AT5G51570

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015410
Physical Location & Seq
Forward (+)
20949291 .. 20951512
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51570.1

Sequence Viewer

Length: 879 bp
ATGGGTAATACGTATTGTATCTTAGGAGGTTGTATTGAACAAGCTAGCGTTGGTGTGGTCGAACGTTGGGGTCGATTCGAGCATATAGCTGAACCGGGATGTCATTTCTTCAACCCTCTCGCCGGTCAATGGCTCGCCGGAGTTCTCTCCACTAGGATCAAATCTCTTGATGTCAAAATTGAAACCAAAACTAAGGATAATGTGTTTGTGCAGCTGGTTTGTTCGATTCAGTATCGTGTAGTGAAAGCTAGTGCTGATGATGCGTTTTATGAGCTTCAAAACCCTAAAGAGCAGATCCAAGCTTATGTCTTTGATGTGGTTAGGGCTTTGGTCCCAATGATGACGCTTGATGCTCTTTTTGAACAAAAGGGTGAAGTTGCCAAGTCTGTTCTTGAGGAGCTTGAGAAGGTGATGGGTGCTTATGGATACAGCATTGAGCACATTCTAATGGTTGACATTATTCCTGATCCCTCTGTACGCAAGGCAATGAACGAAATCAATGCAGCACAAAGGCTCCAGCTCGCGAGTGTTTACAAAGGAGAAGCAGAGAAGATTCTCCAAGTGAAGAGAGCCGAAGCAGAAGCGGAAGCCAAGTACTTAGGTGGTGTCGGTGTGGCTAGACAAAGACAAGCAATCACAGACGGATTGAGGGAGAACATATTGAACTTTTCTGACAAAGTAGAAGGCACATCCGCCAAAGAAGTGATGGACTTGATCATGATCACACAGTACTTTGACACTATTAGAGACCTTGGAAACTCGTCAAAGAACACAACGGTGTTTCTCCCACACGGTCCGGGACATGTGAGGGACATCAGCGACCAGATACGCAACGGTATGATGGAGGCGGCCGCTAGTACTCAGGTCAACGACGTCTAG

Protein Analysis

292

Amino Acids

32.38

Weight (kDa)

5.28

Isoelectric Point (pI)

