FvH4_7g28140

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015410
Physical Location & Seq
Forward (+)
20894934 .. 20897186
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28140.t1

Sequence Viewer

Length: 870 bp
ATGGGAAATTCTTGCTGCTTCTTATGCATGTGCGTTGACCAAGCCGGCATCGGCGTCATCGAGAAGTGGGGCCGCTTCCAGCGCCTCGCCGAGCCCGGCTTCCACTTCCTCAACCCCTGCGCCGGTCAATGGATCGCCGGAATCCTCTCCACCAGAATCCAATCCCTCGACGTCAAAATCGAGACCAAGACCAAGGATAATGTGTTTGTGCACTTGGTGTGCTGCATTCAGTACCGTGTGGTGAAGGCGAATGCCGATGATGCGTTTTACGAGCTGCAAAACCCGAAAGAGCAGATTCAGGCCTATGTGTTTGATGTGGTTAGGGCTCTGGTGCCGAGAATGACATTGGATGAAGTGTTTGAACAGAAGGGTGAGGTTGCTAAATCTGTGTTGGAGGAACTCGAGAAGGTTATGAGAGAATATGGATACAGCATCGAGCACATGCTCATGGTAGACATCATACCAGATGCTTCTGTGCGCAAGGCAATGAATGAAATCAATGCAGCTCAAAGGCTCCAGCTTGCTAATGTATACAAAGGGGAGGCCGAGAAGGTGCTTCAGGTCAAAAGGGCAGAAGCTGATGCTGAGGCCAAGTACCTTGGAGGAGTTGGTGTTGCCAGGCAGAGGCAGGCAATCACAGATGGCTTGAGGGAGAACATCTTGAACTTCTCACACAAGGTGGAAGGCACATCATCAAAGGAAGTGATGGATCTCATCATGGTCACACAGTACTTCGATACAATCAAAGACCTGGGGAACAATTCAAAGAACACCACAGTCTTCCTGCCTCATGGTCCTGGCCACATCAGAGACATCAGTGATCAGATACGGAATGGGCTTTTGGAGGCCTCTGCCGCCAAAGTTGATTAA

Protein Analysis

290

Amino Acids

32.39

Weight (kDa)

5.77

Isoelectric Point (pI)

