Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0015410

Physical Location & Seq

Genomic Coordinates Forward (+)

28430691 .. 28432906

Gene Structure 2216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1185100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGCAATTCGTGCTGCTGCTGCTGCACCTGGATAGACCAAGCGAGGGTAGGCATCTTGGAGAGGTGGGGCCGGTTCGAGAGGCTCGCCGAACCCGGTTTCCACCTCCTGAACCCGTTGGCCGGTCAATGGGTCGCCGGCATCCTCTCCACCAGGATCGCCTCCCTCGACGTCCGCATCGAGACCAAAACCAAGGATAATGTGTTCGTGCAATTGGTGTGCTCGATACAATACAGGGTAGTGAGAGAGAACGCCGATGATGCGTTTTATGAGCTGCAAAACCCCAAAGAGCAGATTCAAGCTTATGTATTTGATGTGGTTAGAGCTCTGGTGCCGAGAATGACGTTGGACGAGCTCTTTGAGCAGAAGGGTGAGGTTGCGAAAGCAGTGTTGGAGGAACTTGAGAAGGTTATGAGAGAATATGGATACAGCATAGAGCACATACTGATGGTTGACATTATACCTGATGCCTCTGTCCGCAAGGCAATGAACGAAATCAATGCAGCTCAAAGGCTCCAGCTTGCCAACGTATACAAAGGAGAAGCAGAGAAGGTGCTTCAAGTGAAAAGAGCAGAAGCTGAAGCCGAGGCCAAGTACCTTGGTGGAGTTGGTGTTGCCAGGCAGAGGCAGGCAATCACCGATGGATTAAGAGAGAACATCTTGAATTTCTCAGGCAAGGTGGAAGGCACCTCGTCAAAGGAGGTGATGGATATGATTATGATCACTCAGTACTTTGACACGATGAAAGACCTTGGGAACTCATCGAAAAACACGACAGTTTTTCTACCGCATGGTCCGGGTCACATTCGGGACATCGGTGATCAAATACGCAACGGACTAATGGAGGCATCTAGTGCTCAGCTAAATGCCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

292

Amino Acids

32.71

Weight (kDa)

