Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007413

Physical Location & Seq

Genomic Coordinates Forward (+)

24068286 .. 24070458

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAACGAAAACTGCGAAAAATCTTTCCCTTCTACCCAGAAACTACTCGAAGCTAGCAGCCGGAAGTTTACTGCTCCGGTTCACTATCCATACACGAATAATAGAATTCACTTCGTCGTGCGGCCGAAAATACACAGAACGGGCAAAAATAAAGCAAATCTTCTACAACGAACTAAACTGAAAATGGCGCTAATTCACAGTCCCTCTTCTCCCACCACCAAACCCTATCATCATCACCTTCCTCACACTCCTCCTCTGCTTCACTTTTCAACCGGAAGCCATTTCACAGTGAAGTCCCAGACGCCATCGGAGCCCTCAAAACCCGCCGCCGAGGCCGCCCAGGTCCCACCCAAGAAACCCACCTCAGCCGGGACAGGCTTCGGCTCTCCTCCTCCTTCTCCGGCCAAGCCAAAAGCGAATCCCGCCGCTGATAAGAAGAAAGGGAACAGGGCTGCGGTGATTCGGAGGTCGCCGGTGGAAAAGCCCCTGCTTTATTCTGAGGAAGATGAGGCCAAGGCCAAAGAGATGGGCACAAATGAGAGCGCTTTTGTTCTTGCTTGGTTGGGGCTCGGCGGTGTTATTCTAGCCCAAGGCCTTATTCTTGCCGCATCGGGCTTCCTGCCAGAAGATTGGGACAAGTTCCTTGTGAAGTATTTATATCCATCTTTTACACCGACAGTTGGCTTGTTTGTTGCTGGAAGTGTTGTATATGGAGCGGTGAAGTATCTGCAGAATGAGGAACTTAAAGGTCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

27.53

Weight (kDa)