23.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 13 - 184 1.6e-27 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51570
fragaria_vesca FvH4_7g28140
malus_domestica MD01G1185100.v1.1 MD07G1257400.v1.1
prunus_persica Prupe.2G281600_v2.0.a1
pyrus_communis pycom01g19680 pycom07g23040
rosa_chinensis RchiOBHm_Chr1g0375061
rosa_laevigata RLG00000026691
rosa_multiflora Rmu_sc0000554.1_g000014
rosa_roxburghii Rroxscaffold_4G00283050
rosa_rugosa Rorug01G0387900
rosa_samantha Rh1AG398500 Rh1BG362600 Rh1CG376200
rosa_wichuraiana Rw1G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
Acc16I TGCGCA 1 cut(s) 479
AccB1I GGYRCC 1 cut(s) 331
AccI GTMKAC 2 cut(s) 453, 531
AciI CCGC 2 cut(s) 73, 855
AclWI GGATC 2 cut(s) 140, 717
AcoI YGGCCR 1 cut(s) 799
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 542
AcyI GRCGYC 2 cut(s) 54, 171
AdeI CACNNNGTG 2 cut(s) 217, 679
AfaI GTAC 3 cut(s) 233, 596, 731
AfiI CCNNNNNNNGG 3 cut(s) 122, 129, 624
AgsI TTSAA 3 cut(s) 362, 664, 765
AjnI CCWGG 3 cut(s) 617, 750, 796
AjuI GAANNNNNNNTTGG 2 cut(s) 824, 856
AluBI AGCT 4 cut(s) 274, 506, 520, 578
AluI AGCT 4 cut(s) 274, 506, 520, 578
Alw21I GWGCWC 2 cut(s) 213, 441
Alw26I GTCTC 2 cut(s) 176, 804
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 2 cut(s) 140, 717
AlwNI CAGNNNCTG 1 cut(s) 578
Ama87I CYCGRG 1 cut(s) 401
AoxI GGCC 6 cut(s) 70, 300, 543, 588, 799, 846
ApaLI GTGCAC 1 cut(s) 209
ApeKI GCWGC 4 cut(s) 15, 222, 274, 503
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 3 cut(s) 84, 122, 480
AspS9I GGNCC 2 cut(s) 70, 794
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 2 cut(s) 253, 383
AvaI CYCGRG 1 cut(s) 401
AvaII GGWCC 1 cut(s) 794
BaeGI GKGCMC 1 cut(s) 213
BalI TGGCCA 1 cut(s) 801
BanI GGYRCC 1 cut(s) 331
BanII GRGCYC 2 cut(s) 96, 328
BbsI GAAGAC 1 cut(s) 772
Bbv12I GWGCWC 2 cut(s) 213, 441
BbvCI CCTCAGC 1 cut(s) 585
BbvI GCAGC 4 cut(s) 2, 209, 261, 515
BccI CCATC 2 cut(s) 635, 700
BciT130I CCWGG 3 cut(s) 619, 752, 798
BciVI GTATCC 1 cut(s) 419
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 176, 804
BfoI RGCGCY 1 cut(s) 85
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 6 cut(s) 16, 73, 223, 275, 504, 855
BlsI GCNGC 6 cut(s) 17, 74, 224, 276, 505, 856
BmcAI AGTACT 1 cut(s) 731
Bme1390I CCNGG 4 cut(s) 96, 619, 752, 798
Bme18I GGWCC 1 cut(s) 794
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 2 cut(s) 70, 794
BmiI GGNNCC 3 cut(s) 71, 333, 515
BmrFI CCNGG 4 cut(s) 96, 619, 752, 798
BmsI GCATC 5 cut(s) 57, 250, 441, 457, 571
BpiI GAAGAC 1 cut(s) 772
BpmI CTGGAG 1 cut(s) 500
Bpu10I CCTNAGC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 667
BpuMI CCSGG 1 cut(s) 96
BsaHI GRCGYC 2 cut(s) 54, 171
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 192, 598, 751
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 129, 624
Bse118I RCCGGY 2 cut(s) 44, 122
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 3 cut(s) 619, 752, 798
BseDI CCNNGG 3 cut(s) 192, 598, 751
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 3 cut(s) 122, 129, 624
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 576
BseRI GAGGAG 1 cut(s) 618
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 4 cut(s) 2, 209, 261, 515
BshFI GGCC 6 cut(s) 72, 302, 545, 590, 801, 848
BshNI GGYRCC 1 cut(s) 331
BsiHKAI GWGCWC 2 cut(s) 213, 441
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 4 cut(s) 45, 96, 123, 138
BslI CCNNNNNNNGG 3 cut(s) 122, 129, 624
BsmAI GTCTC 2 cut(s) 176, 804
BsmI GAATGC 2 cut(s) 225, 256
BsnI GGCC 6 cut(s) 72, 302, 545, 590, 801, 848
