Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0015410

Physical Location & Seq

Genomic Coordinates Forward (+)

28028810 .. 28031533

Gene Structure 2724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G281600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGCAATTCTTGCTTTGGCCTTTTTACCTGCATAGACCAAGCAAGCGTAGGCGTCTTGGAGAGGTGGGGTCGGTTCGAGAAGCTGGCCGAACCCGGTTTCCATCTCCTGAACCCGTGCGCTGGTCAATGGGTCGCCGGTGTCCTCTCCACCAGGATTTCCTCTCTCGATGTCCGCATCGAGACCAAAACCAAGGATAATGTGTTTGTGCAATTAGTGTGTTCCATTCAATACCGGGTGGTGAGAGAGAATGCTGATGATGCTTTTTATGAGTTGCAAAACCCCAAAGAGCAGATTCAAGCTTATGTCTTTGATGTGGTTAGAGCTCTGGTGCCGAGAATGACATTGGATGACCTCTTTGAACAGAAGGGTGAGGTTGCTAAAGCTGTCTTGGAGGAACTTGAGAAGGTTATGAGAGAATATGGATACAGCATAGAGCACATACTGATGGTTGACATCATACCGGATGCCTCTGTGCGCAAGGCAATGAATGAGATTAATGCAGCTCAAAGGCTCCAGCTTGCTAATGTATACAAAGGAGAGGCAGAGAAGGTGCTTCAGGTGAAAAGGGCAGAAGCTGAAGCTGAGGCCAAGTACCTTGGAGGAGTTGGTGTTGCCAGGCAGAGGCAGGCAATCACTGATGGGTTAAGAGAGAACATCTTGAATTTCTCAGGCAAAGTGGAAGGAACCTCAGCAAAGGAGGTGATGGATCTGATCATGATCACTCAGTACTTTGACACAATTAAAGACCTTGGCAACAACTCAAAGAACACTACTGTTTTTATACCCCATGGTCCTGGTCACGTCAGAGACATCGGTGATCAGATACGCAATGGACAACTGGAGGCAGCTAGTGCTCAAGTAAATGGCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

292

Amino Acids

32.43

Weight (kDa)

5.25

Isoelectric Point (pI)