9.85

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51545
fragaria_vesca	FvH4_7g27960 FvH4_7g27960 FvH4_7g27960 FvH4_7g27960 FvH4_7g27960 FvH4_7g27960
malus_domestica	MD01G1184500.v1.1
prunus_persica	Prupe.2G280700_v2.0.a1 Prupe.2G280700_v2.0.a1 Prupe.2G280700_v2.0.a1
pyrus_communis	pycom01g19610 pycom07g22940
rosa_chinensis	RchiOBHm_Chr1g0374911
rosa_laevigata	RLG00000026707
rosa_multiflora	Rmu_co8480605.1_g000001 Rmu_sc0003145.1_g000009 Rmu_sc0004947.1_g000035
rosa_roxburghii	Rroxscaffold_4G00283180
rosa_rugosa	Rorug01G0385900
rosa_samantha	Rh1AG397400 Rh1BG361300 Rh1CG374900 Rh1DG392300
rosa_wichuraiana	Rw1G035240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	716
AcoI	YGGCCR	2 cut(s)	122, 402
AcsI	RAATTY	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	302
AfeI	AGCGCT	1 cut(s)	544
AfiI	CCNNNNNNNGG	2 cut(s)	369, 680
AgsI	TTSAA	1 cut(s)	270
AjnI	CCWGG	1 cut(s)	339
AjuI	GAANNNNNNNTTGG	2 cut(s)	582, 614
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Aor51HI	AGCGCT	1 cut(s)	544
AoxI	GGCC	6 cut(s)	122, 333, 402, 510, 516, 592
ApeKI	GCWGC	2 cut(s)	57, 452
ApoI	RAATTY	1 cut(s)	105
AspLEI	GCGC	2 cut(s)	190, 545
AspS9I	GGNCC	1 cut(s)	343
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	3 cut(s)	227, 469, 730
AsuNHI	GCTAGC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	343
BaeGI	GKGCMC	1 cut(s)	533
BanII	GRGCYC	2 cut(s)	315, 570
BbvCI	CCTCAGC	1 cut(s)	364
BbvI	GCAGC	2 cut(s)	69, 439
BccI	CCATC	3 cut(s)	313, 520, 670
BciT130I	CCWGG	1 cut(s)	341
BcnI	CCSGG	1 cut(s)	370
BfaI	CTAG	2 cut(s)	54, 584
BfmI	CTRYAG	1 cut(s)	728
BfoI	RGCGCY	2 cut(s)	191, 546
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	7 cut(s)	58, 122, 327, 336, 426, 453, 606
BlsI	GCNGC	7 cut(s)	59, 123, 328, 337, 427, 454, 607
Bme1390I	CCNGG	2 cut(s)	341, 370
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	2 cut(s)	312, 345
BmrFI	CCNGG	2 cut(s)	341, 370
BmsI	GCATC	1 cut(s)	617
BmtI	GCTAGC	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	370
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	4 cut(s)	330, 339, 513, 589
BsaWI	WCCGGW	2 cut(s)	76, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 680
Bse118I	RCCGGY	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	4 cut(s)	330, 339, 513, 589
BseLI	CCNNNNNNNGG	2 cut(s)	369, 680
BseMII	CTCAG	2 cut(s)	378, 489
BseRI	GAGGAG	4 cut(s)	240, 243, 378, 381
BseSI	GKGCMC	1 cut(s)	533
BseX3I	CGGCCG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	69, 439
Bsh1285I	CGRYCG	1 cut(s)	125
BshFI	GGCC	6 cut(s)	124, 335, 404, 512, 518, 594
BsiEI	CGRYCG	1 cut(s)	125
BsiSI	CCGG	6 cut(s)	61, 77, 273, 369, 401, 473
BslFI	GGGAC	5 cut(s)	186, 280, 329, 385, 647
BslI	CCNNNNNNNGG	2 cut(s)	369, 680
BsmFI	GGGAC	5 cut(s)	186, 280, 329, 385, 647
BsnI	GGCC	6 cut(s)	124, 335, 404, 512, 518, 594
Bsp1286I	GDGCHC	3 cut(s)	315, 533, 570
BspANI	GGCC	6 cut(s)	124, 335, 404, 512, 518, 594
BspCNI	CTCAG	2 cut(s)	377, 490
BspLI	GGNNCC	2 cut(s)	312, 345
BspMAI	CTGCAG	1 cut(s)	732
BspOI	GCTAGC	1 cut(s)	57
BsrBI	CCGCTC	1 cut(s)	716
BsrFI	RCCGGY	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	4 cut(s)	330, 339, 513, 589
BssNI	GRCGYC	1 cut(s)	302
BssT1I	CCWWGG	2 cut(s)	513, 589
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	3 cut(s)	200, 289, 679
Bst6I	CTCTTC	1 cut(s)	211
BstACI	GRCGYC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	364, 498
BstH2I	RGCGCY	2 cut(s)	191, 546
BstHHI	GCGC	2 cut(s)	190, 545
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	4 cut(s)	310, 332, 335, 422
BstNI	CCWGG	1 cut(s)	341
BstSCI	CCNGG	2 cut(s)	339, 368
BstSFI	CTRYAG	1 cut(s)	728
BstSLI	GKGCMC	1 cut(s)	533
BstV1I	GCAGC	2 cut(s)	69, 439
BstXI	CCANNNNNNTGG	2 cut(s)	526, 630
BstZI	CGGCCG	1 cut(s)	122