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 4 cut(s) 96, 213, 328, 441
Bsp143I GATC 3 cut(s) 132, 709, 820
BspACI CCGC 2 cut(s) 73, 855
BspANI GGCC 6 cut(s) 72, 302, 545, 590, 801, 848
BspCNI CTCAG 1 cut(s) 577
BspLI GGNNCC 3 cut(s) 71, 333, 515
BspPI GGATC 2 cut(s) 140, 717
BspT107I GGYRCC 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 492
BsrFI RCCGGY 2 cut(s) 44, 122
BssAI RCCGGY 2 cut(s) 44, 122
BssECI CCNNGG 3 cut(s) 192, 598, 751
BssMI GATC 3 cut(s) 132, 709, 820
BssNAI GTATAC 1 cut(s) 532
BssNI GRCGYC 2 cut(s) 54, 171
BssT1I CCWWGG 2 cut(s) 192, 598
Bst1107I GTATAC 1 cut(s) 532
Bst2UI CCWGG 3 cut(s) 619, 752, 798
Bst4CI ACNGT 3 cut(s) 236, 729, 778
BstACI GRCGYC 2 cut(s) 54, 171
BstC8I GCNNGC 3 cut(s) 46, 522, 630
BstDEI CTNAG 1 cut(s) 585
BstF5I GGATG 1 cut(s) 355
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 3 cut(s) 84, 122, 480
BstKTI GATC 3 cut(s) 135, 712, 823
BstMAI GTCTC 2 cut(s) 176, 804
BstMBI GATC 3 cut(s) 132, 709, 820
BstMWI GCNNNNNNNGC 4 cut(s) 24, 81, 260, 854
BstNI CCWGG 3 cut(s) 619, 752, 798
BstNSI RCATGY 2 cut(s) 31, 445
BstSCI CCNGG 4 cut(s) 94, 617, 750, 796
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 4 cut(s) 2, 209, 261, 515
BstV2I GAAGAC 1 cut(s) 772
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BstZ17I GTATAC 1 cut(s) 532
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 6 cut(s) 72, 302, 545, 590, 801, 848
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 823
Cac8I GCNNGC 3 cut(s) 46, 522, 630
CaiI CAGNNNCTG 1 cut(s) 578
CfoI GCGC 3 cut(s) 84, 122, 480
Cfr10I RCCGGY 2 cut(s) 44, 122
Cfr13I GGNCC 2 cut(s) 70, 794
CseI GACGC 1 cut(s) 43
Csp6I GTAC 3 cut(s) 232, 595, 730
CviAII CATG 5 cut(s) 28, 442, 448, 718, 791
CviQI GTAC 3 cut(s) 232, 595, 730
DdeI CTNAG 1 cut(s) 585
DpnI GATC 3 cut(s) 134, 711, 822
DpnII GATC 3 cut(s) 132, 709, 820
DraIII CACNNNGTG 2 cut(s) 217, 679
EaeI YGGCCR 1 cut(s) 799
Eco130I CCWWGG 2 cut(s) 192, 598
Eco147I AGGCCT 2 cut(s) 302, 848
Eco24I GRGCYC 2 cut(s) 96, 328
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 794
Eco57I CTGAAG 1 cut(s) 542
Eco88I CYCGRG 1 cut(s) 401
EcoRII CCWGG 3 cut(s) 617, 750, 796
EcoT14I CCWWGG 2 cut(s) 192, 598
EcoT22I ATGCAT 1 cut(s) 29
EcoT38I GRGCYC 2 cut(s) 96, 328
ErhI CCWWGG 2 cut(s) 192, 598
FaeI CATG 5 cut(s) 31, 445, 451, 721, 794
FatI CATG 5 cut(s) 27, 441, 447, 717, 790
FbaI TGATCA 1 cut(s) 820
FblI GTMKAC 2 cut(s) 453, 531
Fnu4HI GCNGC 6 cut(s) 16, 73, 223, 275, 504, 855
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 2 cut(s) 96, 328
Fsp4HI GCNGC 6 cut(s) 16, 73, 223, 275, 504, 855
FspI TGCGCA 1 cut(s) 479
GlaI GCGC 3 cut(s) 83, 121, 479
GluI GCNGC 6 cut(s) 16, 73, 223, 275, 504, 855
GsuI CTGGAG 1 cut(s) 500
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 6 cut(s) 72, 302, 545, 590, 801, 848
HapII CCGG 4 cut(s) 45, 96, 123, 138
HgaI GACGC 1 cut(s) 43
HhaI GCGC 3 cut(s) 84, 122, 480
Hin1I GRCGYC 2 cut(s) 54, 171
Hin1II CATG 5 cut(s) 31, 445, 451, 721, 794
Hin6I GCGC 3 cut(s) 82, 120, 478
HinP1I GCGC 3 cut(s) 82, 120, 478
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 3 cut(s) 141, 156, 295
HpaII CCGG 4 cut(s) 45, 96, 123, 138
HphI GGTGA 2 cut(s) 253, 383
Hpy166II GTNNAC 4 cut(s) 37, 211, 454, 532
Hpy188I TCNGA 2 cut(s) 809, 825
Hpy188III TCNNGA 4 cut(s) 61, 181, 403, 661
Hpy8I GTNNAC 4 cut(s) 37, 211, 454, 532
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 5 cut(s) 238, 361, 400, 544, 677
HpyCH4III ACNGT 3 cut(s) 236, 729, 778
