGA	4 cut(s)	130, 276, 310, 564
HpyAV	CCTTC	3 cut(s)	68, 225, 416
HpyCH4III	ACNGT	2 cut(s)	109, 490
HpyCH4V	TGCA	1 cut(s)	541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	184, 324
Hsp92I	GRCGYC	1 cut(s)	387
HspAI	GCGC	2 cut(s)	5, 354
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	395
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	7 cut(s)	15, 210, 262, 323, 326, 401, 449
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	2 cut(s)	9, 232
MseI	TTAA	1 cut(s)	555
MspA1I	CMGCKG	2 cut(s)	76, 242
MspI	CCGG	2 cut(s)	189, 284
MspR9I	CCNGG	2 cut(s)	161, 190
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	1 cut(s)	316
NlaIV	GGNNCC	3 cut(s)	132, 165, 428
NmeAIII	GCCGAG	2 cut(s)	175, 360
PceI	AGGCCT	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	6 cut(s)	78, 148, 241, 265, 386, 418
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	3 cut(s)	132, 165, 428
PspPI	GGNCC	2 cut(s)	163, 203
PspPPI	RGGWCCY	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	543
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	6 cut(s)	77, 147, 240, 264, 385, 417
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	2 cut(s)	163, 203
ScrFI	CCNGG	2 cut(s)	161, 190
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	5 cut(s)	60, 165, 185, 281, 562
SfcI	CTRYAG	1 cut(s)	539
SgrAI	CRCCGGYG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	2 cut(s)	9, 232
SseBI	AGGCCT	1 cut(s)	405
SspMI	CTAG	1 cut(s)	395
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	2 cut(s)	159, 188
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	2 cut(s)	109, 490
TasI	AATT	2 cut(s)	9, 232
TauI	GCSGC	5 cut(s)	149, 242, 266, 387, 419
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	2 cut(s)	20, 114
TseI	GCWGC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	15
TspRI	CASTG	2 cut(s)	20, 114
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	232
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.