28.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 12 - 184 1.3e-27 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51570
fragaria_vesca FvH4_7g28140
malus_domestica MD01G1185100.v1.1 MD07G1257400.v1.1
prunus_persica Prupe.2G281600_v2.0.a1
pyrus_communis pycom01g19680 pycom07g23040
rosa_chinensis RchiOBHm_Chr1g0375061
rosa_laevigata RLG00000026691
rosa_multiflora Rmu_sc0000554.1_g000014
rosa_roxburghii Rroxscaffold_4G00283050
rosa_rugosa Rorug01G0387900
rosa_samantha Rh1AG398500 Rh1BG362600 Rh1CG376200
rosa_wichuraiana Rw1G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 876
AccII CGCG 1 cut(s) 524
AciI CCGC 4 cut(s) 584, 693, 848, 852
AclI AACGTT 1 cut(s) 64
AclWI GGATC 3 cut(s) 164, 289, 461
AcoI YGGCCR 1 cut(s) 849
AcyI GRCGYC 1 cut(s) 873
AfaI GTAC 4 cut(s) 477, 596, 731, 859
AfiI CCNNNNNNNGG 2 cut(s) 122, 129
AflIII ACRYGT 1 cut(s) 802
AgsI TTSAA 6 cut(s) 38, 112, 182, 278, 362, 664
AleI CACNNNNGTG 1 cut(s) 776
AluBI AGCT 8 cut(s) 44, 89, 214, 248, 274, 302, 400, 520
AluI AGCT 8 cut(s) 44, 89, 214, 248, 274, 302, 400, 520
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 1 cut(s) 741
AlwI GGATC 3 cut(s) 164, 289, 461
AoxI GGCC 1 cut(s) 849
ApeKI GCWGC 2 cut(s) 211, 503
AspS9I GGNCC 2 cut(s) 331, 794
AsuC2I CCSGG 2 cut(s) 96, 798
AsuHPI GGTGA 2 cut(s) 383, 421
AsuNHI GCTAGC 1 cut(s) 44
AvaII GGWCC 2 cut(s) 331, 794
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 223, 515
BccI CCATC 3 cut(s) 406, 700, 835
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BciVI GTATCC 1 cut(s) 419
BclI TGATCA 2 cut(s) 714, 720
BcnI CCSGG 2 cut(s) 96, 798
BcoDI GTCTC 1 cut(s) 741
BfaI CTAG 6 cut(s) 45, 153, 249, 618, 855, 877
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 4 cut(s) 212, 504, 849, 852
BlsI GCNGC 4 cut(s) 213, 505, 850, 853
BmcAI AGTACT 3 cut(s) 596, 731, 859
Bme1390I CCNGG 2 cut(s) 96, 798
Bme18I GGWCC 2 cut(s) 331, 794
BmgT120I GGNCC 2 cut(s) 331, 794
BmiI GGNNCC 2 cut(s) 333, 515
BmrFI CCNGG 2 cut(s) 96, 798
BmsI GCATC 2 cut(s) 250, 340
BmtI GCTAGC 1 cut(s) 48
BpmI CTGGAG 1 cut(s) 500
BpuEI CTTGAG 2 cut(s) 413, 422
BpuMI CCSGG 2 cut(s) 96, 798
BsaAI YACGTR 1 cut(s) 12
BsaBI GATNNNNATC 1 cut(s) 719
BsaHI GRCGYC 1 cut(s) 873
BsaI GGTCTC 1 cut(s) 741
BsaJI CCNNGG 1 cut(s) 751
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 129
Bse118I RCCGGY 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 492
Bse8I GATNNNNATC 1 cut(s) 719
BseDI CCNNGG 1 cut(s) 751
BseGI GGATG 2 cut(s) 104, 689
BseJI GATNNNNATC 1 cut(s) 719
BseLI CCNNNNNNNGG 2 cut(s) 122, 129
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 875
BseRI GAGGAG 1 cut(s) 410
BseX3I CGGCCG 1 cut(s) 849
BseXI GCAGC 2 cut(s) 223, 515
BsgI GTGCAG 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 524
Bsh1285I CGRYCG 1 cut(s) 852
BshFI GGCC 1 cut(s) 851
BsiEI CGRYCG 1 cut(s) 852
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 4 cut(s) 95, 123, 138, 797
BslFI GGGAC 3 cut(s) 317, 813, 824
BslI CCNNNNNNNGG 2 cut(s) 122, 129
BsmAI GTCTC 1 cut(s) 741
BsmFI GGGAC 3 cut(s) 317, 813, 824
BsnI GGCC 1 cut(s) 851