21.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51570
fragaria_vesca	FvH4_7g28140
malus_domestica	MD01G1185100.v1.1 MD07G1257400.v1.1
prunus_persica	Prupe.2G281600_v2.0.a1
pyrus_communis	pycom01g19680 pycom07g23040
rosa_chinensis	RchiOBHm_Chr1g0375061
rosa_laevigata	RLG00000026691
rosa_multiflora	Rmu_sc0000554.1_g000014
rosa_roxburghii	Rroxscaffold_4G00283050
rosa_rugosa	Rorug01G0387900
rosa_samantha	Rh1AG398500 Rh1BG362600 Rh1CG376200
rosa_wichuraiana	Rw1G035380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	531
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	1 cut(s)	717
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	664
AcuI	CTGAAG	2 cut(s)	542, 600
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	2 cut(s)	596, 731
AfiI	CCNNNNNNNGG	2 cut(s)	122, 624
AgsI	TTSAA	4 cut(s)	230, 299, 362, 664
AjiI	CACGTC	1 cut(s)	805
AjnI	CCWGG	3 cut(s)	152, 617, 796
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	9 cut(s)	85, 302, 326, 386, 506, 520, 578, 584, 851
AluI	AGCT	9 cut(s)	85, 302, 326, 386, 506, 520, 578, 584, 851
Alw21I	GWGCWC	3 cut(s)	328, 441, 859
Alw26I	GTCTC	2 cut(s)	176, 804
AlwI	GGATC	1 cut(s)	717
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	3 cut(s)	19, 87, 588
ApeKI	GCWGC	2 cut(s)	503, 848
ApoI	RAATTY	1 cut(s)	664
AseI	ATTAAT	1 cut(s)	498
AspLEI	GCGC	2 cut(s)	122, 480
AspS9I	GGNCC	1 cut(s)	794
AsuC2I	CCSGG	2 cut(s)	96, 236
AsuHPI	GGTGA	5 cut(s)	253, 383, 574, 715, 830
AvaII	GGWCC	1 cut(s)	794
BanI	GGYRCC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	328
Bbv12I	GWGCWC	3 cut(s)	328, 441, 859
BbvCI	CCTCAGC	2 cut(s)	585, 691
BbvI	GCAGC	2 cut(s)	515, 860
BccI	CCATC	4 cut(s)	111, 442, 635, 700
BciT130I	CCWGG	3 cut(s)	154, 619, 798
BciVI	GTATCC	1 cut(s)	419
BclI	TGATCA	3 cut(s)	714, 720, 820
BcnI	CCSGG	2 cut(s)	96, 236
BcoDI	GTCTC	2 cut(s)	176, 804
BfaI	CTAG	1 cut(s)	852
BfuAI	ACCTGC	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	419
BisI	GCNGC	2 cut(s)	504, 849
BlsI	GCNGC	2 cut(s)	505, 850
BmcAI	AGTACT	1 cut(s)	731
Bme1390I	CCNGG	5 cut(s)	96, 154, 236, 619, 798
Bme18I	GGWCC	1 cut(s)	794
BmgBI	CACGTC	1 cut(s)	805
BmgT120I	GGNCC	1 cut(s)	794
BmiI	GGNNCC	3 cut(s)	333, 515, 688
BmrFI	CCNGG	5 cut(s)	96, 154, 236, 619, 798
BmsI	GCATC	3 cut(s)	186, 250, 457
BpmI	CTGGAG	2 cut(s)	500, 863
Bpu10I	CCTNAGC	2 cut(s)	585, 691
BpuEI	CTTGAG	2 cut(s)	422, 843
BpuMI	CCSGG	2 cut(s)	96, 236
BsaBI	GATNNNNATC	1 cut(s)	719
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	4 cut(s)	192, 598, 751, 790
BsaWI	WCCGGW	1 cut(s)	463
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 624
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	846
Bse3DI	GCAATG	2 cut(s)	492, 838
Bse8I	GATNNNNATC	1 cut(s)	719
BseBI	CCWGG	3 cut(s)	154, 619, 798
BseDI	CCNNGG	4 cut(s)	192, 598, 751, 790
BseGI	GGATG	2 cut(s)	355, 472
BseJI	GATNNNNATC	1 cut(s)	719
BseLI	CCNNNNNNNGG	2 cut(s)	122, 624
BseMI	GCAATG	2 cut(s)	492, 838
BseMII	CTCAG	4 cut(s)	576, 684, 705, 740
BseNI	ACTGG	1 cut(s)	846
BseRI	GAGGAG	1 cut(s)	618
BseXI	GCAGC	2 cut(s)	515, 860
BshFI	GGCC	3 cut(s)	21, 89, 590
BshNI	GGYRCC	1 cut(s)	331
BsiHKAI	GWGCWC	3 cut(s)	328, 441, 859
BsiSI	CCGG	4 cut(s)	96, 138, 235, 464
BslI	CCNNNNNNNGG	2 cut(s)	122, 624
BsmAI	GTCTC	2 cut(s)	176, 804
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	21, 89, 590