5.35

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	12 - 184	2.6e-28	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51570
fragaria_vesca	FvH4_7g28140
malus_domestica	MD01G1185100.v1.1 MD07G1257400.v1.1
prunus_persica	Prupe.2G281600_v2.0.a1
pyrus_communis	pycom01g19680 pycom07g23040
rosa_chinensis	RchiOBHm_Chr1g0375061
rosa_laevigata	RLG00000026691
rosa_multiflora	Rmu_sc0000554.1_g000014
rosa_roxburghii	Rroxscaffold_4G00283050
rosa_rugosa	Rorug01G0387900
rosa_samantha	Rh1AG398500 Rh1BG362600 Rh1CG376200
rosa_wichuraiana	Rw1G035380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	174
AccB1I	GGYRCC	2 cut(s)	331, 686
AccI	GTMKAC	1 cut(s)	531
AciI	CCGC	3 cut(s)	175, 478, 788
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	664
AcuI	CTGAAG	1 cut(s)	600
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	2 cut(s)	596, 731
AfiI	CCNNNNNNNGG	4 cut(s)	46, 122, 129, 624
AgsI	TTSAA	3 cut(s)	299, 560, 664
AjnI	CCWGG	3 cut(s)	29, 152, 617
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AloI	GAACNNNNNNTCC	4 cut(s)	84, 116, 188, 220
AluBI	AGCT	8 cut(s)	274, 302, 326, 355, 506, 520, 578, 862
AluI	AGCT	8 cut(s)	274, 302, 326, 355, 506, 520, 578, 862
Alw21I	GWGCWC	5 cut(s)	224, 328, 357, 441, 859
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	3 cut(s)	70, 120, 588
ApeKI	GCWGC	6 cut(s)	15, 18, 21, 24, 274, 503
ApoI	RAATTY	1 cut(s)	664
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AspS9I	GGNCC	2 cut(s)	70, 794
AsuC2I	CCSGG	2 cut(s)	96, 798
AsuHPI	GGTGA	4 cut(s)	383, 628, 715, 830
AvaII	GGWCC	1 cut(s)	794
BanI	GGYRCC	2 cut(s)	331, 686
BanII	GRGCYC	2 cut(s)	328, 357
Bbv12I	GWGCWC	5 cut(s)	224, 328, 357, 441, 859
BbvI	GCAGC	6 cut(s)	2, 5, 8, 11, 261, 515
BccI	CCATC	3 cut(s)	442, 635, 700
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BciT130I	CCWGG	3 cut(s)	31, 154, 619
BciVI	GTATCC	1 cut(s)	419
BclI	TGATCA	2 cut(s)	720, 820
BcnI	CCSGG	2 cut(s)	96, 798
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	852
BfuI	GTATCC	1 cut(s)	419
BisI	GCNGC	6 cut(s)	16, 19, 22, 25, 275, 504
BlpI	GCTNAGC	1 cut(s)	858
BlsI	GCNGC	6 cut(s)	17, 20, 23, 26, 276, 505
BmcAI	AGTACT	1 cut(s)	731
Bme1390I	CCNGG	5 cut(s)	31, 96, 154, 619, 798
Bme18I	GGWCC	1 cut(s)	794
BmgT120I	GGNCC	2 cut(s)	70, 794
BmiI	GGNNCC	4 cut(s)	71, 333, 515, 688
BmrFI	CCNGG	5 cut(s)	31, 96, 154, 619, 798
BmsI	GCATC	6 cut(s)	63, 150, 186, 250, 457, 857
BpmI	CTGGAG	1 cut(s)	500
Bpu1102I	GCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	96, 798
BsaBI	GATNNNNATC	1 cut(s)	719
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	4 cut(s)	192, 585, 598, 751
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 122, 129, 624
Bse118I	RCCGGY	3 cut(s)	72, 122, 137
Bse3DI	GCAATG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	719
BseBI	CCWGG	3 cut(s)	31, 154, 619
BseDI	CCNNGG	4 cut(s)	192, 585, 598, 751
BseGI	GGATG	1 cut(s)	141
BseJI	GATNNNNATC	1 cut(s)	719
BseLI	CCNNNNNNNGG	4 cut(s)	46, 122, 129, 624
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	3 cut(s)	684, 740, 872
BseXI	GCAGC	6 cut(s)	2, 5, 8, 11, 261, 515
BsgI	GTGCAG	1 cut(s)	10
BshFI	GGCC	3 cut(s)	72, 122, 590
BshNI	GGYRCC	2 cut(s)	331, 686