Bso31I GGTCTC 1 cut(s) 741
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 5 cut(s) 156, 294, 466, 714, 720
Bsp68I TCGCGA 1 cut(s) 524
BspACI CCGC 4 cut(s) 584, 693, 848, 852
BspANI GGCC 1 cut(s) 851
BspCNI CTCAG 1 cut(s) 874
BspFNI CGCG 1 cut(s) 524
BspHI TCATGA 1 cut(s) 717
BspLI GGNNCC 2 cut(s) 333, 515
BspOI GCTAGC 1 cut(s) 48
BspPI GGATC 3 cut(s) 164, 289, 461
BspTNI GGTCTC 1 cut(s) 741
BsrDI GCAATG 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 751
BssMI GATC 5 cut(s) 156, 294, 466, 714, 720
BssNI GRCGYC 1 cut(s) 873
BssT1I CCWWGG 1 cut(s) 751
Bst4CI ACNGT 4 cut(s) 729, 778, 794, 836
Bst6I CTCTTC 1 cut(s) 560
BstACI GRCGYC 1 cut(s) 873
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 3 cut(s) 46, 135, 522
BstDEI CTNAG 4 cut(s) 22, 192, 598, 861
BstF5I GGATG 2 cut(s) 104, 689
BstFNI CGCG 1 cut(s) 524
BstKTI GATC 5 cut(s) 159, 297, 469, 717, 723
BstMAI GTCTC 1 cut(s) 741
BstMBI GATC 5 cut(s) 156, 294, 466, 714, 720
BstMCI CGRYCG 1 cut(s) 852
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 806
BstSCI CCNGG 2 cut(s) 94, 796
BstSNI TACGTA 1 cut(s) 12
BstUI CGCG 1 cut(s) 524
BstV1I GCAGC 2 cut(s) 223, 515
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BstZI CGGCCG 1 cut(s) 849
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 1 cut(s) 851
BtsCI GGATG 2 cut(s) 104, 689
BtuMI TCGCGA 1 cut(s) 524
Cac8I GCNNGC 3 cut(s) 46, 135, 522
CciI TCATGA 1 cut(s) 717
CciNI GCGGCCGC 1 cut(s) 849
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 331, 794
CpoI CGGWCCG 1 cut(s) 794
CseI GACGC 1 cut(s) 352
Csp6I GTAC 4 cut(s) 476, 595, 730, 858
CspI CGGWCCG 1 cut(s) 794
CviAII CATG 2 cut(s) 718, 803
CviQI GTAC 4 cut(s) 476, 595, 730, 858
DdeI CTNAG 4 cut(s) 22, 192, 598, 861
DpnI GATC 5 cut(s) 158, 296, 468, 716, 722
DpnII GATC 5 cut(s) 156, 294, 466, 714, 720
EaeI YGGCCR 1 cut(s) 849
EagI CGGCCG 1 cut(s) 849
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
EciI GGCGGA 1 cut(s) 682
EclXI CGGCCG 1 cut(s) 849
Eco105I TACGTA 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 751
Eco31I GGTCTC 1 cut(s) 741
Eco47I GGWCC 2 cut(s) 331, 794
Eco52I CGGCCG 1 cut(s) 849
EcoT14I CCWWGG 1 cut(s) 751
ErhI CCWWGG 1 cut(s) 751
FaeI CATG 2 cut(s) 721, 806
FaiI YATR 9 cut(s) 84, 86, 270, 306, 423, 659, 719, 804, 839
FaqI GGGAC 3 cut(s) 317, 813, 824
FatI CATG 2 cut(s) 717, 802
FbaI TGATCA 2 cut(s) 714, 720
Fnu4HI GCNGC 4 cut(s) 212, 504, 849, 852
FokI GGATG 2 cut(s) 111, 676
Fsp4HI GCNGC 4 cut(s) 212, 504, 849, 852
FspBI CTAG 6 cut(s) 45, 153, 249, 618, 855, 877
GluI GCNGC 4 cut(s) 212, 504, 849, 852
GsuI CTGGAG 1 cut(s) 500
HaeIII GGCC 1 cut(s) 851
HapII CCGG 4 cut(s) 95, 123, 138, 797
HgaI GACGC 1 cut(s) 352
Hin1I GRCGYC 1 cut(s) 873
Hin1II CATG 2 cut(s) 721, 806
HincII GTYRAC 2 cut(s) 454, 868
HindII GTYRAC 2 cut(s) 454, 868
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 3 cut(s) 75, 226, 553
HpaII CCGG 4 cut(s) 95, 123, 138, 797
HphI GGTGA 2 cut(s) 383, 421
Hpy166II GTNNAC 3 cut(s) 454, 532, 868
Hpy188I TCNGA 1 cut(s) 673
Hpy188III TCNNGA 5 cut(s) 167, 392, 464, 523, 718