BsuRI	GGCC	6 cut(s)	124, 335, 404, 512, 518, 594
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	2 cut(s)	190, 545
Cfr10I	RCCGGY	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	343
CseI	GACGC	1 cut(s)	310
DdeI	CTNAG	2 cut(s)	364, 498
EaeI	YGGCCR	2 cut(s)	122, 402
EagI	CGGCCG	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
EclXI	CGGCCG	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	513, 589
Eco147I	AGGCCT	1 cut(s)	594
Eco24I	GRGCYC	2 cut(s)	315, 570
Eco47I	GGWCC	1 cut(s)	343
Eco47III	AGCGCT	1 cut(s)	544
Eco52I	CGGCCG	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	339
EcoT14I	CCWWGG	2 cut(s)	513, 589
EcoT38I	GRGCYC	2 cut(s)	315, 570
ErhI	CCWWGG	2 cut(s)	513, 589
FaiI	YATR	4 cut(s)	91, 658, 709, 711
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FaqI	GGGAC	5 cut(s)	186, 280, 329, 385, 647
FauI	CCCGC	2 cut(s)	331, 430
Fnu4HI	GCNGC	7 cut(s)	58, 122, 327, 336, 426, 453, 606
FriOI	GRGCYC	2 cut(s)	315, 570
Fsp4HI	GCNGC	7 cut(s)	58, 122, 327, 336, 426, 453, 606
FspBI	CTAG	2 cut(s)	54, 584
GlaI	GCGC	2 cut(s)	189, 544
GluI	GCNGC	7 cut(s)	58, 122, 327, 336, 426, 453, 606
HaeII	RGCGCY	2 cut(s)	191, 546
HaeIII	GGCC	6 cut(s)	124, 335, 404, 512, 518, 594
HapII	CCGG	6 cut(s)	61, 77, 273, 369, 401, 473
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	2 cut(s)	190, 545
Hin1I	GRCGYC	1 cut(s)	302
Hin6I	GCGC	2 cut(s)	188, 543
HinP1I	GCGC	2 cut(s)	188, 543
HinfI	GANTC	2 cut(s)	418, 460
HpaII	CCGG	6 cut(s)	61, 77, 273, 369, 401, 473
HphI	GGTGA	3 cut(s)	227, 469, 730
Hpy166II	GTNNAC	2 cut(s)	69, 82
Hpy188I	TCNGA	4 cut(s)	310, 465, 499, 753
Hpy8I	GTNNAC	2 cut(s)	69, 82
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	39, 248, 405
HpyCH4III	ACNGT	3 cut(s)	200, 289, 679
HpyCH4V	TGCA	1 cut(s)	730
HpyF10VI	GCNNNNNNNGC	4 cut(s)	310, 332, 335, 422
HpyF3I	CTNAG	2 cut(s)	364, 498
Hsp92I	GRCGYC	1 cut(s)	302
HspAI	GCGC	2 cut(s)	188, 543
LmnI	GCTCC	3 cut(s)	79, 310, 713
Lsp1109I	GCAGC	2 cut(s)	69, 439
LweI	GCATC	1 cut(s)	617
MaeI	CTAG	2 cut(s)	54, 584
MbiI	CCGCTC	1 cut(s)	716
MboII	GAAGA	5 cut(s)	152, 198, 448, 515, 638
MhlI	GDGCHC	3 cut(s)	315, 533, 570
MluCI	AATT	2 cut(s)	105, 192
MseI	TTAA	1 cut(s)	744
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	6 cut(s)	61, 77, 273, 369, 401, 473
MspR9I	CCNGG	2 cut(s)	341, 370
MvaI	CCWGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	4 cut(s)	310, 332, 335, 422
NciI	CCSGG	1 cut(s)	370
NheI	GCTAGC	1 cut(s)	53
NlaIV	GGNNCC	2 cut(s)	312, 345
NmeAIII	GCCGAG	2 cut(s)	355, 549
PceI	AGGCCT	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	418, 460
PkrI	GCNGC	7 cut(s)	59, 123, 328, 337, 427, 454, 607
PpuMI	RGGWCCY	1 cut(s)	343
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	312, 345
PspPI	GGNCC	1 cut(s)	343
PspPPI	RGGWCCY	1 cut(s)	343
PstI	CTGCAG	1 cut(s)	732
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	7 cut(s)	58, 122, 327, 336, 426, 453, 606
Sau96I	GGNCC	1 cut(s)	343
ScrFI	CCNGG	2 cut(s)	341, 370
SduI	GDGCHC	3 cut(s)	315, 533, 570
SetI	ASST	6 cut(s)	55, 240, 345, 365, 470, 751
SfaNI	GCATC	1 cut(s)	617
SfcI	CTRYAG	1 cut(s)	728
SgrAI	CRCCGGYG	1 cut(s)	472
SinI	GGWCC	1 cut(s)	343
Sse9I	AATT	2 cut(s)	105, 192
SseBI	AGGCCT	1 cut(s)	594
SspMI	CTAG	2 cut(s)	54, 584
StuI	AGGCCT	1 cut(s)	594
StyD4I	CCNGG	2 cut(s)	339, 368
StyI	CCWWGG	2 cut(s)	513, 589
TaaI	ACNGT	3 cut(s)	200, 289, 679
TaqI	TCGA	1 cut(s)	48
TasI	AATT	2 cut(s)	105, 192
TauI	GCSGC	5 cut(s)	124, 329, 338, 428, 608
TfiI	GAWTC	2 cut(s)	418, 460
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	2 cut(s)	57, 452
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	343
XapI	RAATTY	1 cut(s)	105
XspI	CTAG	2 cut(s)	54, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.