BsiHKAI	GWGCWC	5 cut(s)	224, 328, 357, 441, 859
BsiSI	CCGG	5 cut(s)	73, 96, 123, 138, 797
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	4 cut(s)	46, 122, 129, 624
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	824
BsnI	GGCC	3 cut(s)	72, 122, 590
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	5 cut(s)	224, 328, 357, 441, 859
Bsp143I	GATC	3 cut(s)	156, 720, 820
Bsp1720I	GCTNAGC	1 cut(s)	858
BspACI	CCGC	3 cut(s)	175, 478, 788
BspANI	GGCC	3 cut(s)	72, 122, 590
BspCNI	CTCAG	3 cut(s)	683, 739, 871
BspLI	GGNNCC	4 cut(s)	71, 333, 515, 688
BspPI	GGATC	1 cut(s)	164
BspT107I	GGYRCC	2 cut(s)	331, 686
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	3 cut(s)	72, 122, 137
BssAI	RCCGGY	3 cut(s)	72, 122, 137
BssECI	CCNNGG	4 cut(s)	192, 585, 598, 751
BssMI	GATC	3 cut(s)	156, 720, 820
BssNAI	GTATAC	1 cut(s)	532
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	3 cut(s)	192, 598, 751
Bst1107I	GTATAC	1 cut(s)	532
Bst2UI	CCWGG	3 cut(s)	31, 154, 619
Bst4CI	ACNGT	1 cut(s)	778
BstACI	GRCGYC	1 cut(s)	171
BstAPI	GCANNNNNTGC	2 cut(s)	12, 854
BstC8I	GCNNGC	4 cut(s)	87, 139, 522, 630
BstDEI	CTNAG	3 cut(s)	670, 726, 858
BstF5I	GGATG	1 cut(s)	141
BstKTI	GATC	3 cut(s)	159, 723, 823
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	156, 720, 820
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 21, 24, 260, 361, 854
BstNI	CCWGG	3 cut(s)	31, 154, 619
BstSCI	CCNGG	5 cut(s)	29, 94, 152, 617, 796
BstV1I	GCAGC	6 cut(s)	2, 5, 8, 11, 261, 515
BstZ17I	GTATAC	1 cut(s)	532
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	3 cut(s)	72, 122, 590
BtsCI	GGATG	1 cut(s)	141
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	4 cut(s)	87, 139, 522, 630
CaiI	CAGNNNCTG	1 cut(s)	578
Cfr10I	RCCGGY	3 cut(s)	72, 122, 137
Cfr13I	GGNCC	2 cut(s)	70, 794
Csp6I	GTAC	2 cut(s)	595, 730
CviAII	CATG	1 cut(s)	791
CviQI	GTAC	2 cut(s)	595, 730
DdeI	CTNAG	3 cut(s)	670, 726, 858
DpnI	GATC	3 cut(s)	158, 722, 822
DpnII	GATC	3 cut(s)	156, 720, 820
EaeI	YGGCCR	1 cut(s)	120
Ecl136II	GAGCTC	2 cut(s)	326, 355
Eco130I	CCWWGG	3 cut(s)	192, 598, 751
Eco24I	GRGCYC	2 cut(s)	328, 357
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	794
Eco53kI	GAGCTC	2 cut(s)	326, 355
Eco57I	CTGAAG	1 cut(s)	600
EcoICRI	GAGCTC	2 cut(s)	326, 355
EcoRII	CCWGG	3 cut(s)	29, 152, 617
EcoT14I	CCWWGG	3 cut(s)	192, 598, 751
EcoT38I	GRGCYC	2 cut(s)	328, 357
ErhI	CCWWGG	3 cut(s)	192, 598, 751
FaeI	CATG	1 cut(s)	794
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	1 cut(s)	790
FbaI	TGATCA	2 cut(s)	720, 820
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	6 cut(s)	16, 19, 22, 25, 275, 504
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	2 cut(s)	328, 357
Fsp4HI	GCNGC	6 cut(s)	16, 19, 22, 25, 275, 504
FspBI	CTAG	1 cut(s)	852
GluI	GCNGC	6 cut(s)	16, 19, 22, 25, 275, 504
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	3 cut(s)	72, 122, 590
HapII	CCGG	5 cut(s)	73, 96, 123, 138, 797
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	794
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	1 cut(s)	295
HpaII	CCGG	5 cut(s)	73, 96, 123, 138, 797
HphI	GGTGA	4 cut(s)	383, 628, 715, 830
Hpy166II	GTNNAC	2 cut(s)	454, 532
Hpy188III	TCNNGA	5 cut(s)	79, 109, 181, 661, 809
