Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007413

Physical Location & Seq

Genomic Coordinates Forward (+)

61060888 .. 61062367

Gene Structure 1480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG392300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCGCTATCCTATCATCTTCTTCCTCGGCTCCAATTCACCAAAACGGTGCGTTTCACTGCGAAGTCTCAGACCCCAACAGAGCCGTCGCCCAATGGCGGAGAGGTCCCACAGAAGAAACCCAGTTCCCAAGGGCTGGGATTCGGGTCGTCGGCAGCTTCTGCGAGCAATTCGAGTGTGAGTTCGAAGCAAAAGAAGGGGAGGGCTTCGATTATACGGCGGTCGCCGGTGGAAAAGCCGGTGCTTTTTAGCGAAGAAGATGAGGCTAAGGCGAAGGAGATGGGGAGTAATGAGAGTGCTTTTGTGGTAGCTTGGTTGGTGCTTGGAGGTGTGATTCTAGTTGAAGGTCTTGCTCTTGCTACTTCGGGCTTCCTTCCAGAAGAGTGGGATAAATTATTTGTGAAGTATTTTTATCCATCTTTTACGCCAACAGTCCTCTTGTTCATTGCTGGAACAACAGCATACGGAGTAATAAAGTACCTGCAGAATGAGGAACTCAAAGGTCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.44

Weight (kDa)

9.4

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51545
fragaria_vesca	FvH4_7g27960 FvH4_7g27960 FvH4_7g27960 FvH4_7g27960 FvH4_7g27960 FvH4_7g27960
malus_domestica	MD01G1184500.v1.1
prunus_persica	Prupe.2G280700_v2.0.a1 Prupe.2G280700_v2.0.a1 Prupe.2G280700_v2.0.a1
pyrus_communis	pycom01g19610 pycom07g22940
rosa_chinensis	RchiOBHm_Chr1g0374911
rosa_laevigata	RLG00000026707
rosa_multiflora	Rmu_co8480605.1_g000001 Rmu_sc0003145.1_g000009 Rmu_sc0004947.1_g000035
rosa_roxburghii	Rroxscaffold_4G00283180
rosa_rugosa	Rorug01G0385900
rosa_samantha	Rh1AG397400 Rh1BG361300 Rh1CG374900 Rh1DG392300
rosa_wichuraiana	Rw1G035240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	489
AccB7I	CCANNNNNTGG	1 cut(s)	136
AciI	CCGC	2 cut(s)	99, 220
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	2 cut(s)	98, 136
AgsI	TTSAA	1 cut(s)	344
AluBI	AGCT	2 cut(s)	158, 311
AluI	AGCT	2 cut(s)	158, 311
Alw26I	GTCTC	1 cut(s)	72
AlwNI	CAGNNNCTG	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	31
AsuII	TTCGAA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	2 cut(s)	274, 424
BceAI	ACGGC	2 cut(s)	70, 233
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	482
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	489
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	32, 108
BmrI	ACTGGG	1 cut(s)	117
BmuI	ACTGGG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	26, 130
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 136
Bse118I	RCCGGY	2 cut(s)	226, 238
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	26, 130
BseLI	CCNNNNNNNGG	2 cut(s)	98, 136
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	167
BseYI	CCCAGC	1 cut(s)	136
Bsh1285I	CGRYCG	1 cut(s)	224
BsiEI	CGRYCG	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	227, 239
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	98, 136
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	185
BspACI	CCGC	2 cut(s)	99, 220
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	32, 108
BspMAI	CTGCAG	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	489
BspT104I	TTCGAA	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	2 cut(s)	226, 238
BsrI	ACTGG	1 cut(s)	123
BssAI	RCCGGY	2 cut(s)	226, 238
BssECI	CCNNGG	2 cut(s)	26, 130
BssT1I	CCWWGG	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	49, 433
Bst6I	CTCTTC	1 cut(s)	375
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstBI	TTCGAA	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	2 cut(s)	69, 267
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	72
BstMCI	CGRYCG	1 cut(s)	224
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	482
BstV1I	GCAGC	1 cut(s)	167
BstXI	CCANNNNNNTGG	1 cut(s)	384
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
BveI	ACCTGC	1 cut(s)	489
Cac8I	GCNNGC	1 cut(s)	166
CaiI	CAGNNNCTG	1 cut(s)	161
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	2 cut(s)	226, 238
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	478
CviJI	RGCY	9 cut(s)	31, 85, 136, 158, 206, 238, 266, 311, 369
CviKI_1	RGCY	9 cut(s)	31, 85, 136, 158, 206, 238, 266, 311, 369
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	2 cut(s)	69, 267
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FaiI	YATR	2 cut(s)	215, 463
FaqI	GGGAC	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	156
GsaI	CCCAGC	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	8
HapII	CCGG	2 cut(s)	227, 239
HhaI	GCGC	1 cut(s)	7
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	141, 334
HpaII	CCGG	2 cut(s)	227, 239
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	72, 507
Hpy188III	TCNNGA	1 cut(s)	377
Hpy99I	CGWCG	2 cut(s)	91, 154
HpyAV	CCTTC	4 cut(s)	190, 268, 338, 383
HpyCH4III	ACNGT	2 cut(s)	49, 433
HpyCH4V	TGCA	1 cut(s)	484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	69, 267
HspAI	GCGC	1 cut(s)	5
LmnI	GCTCC	1 cut(s)	36
LpnPI	CCDG	7 cut(s)	122, 136, 240, 252, 390, 435, 494
Lsp1109I	GCAGC	1 cut(s)	167
MaeI	CTAG	1 cut(s)	338
MboII	GAAGA	6 cut(s)	11, 14, 127, 266, 269, 392
MluCI	AATT	3 cut(s)	35, 169, 392
MnlI	CCTC	7 cut(s)	36, 97, 195, 256, 320, 446, 484
MspI	CCGG	2 cut(s)	227, 239
MwoI	GCNNNNNNNGC	1 cut(s)	161
NlaIV	GGNNCC	2 cut(s)	32, 108
NmeAIII	GCCGAG	1 cut(s)	7
NspV	TTCGAA	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	141, 334
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	32, 108
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	486
PstNI	CAGNNNCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
SatI	GCNGC	1 cut(s)	156
Sau96I	GGNCC	1 cut(s)	106
SetI	ASST	7 cut(s)	108, 160, 313, 331, 349, 483, 505
SfcI	CTRYAG	1 cut(s)	482
SfuI	TTCGAA	1 cut(s)	185
SgrAI	CRCCGGYG	1 cut(s)	226
SinI	GGWCC	1 cut(s)	106
Sse9I	AATT	3 cut(s)	35, 169, 392
SsiI	CCGC	2 cut(s)	99, 220
SspMI	CTAG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	2 cut(s)	49, 433
TaqI	TCGA	3 cut(s)	173, 185, 209
TasI	AATT	3 cut(s)	35, 169, 392
TfiI	GAWTC	2 cut(s)	141, 334
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	433
TspGWI	ACGGA	1 cut(s)	480
TspRI	CASTG	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	106
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.