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 5 cut(s) 27, 211, 225, 277, 503
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 81, 260, 854
HpyF3I CTNAG 1 cut(s) 585
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 2 cut(s) 54, 171
Hsp92II CATG 5 cut(s) 31, 445, 451, 721, 794
HspAI GCGC 3 cut(s) 82, 120, 478
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 3 cut(s) 132, 709, 820
LmnI GCTCC 1 cut(s) 519
Lsp1109I GCAGC 4 cut(s) 2, 209, 261, 515
LweI GCATC 5 cut(s) 57, 250, 441, 457, 571
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 721
MalI GATC 3 cut(s) 134, 711, 822
MboI GATC 3 cut(s) 132, 709, 820
MboII GAAGA 1 cut(s) 772
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 4 cut(s) 96, 213, 328, 441
MlsI TGGCCA 1 cut(s) 801
MluCI AATT 2 cut(s) 7, 760
MluNI TGGCCA 1 cut(s) 801
MmeI TCCRAC 1 cut(s) 372
Mox20I TGGCCA 1 cut(s) 801
Mph1103I ATGCAT 1 cut(s) 29
MroNI GCCGGC 1 cut(s) 44
MscI TGGCCA 1 cut(s) 801
MseI TTAA 1 cut(s) 868
MslI CAYNNNNRTG 1 cut(s) 446
Msp20I TGGCCA 1 cut(s) 801
MspI CCGG 4 cut(s) 45, 96, 123, 138
MspR9I CCNGG 4 cut(s) 96, 619, 752, 798
Mva1269I GAATGC 2 cut(s) 225, 256
MvaI CCWGG 3 cut(s) 619, 752, 798
MwoI GCNNNNNNNGC 4 cut(s) 24, 81, 260, 854
NaeI GCCGGC 1 cut(s) 46
NciI CCSGG 1 cut(s) 96
NdeII GATC 3 cut(s) 132, 709, 820
NgoMIV GCCGGC 1 cut(s) 44
NlaIII CATG 5 cut(s) 31, 445, 451, 721, 794
NlaIV GGNNCC 3 cut(s) 71, 333, 515
NmeAIII GCCGAG 3 cut(s) 115, 360, 571
NmuCI GTSAC 1 cut(s) 721
NsbI TGCGCA 1 cut(s) 479
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 2 cut(s) 31, 445
PaeR7I CTCGAG 1 cut(s) 401
PceI AGGCCT 2 cut(s) 302, 848
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 177
PctI GAATGC 2 cut(s) 225, 256
PdiI GCCGGC 1 cut(s) 46
PfeI GAWTC 3 cut(s) 141, 156, 295
PkrI GCNGC 6 cut(s) 17, 74, 224, 276, 505, 856
Psp6I CCWGG 3 cut(s) 617, 750, 796
PspGI CCWGG 3 cut(s) 617, 750, 796
PspN4I GGNNCC 3 cut(s) 71, 333, 515
PspPI GGNCC 2 cut(s) 70, 794
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 1 cut(s) 709
RsaI GTAC 3 cut(s) 233, 596, 731
RsaNI GTAC 3 cut(s) 232, 595, 730
RseI CAYNNNNRTG 1 cut(s) 446
SaqAI TTAA 1 cut(s) 868
SatI GCNGC 6 cut(s) 16, 73, 223, 275, 504, 855
Sau3AI GATC 3 cut(s) 132, 709, 820
Sau96I GGNCC 2 cut(s) 70, 794
ScaI AGTACT 1 cut(s) 731
ScrFI CCNGG 4 cut(s) 96, 619, 752, 798
SduI GDGCHC 4 cut(s) 96, 213, 328, 441
SfaNI GCATC 5 cut(s) 57, 250, 441, 457, 571
Sfr274I CTCGAG 1 cut(s) 401
SinI GGWCC 1 cut(s) 794
SlaI CTCGAG 1 cut(s) 401
SmiMI CAYNNNNRTG 1 cut(s) 446
SmlI CTYRAG 2 cut(s) 401, 646
SmoI CTYRAG 2 cut(s) 401, 646
Sse9I AATT 2 cut(s) 7, 760
SseBI AGGCCT 2 cut(s) 302, 848
SsiI CCGC 2 cut(s) 73, 855
StuI AGGCCT 2 cut(s) 302, 848
StyD4I CCNGG 4 cut(s) 94, 617, 750, 796
StyI CCWWGG 2 cut(s) 192, 598
TaaI ACNGT 3 cut(s) 236, 729, 778
TaiI ACGT 1 cut(s) 174
TaqI TCGA 6 cut(s) 60, 168, 180, 402, 435, 735
TasI AATT 2 cut(s) 7, 760
TatI WGTACW 1 cut(s) 729
TauI GCSGC 2 cut(s) 75, 857
TfiI GAWTC 3 cut(s) 141, 156, 295
Tru1I TTAA 1 cut(s) 868
Tru9I TTAA 1 cut(s) 868
TscAI CASTG 1 cut(s) 823
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 4 cut(s) 15, 222, 274, 503
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 3 cut(s) 366, 503, 507
TspGWI ACGGA 1 cut(s) 844
TspRI CASTG 1 cut(s) 823
VneI GTGCAC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 794
XapI RAATTY 1 cut(s) 7
XceI RCATGY 2 cut(s) 31, 445
XhoI CTCGAG 1 cut(s) 401
XmiI GTMKAC 2 cut(s) 453, 531
ZraI GACGTC 1 cut(s) 172
ZrmI AGTACT 1 cut(s) 731
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.