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	3 cut(s)	328, 441, 859
Bsp143I	GATC	4 cut(s)	709, 714, 720, 820
Bsp19I	CCATGG	1 cut(s)	790
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	3 cut(s)	21, 89, 590
BspCNI	CTCAG	4 cut(s)	577, 683, 704, 739
BspHI	TCATGA	1 cut(s)	717
BspLI	GGNNCC	3 cut(s)	333, 515, 688
BspMI	ACCTGC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	717
BspT107I	GGYRCC	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	2 cut(s)	492, 838
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	846
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	4 cut(s)	192, 598, 751, 790
BssMI	GATC	4 cut(s)	709, 714, 720, 820
BssNAI	GTATAC	1 cut(s)	532
BssNI	GRCGYC	1 cut(s)	54
BssT1I	CCWWGG	4 cut(s)	192, 598, 751, 790
Bst1107I	GTATAC	1 cut(s)	532
Bst2UI	CCWGG	3 cut(s)	154, 619, 798
Bst4CI	ACNGT	1 cut(s)	778
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	2 cut(s)	12, 854
BstC8I	GCNNGC	4 cut(s)	46, 87, 522, 630
BstDEI	CTNAG	4 cut(s)	585, 670, 691, 726
BstDSI	CCRYGG	1 cut(s)	790
BstF5I	GGATG	2 cut(s)	355, 472
BstHHI	GCGC	2 cut(s)	122, 480
BstKTI	GATC	4 cut(s)	712, 717, 723, 823
BstMAI	GTCTC	2 cut(s)	176, 804
BstMBI	GATC	4 cut(s)	709, 714, 720, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 260, 854
BstNI	CCWGG	3 cut(s)	154, 619, 798
BstSCI	CCNGG	5 cut(s)	94, 152, 234, 617, 796
BstV1I	GCAGC	2 cut(s)	515, 860
BstX2I	RGATCY	1 cut(s)	709
BstXI	CCANNNNNNTGG	1 cut(s)	797
BstYI	RGATCY	1 cut(s)	709
BstZ17I	GTATAC	1 cut(s)	532
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	3 cut(s)	21, 89, 590
BtgI	CCRYGG	1 cut(s)	790
BtrI	CACGTC	1 cut(s)	805
BtsCI	GGATG	2 cut(s)	355, 472
BtsIMutI	CAGTG	1 cut(s)	636
BveI	ACCTGC	1 cut(s)	38
Cac8I	GCNNGC	4 cut(s)	46, 87, 522, 630
CaiI	CAGNNNCTG	1 cut(s)	578
CciI	TCATGA	1 cut(s)	717
CfoI	GCGC	2 cut(s)	122, 480
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	794
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	595, 730
CviAII	CATG	2 cut(s)	718, 791
CviQI	GTAC	2 cut(s)	595, 730
DdeI	CTNAG	4 cut(s)	585, 670, 691, 726
DpnI	GATC	4 cut(s)	711, 716, 722, 822
DpnII	GATC	4 cut(s)	709, 714, 720, 820
EaeI	YGGCCR	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	326
Eco130I	CCWWGG	4 cut(s)	192, 598, 751, 790
Eco24I	GRGCYC	1 cut(s)	328
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	794
Eco53kI	GAGCTC	1 cut(s)	326
Eco57I	CTGAAG	2 cut(s)	542, 600
EcoICRI	GAGCTC	1 cut(s)	326
EcoRII	CCWGG	3 cut(s)	152, 617, 796
EcoT14I	CCWWGG	4 cut(s)	192, 598, 751, 790
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	4 cut(s)	192, 598, 751, 790
FaeI	CATG	2 cut(s)	721, 794
FatI	CATG	2 cut(s)	717, 790
FbaI	TGATCA	3 cut(s)	714, 720, 820
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	2 cut(s)	504, 849
FokI	GGATG	2 cut(s)	362, 479
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	2 cut(s)	504, 849
FspBI	CTAG	1 cut(s)	852
FspI	TGCGCA	1 cut(s)	479
GlaI	GCGC	2 cut(s)	121, 479
GluI	GCNGC	2 cut(s)	504, 849
GsuI	CTGGAG	2 cut(s)	500, 863
HaeIII	GGCC	3 cut(s)	21, 89, 590
HapII	CCGG	4 cut(s)	96, 138, 235, 464
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	2 cut(s)	122, 480
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	721, 794
Hin6I	GCGC	2 cut(s)	120, 478
HinP1I	GCGC	2 cut(s)	120, 478
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	1 cut(s)	295
