Rroxscaffold_4G00283180

Protein LOW PSII ACCUMULATION 2

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
5167537 .. 5169180
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00283180.1

Sequence Viewer

Length: 513 bp
ATGGCGCTATCCTATCATCTTCTTCCTCGGCTCCAATTCACCAAAACGGTGCGTTTCACTGTGAAGTCTCAGACCCCAACAGAGCCGTCGTCCGAGGGCAAAGAGGTCTCGCCGAAGAAACCCAGTTCCCAAGGGCTGGGATTCGGGTCGTCGGCGACTTCTGCGAGCAATTCGAGTGTGAGTTCAAAGCAAAAGAAGGGGAGGGCTTCGATTATACGGCGGTCGCCGGTGGAAAAGCCGGTGCTTTTTAGCGAAGAAGATGAGGCTAAGGCGAAGGAGATGGGGAGTAATGAGAGTGCTTTTGTGGTAGCTTGGTTGGTGCTTGGAGGTGTGATTCTAGTTGAAGGTCTTGCTCTTGCTACTTCGGGCTTCCTTCCAGAAGAGTGGGATAAATTATTTGTGAAGTATTTATATCCATCTTTTACGCCAACAGTCCTCTTGTTCATTGCTGGAACAACTGCATACGGAGTAATAAAGTACCTGCAGAATGAGGAACTCAAAGGTCAGAAATGA
Functional Annotation

Protein Analysis

170

Amino Acids

18.49

Weight (kDa)

9.37

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 489
AccB7I CCANNNNNTGG 1 cut(s) 136
AciI CCGC 1 cut(s) 220
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 2 cut(s) 186, 344
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 72, 112
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 31
BccI CCATC 2 cut(s) 274, 424
BceAI ACGGC 2 cut(s) 70, 233
BcoDI GTCTC 2 cut(s) 72, 112
BfaI CTAG 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 482
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 489
BmiI GGNNCC 1 cut(s) 32
BmrI ACTGGG 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 3 cut(s) 26, 93, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse118I RCCGGY 2 cut(s) 226, 238
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 444
BseDI CCNNGG 3 cut(s) 26, 93, 130
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 123
BseYI CCCAGC 1 cut(s) 136
Bsh1285I CGRYCG 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 224
BsiSI CCGG 2 cut(s) 227, 239
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 2 cut(s) 72, 112
Bso31I GGTCTC 1 cut(s) 112
BspACI CCGC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 486
BspMI ACCTGC 1 cut(s) 489
BspTNI GGTCTC 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 2 cut(s) 226, 238
BsrI ACTGG 1 cut(s) 123
BssAI RCCGGY 2 cut(s) 226, 238
BssECI CCNNGG 3 cut(s) 26, 93, 130
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 3 cut(s) 49, 61, 433
Bst6I CTCTTC 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 69, 267
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 2 cut(s) 72, 112
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 482
BstXI CCANNNNNNTGG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 489
Cac8I GCNNGC 1 cut(s) 166
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 226, 238
Csp6I GTAC 1 cut(s) 478
CviJI RGCY 8 cut(s) 31, 85, 136, 206, 238, 266, 311, 369
CviKI_1 RGCY 8 cut(s) 31, 85, 136, 206, 238, 266, 311, 369
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 2 cut(s) 69, 267
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaiI YATR 3 cut(s) 215, 412, 463
FspBI CTAG 1 cut(s) 338
GlaI GCGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 2 cut(s) 227, 239
HhaI GCGC 1 cut(s) 7
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 141, 334
HpaII CCGG 2 cut(s) 227, 239
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 3 cut(s) 72, 94, 507
Hpy188III TCNNGA 1 cut(s) 377
Hpy99I CGWCG 2 cut(s) 91, 154
HpyAV CCTTC 4 cut(s) 190, 268, 338, 383
HpyCH4III ACNGT 3 cut(s) 49, 61, 433
HpyCH4V TGCA 2 cut(s) 461, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 69, 267
HspAI GCGC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 36
LpnPI CCDG 7 cut(s) 122, 136, 240, 252, 390, 435, 494
MaeI CTAG 1 cut(s) 338
MboII GAAGA 6 cut(s) 11, 14, 127, 266, 269, 392
MluCI AATT 3 cut(s) 35, 169, 392
MnlI CCTC 8 cut(s) 36, 88, 97, 195, 256, 320, 446, 484
MspI CCGG 2 cut(s) 227, 239
MwoI GCNNNNNNNGC 1 cut(s) 161
NlaIV GGNNCC 1 cut(s) 32
NmeAIII GCCGAG 1 cut(s) 7
PfeI GAWTC 2 cut(s) 141, 334
PflMI CCANNNNNTGG 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 486
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SetI ASST 6 cut(s) 108, 313, 331, 349, 483, 505
SfcI CTRYAG 1 cut(s) 482
SgrAI CRCCGGYG 1 cut(s) 226
Sse9I AATT 3 cut(s) 35, 169, 392
SsiI CCGC 1 cut(s) 220
SspMI CTAG 1 cut(s) 338
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 3 cut(s) 49, 61, 433
TaqI TCGA 2 cut(s) 173, 209
TasI AATT 3 cut(s) 35, 169, 392
TfiI GAWTC 2 cut(s) 141, 334
TscAI CASTG 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 433
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 136
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.