Hpy8I GTNNAC 3 cut(s) 454, 532, 868
Hpy99I CGWCG 1 cut(s) 875
HpyAV CCTTC 2 cut(s) 400, 677
HpyCH4III ACNGT 4 cut(s) 729, 778, 794, 836
HpyCH4IV ACGT 3 cut(s) 11, 64, 873
HpyCH4V TGCA 2 cut(s) 211, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 4 cut(s) 22, 192, 598, 861
HpySE526I ACGT 3 cut(s) 11, 64, 873
Hsp92I GRCGYC 1 cut(s) 873
Hsp92II CATG 2 cut(s) 721, 806
Ksp22I TGATCA 2 cut(s) 714, 720
Kzo9I GATC 5 cut(s) 156, 294, 466, 714, 720
LmnI GCTCC 2 cut(s) 397, 519
LpnPI CCDG 9 cut(s) 108, 136, 151, 200, 477, 530, 810, 836, 848
Lsp1109I GCAGC 2 cut(s) 223, 515
LweI GCATC 2 cut(s) 250, 340
MaeI CTAG 6 cut(s) 45, 153, 249, 618, 855, 877
MaeII ACGT 3 cut(s) 11, 64, 873
MalI GATC 5 cut(s) 158, 296, 468, 716, 722
MboI GATC 5 cut(s) 156, 294, 466, 714, 720
MboII GAAGA 3 cut(s) 100, 562, 577
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 1 cut(s) 177
MnlI CCTC 7 cut(s) 20, 126, 388, 481, 642, 801, 838
MslI CAYNNNNRTG 2 cut(s) 446, 776
MspA1I CMGCKG 1 cut(s) 214
MspI CCGG 4 cut(s) 95, 123, 138, 797
MspR9I CCNGG 2 cut(s) 96, 798
MvnI CGCG 1 cut(s) 524
MwoI GCNNNNNNNGC 1 cut(s) 260
NciI CCSGG 2 cut(s) 96, 798
NdeII GATC 5 cut(s) 156, 294, 466, 714, 720
NheI GCTAGC 1 cut(s) 44
NlaIII CATG 2 cut(s) 721, 806
NlaIV GGNNCC 2 cut(s) 333, 515
NotI GCGGCCGC 1 cut(s) 849
NruI TCGCGA 1 cut(s) 524
NspI RCATGY 1 cut(s) 806
OliI CACNNNNGTG 1 cut(s) 776
PagI TCATGA 1 cut(s) 717
PciI ACATGT 1 cut(s) 802
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PfeI GAWTC 3 cut(s) 75, 226, 553
PfoI TCCNGGA 1 cut(s) 796
PkrI GCNGC 4 cut(s) 213, 505, 850, 853
Ppu21I YACGTR 1 cut(s) 12
PscI ACATGT 1 cut(s) 802
Psp1406I AACGTT 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 333, 515
PspPI GGNCC 2 cut(s) 331, 794
PsuI RGATCY 1 cut(s) 294
PvuII CAGCTG 1 cut(s) 214
RruI TCGCGA 1 cut(s) 524
RsaI GTAC 4 cut(s) 477, 596, 731, 859
RsaNI GTAC 4 cut(s) 476, 595, 730, 858
RseI CAYNNNNRTG 2 cut(s) 446, 776
Rsr2I CGGWCCG 1 cut(s) 794
RsrII CGGWCCG 1 cut(s) 794
SatI GCNGC 4 cut(s) 212, 504, 849, 852
Sau3AI GATC 5 cut(s) 156, 294, 466, 714, 720
Sau96I GGNCC 2 cut(s) 331, 794
ScaI AGTACT 3 cut(s) 596, 731, 859
ScrFI CCNGG 2 cut(s) 96, 798
SduI GDGCHC 1 cut(s) 441
SfaNI GCATC 2 cut(s) 250, 340
SinI GGWCC 2 cut(s) 331, 794
SmiMI CAYNNNNRTG 2 cut(s) 446, 776
SmlI CTYRAG 2 cut(s) 392, 401
SmoI CTYRAG 2 cut(s) 392, 401
SnaBI TACGTA 1 cut(s) 12
Sse9I AATT 1 cut(s) 177
SsiI CCGC 4 cut(s) 584, 693, 848, 852
SspMI CTAG 6 cut(s) 45, 153, 249, 618, 855, 877
StyD4I CCNGG 2 cut(s) 94, 796
StyI CCWWGG 1 cut(s) 751
TaaI ACNGT 4 cut(s) 729, 778, 794, 836
TaiI ACGT 3 cut(s) 14, 67, 876
TaqI TCGA 4 cut(s) 60, 73, 78, 224
TasI AATT 1 cut(s) 177
TatI WGTACW 3 cut(s) 594, 729, 857
TauI GCSGC 2 cut(s) 851, 854
TfiI GAWTC 3 cut(s) 75, 226, 553
TseI GCWGC 2 cut(s) 211, 503
TspDTI ATGAA 1 cut(s) 503
TspGWI ACGGA 1 cut(s) 657
VpaK11BI GGWCC 2 cut(s) 331, 794
XceI RCATGY 1 cut(s) 806
XcmI CCANNNNNNNNNTGG 1 cut(s) 703
XspI CTAG 6 cut(s) 45, 153, 249, 618, 855, 877
ZraI GACGTC 1 cut(s) 874
ZrmI AGTACT 3 cut(s) 596, 731, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.