HpaII	CCGG	4 cut(s)	96, 138, 235, 464
HphI	GGTGA	5 cut(s)	253, 383, 574, 715, 830
Hpy166II	GTNNAC	2 cut(s)	454, 532
Hpy188I	TCNGA	3 cut(s)	714, 809, 825
Hpy188III	TCNNGA	6 cut(s)	79, 109, 167, 181, 661, 718
Hpy8I	GTNNAC	2 cut(s)	454, 532
HpyAV	CCTTC	4 cut(s)	361, 400, 544, 677
HpyCH4III	ACNGT	1 cut(s)	778
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	4 cut(s)	33, 211, 277, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 260, 854
HpyF3I	CTNAG	4 cut(s)	585, 670, 691, 726
HpySE526I	ACGT	1 cut(s)	804
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	2 cut(s)	721, 794
HspAI	GCGC	2 cut(s)	120, 478
Ksp22I	TGATCA	3 cut(s)	714, 720, 820
Kzo9I	GATC	4 cut(s)	709, 714, 720, 820
LmnI	GCTCC	1 cut(s)	519
Lsp1109I	GCAGC	2 cut(s)	515, 860
LweI	GCATC	3 cut(s)	186, 250, 457
MaeI	CTAG	1 cut(s)	852
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	1 cut(s)	800
MalI	GATC	4 cut(s)	711, 716, 722, 822
MboI	GATC	4 cut(s)	709, 714, 720, 820
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	3 cut(s)	328, 441, 859
MluCI	AATT	4 cut(s)	7, 212, 664, 741
MseI	TTAA	3 cut(s)	498, 647, 744
MslI	CAYNNNNRTG	1 cut(s)	446
MspI	CCGG	4 cut(s)	96, 138, 235, 464
MspR9I	CCNGG	5 cut(s)	96, 154, 236, 619, 798
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	3 cut(s)	154, 619, 798
MwoI	GCNNNNNNNGC	3 cut(s)	12, 260, 854
NciI	CCSGG	2 cut(s)	96, 236
NcoI	CCATGG	1 cut(s)	790
NdeII	GATC	4 cut(s)	709, 714, 720, 820
NlaIII	CATG	2 cut(s)	721, 794
NlaIV	GGNNCC	3 cut(s)	333, 515, 688
NmeAIII	GCCGAG	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	800
NsbI	TGCGCA	1 cut(s)	479
PagI	TCATGA	1 cut(s)	717
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	505, 850
PshBI	ATTAAT	1 cut(s)	498
Psp124BI	GAGCTC	1 cut(s)	328
Psp6I	CCWGG	3 cut(s)	152, 617, 796
PspGI	CCWGG	3 cut(s)	152, 617, 796
PspN4I	GGNNCC	3 cut(s)	333, 515, 688
PspPI	GGNCC	1 cut(s)	794
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	2 cut(s)	596, 731
RsaNI	GTAC	2 cut(s)	595, 730
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	1 cut(s)	328
SaqAI	TTAA	3 cut(s)	498, 647, 744
SatI	GCNGC	2 cut(s)	504, 849
Sau3AI	GATC	4 cut(s)	709, 714, 720, 820
Sau96I	GGNCC	1 cut(s)	794
ScaI	AGTACT	1 cut(s)	731
ScrFI	CCNGG	5 cut(s)	96, 154, 236, 619, 798
SduI	GDGCHC	3 cut(s)	328, 441, 859
SfaNI	GCATC	3 cut(s)	186, 250, 457
SgrAI	CRCCGGYG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	794
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	401, 858
SmoI	CTYRAG	2 cut(s)	401, 858
Sse9I	AATT	4 cut(s)	7, 212, 664, 741
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	852
SstI	GAGCTC	1 cut(s)	328
StyD4I	CCNGG	5 cut(s)	94, 152, 234, 617, 796
StyI	CCWWGG	4 cut(s)	192, 598, 751, 790
TaaI	ACNGT	1 cut(s)	778
TaiI	ACGT	1 cut(s)	807
TaqI	TCGA	3 cut(s)	78, 168, 180
TasI	AATT	4 cut(s)	7, 212, 664, 741
TatI	WGTACW	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	3 cut(s)	498, 647, 744
Tru9I	TTAA	3 cut(s)	498, 647, 744
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	1 cut(s)	800
TseI	GCWGC	2 cut(s)	503, 848
Tsp45I	GTSAC	1 cut(s)	800
TspDTI	ATGAA	1 cut(s)	503
TspRI	CASTG	1 cut(s)	643
VpaK11BI	GGWCC	1 cut(s)	794
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	531
XspI	CTAG	1 cut(s)	852
ZrmI	AGTACT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.