Hpy8I	GTNNAC	2 cut(s)	454, 532
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	4 cut(s)	361, 400, 544, 677
HpyCH4III	ACNGT	1 cut(s)	778
HpyCH4IV	ACGT	3 cut(s)	171, 344, 528
HpyCH4V	TGCA	4 cut(s)	27, 211, 277, 503
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 21, 24, 260, 361, 854
HpyF3I	CTNAG	3 cut(s)	670, 726, 858
HpySE526I	ACGT	3 cut(s)	171, 344, 528
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	794
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Ksp22I	TGATCA	2 cut(s)	720, 820
Kzo9I	GATC	3 cut(s)	156, 720, 820
LmnI	GCTCC	1 cut(s)	519
Lsp1109I	GCAGC	6 cut(s)	2, 5, 8, 11, 261, 515
LweI	GCATC	6 cut(s)	63, 150, 186, 250, 457, 857
MaeI	CTAG	1 cut(s)	852
MaeII	ACGT	3 cut(s)	171, 344, 528
MaeIII	GTNAC	1 cut(s)	800
MalI	GATC	3 cut(s)	158, 722, 822
MboI	GATC	3 cut(s)	156, 720, 820
MfeI	CAATTG	1 cut(s)	212
MhlI	GDGCHC	5 cut(s)	224, 328, 357, 441, 859
MluCI	AATT	3 cut(s)	7, 212, 664
MmeI	TCCRAC	2 cut(s)	327, 372
MroNI	GCCGGC	1 cut(s)	137
MseI	TTAA	1 cut(s)	647
MslI	CAYNNNNRTG	1 cut(s)	446
MspI	CCGG	5 cut(s)	73, 96, 123, 138, 797
MspR9I	CCNGG	5 cut(s)	31, 96, 154, 619, 798
MunI	CAATTG	1 cut(s)	212
MvaI	CCWGG	3 cut(s)	31, 154, 619
MwoI	GCNNNNNNNGC	6 cut(s)	12, 21, 24, 260, 361, 854
NaeI	GCCGGC	1 cut(s)	139
NciI	CCSGG	2 cut(s)	96, 798
NdeII	GATC	3 cut(s)	156, 720, 820
NgoMIV	GCCGGC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	794
NlaIV	GGNNCC	4 cut(s)	71, 333, 515, 688
NmeAIII	GCCGAG	2 cut(s)	360, 610
NmuCI	GTSAC	1 cut(s)	800
PcsI	WCGNNNNNNNCGW	3 cut(s)	165, 177, 770
PdiI	GCCGGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	6 cut(s)	17, 20, 23, 26, 276, 505
Psp124BI	GAGCTC	2 cut(s)	328, 357
Psp6I	CCWGG	3 cut(s)	29, 152, 617
PspGI	CCWGG	3 cut(s)	29, 152, 617
PspN4I	GGNNCC	4 cut(s)	71, 333, 515, 688
PspPI	GGNCC	2 cut(s)	70, 794
PstNI	CAGNNNCTG	1 cut(s)	578
RsaI	GTAC	2 cut(s)	596, 731
RsaNI	GTAC	2 cut(s)	595, 730
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	2 cut(s)	328, 357
SaqAI	TTAA	1 cut(s)	647
SatI	GCNGC	6 cut(s)	16, 19, 22, 25, 275, 504
Sau3AI	GATC	3 cut(s)	156, 720, 820
Sau96I	GGNCC	2 cut(s)	70, 794
ScaI	AGTACT	1 cut(s)	731
ScrFI	CCNGG	5 cut(s)	31, 96, 154, 619, 798
SduI	GDGCHC	5 cut(s)	224, 328, 357, 441, 859
SfaNI	GCATC	6 cut(s)	63, 150, 186, 250, 457, 857
SinI	GGWCC	1 cut(s)	794
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	3 cut(s)	7, 212, 664
SsiI	CCGC	3 cut(s)	175, 478, 788
SspMI	CTAG	1 cut(s)	852
SstI	GAGCTC	2 cut(s)	328, 357
StyD4I	CCNGG	5 cut(s)	29, 94, 152, 617, 796
StyI	CCWWGG	3 cut(s)	192, 598, 751
TaaI	ACNGT	1 cut(s)	778
TaiI	ACGT	3 cut(s)	174, 347, 531
TaqI	TCGA	5 cut(s)	78, 168, 180, 224, 764
TasI	AATT	3 cut(s)	7, 212, 664
TatI	WGTACW	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	647
Tru9I	TTAA	1 cut(s)	647
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	800
TseI	GCWGC	6 cut(s)	15, 18, 21, 24, 274, 503
Tsp45I	GTSAC	1 cut(s)	800
TspDTI	ATGAA	2 cut(s)	503, 758
TspGWI	ACGGA	1 cut(s)	849
TspRI	CASTG	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	794
XapI	RAATTY	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	531
XspI	CTAG	1 cut(s)	852
ZraI	GACGTC	1 cut(s)	172
ZrmI	AGTACT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.