Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0015410

Physical Location & Seq

Genomic Coordinates Forward (+)

24122269 .. 24124172

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23040.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGATTGAAGTACTATTCTCTACGGATAAATTCTCTCTTATCCAAAAAGCCCAATCGTACAGAAGTCGGTCTCTCTTCCCTAACCGTATAAATAGTCCTCGGCGGTCGTCGTCCGTCCCCGTTCGCATTTCCACAGTTCCCAAATTTCGCACCAAAACCTACACAGTCCAGTCCAATCCATTCCAGATGGGCAATTCGTGCTGCTGCCTCTGTACCTGCATAGACCAAGCGAGCATAGGCATCTTGGAGAGGTGGGGCCGTTTCGAGAGGCTCGCCGAACCCGGTTTCCACCTCCTGAACCCGTTGGCCGGCCAATGGGTTGCCGGCATCCTCTCCACCAGGGTCGCCTCCCTCGACGTCCGCATCGAGACCAAAACCAAGGATAATGTGTTTGTGCAATTGGTCTGCTCAATTCAATACAGGGTGGTGAAAGAGAATGCTGATGATGCGTTTTATGAGCTGCAAAACCCCAAAGAGCAGATTCAAGCTTATGTCTTTGATGTGGTTAGAGCTCTGGTTCCGAGAATGACGCTGGACGAGCTCTTTGAGCAGAAGGGTGAGGTTGCTAAAGCCGTGTTGGAGGAGCTTGAGAAGGTTATGAGAGAATATGGATACAGCATAGAGCACATACTGATGGTTGACATTATACCTGATGCCTCTGTCCGCAAGGCAATGAATGAGATCAATGCAGCTCAAAGGCTCCAGCTAGCCAATGTATACAAAGGAGAAGCAGAGAAGGTGCTTCAGGTGAAAAGGGCAGAAGCTGAAGCCGAGGCCAAGTACCTTGGCGGAGTTGGTGTTGCCAGGCAGAGGCAGGCAATCACCGATGGATTAACAGAGAACATCTTGAATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

286

Amino Acids

32.27

Weight (kDa)

8.46

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51570
fragaria_vesca	FvH4_7g28140
malus_domestica	MD01G1185100.v1.1 MD07G1257400.v1.1
prunus_persica	Prupe.2G281600_v2.0.a1
pyrus_communis	pycom01g19680 pycom07g23040
rosa_chinensis	RchiOBHm_Chr1g0375061
rosa_laevigata	RLG00000026691
rosa_multiflora	Rmu_sc0000554.1_g000014
rosa_roxburghii	Rroxscaffold_4G00283050
rosa_rugosa	Rorug01G0387900
rosa_samantha	Rh1AG398500 Rh1BG362600 Rh1CG376200
rosa_wichuraiana	Rw1G035380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	360
Acc36I	ACCTGC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	717
AciI	CCGC	4 cut(s)	103, 361, 664, 789
AcoI	YGGCCR	2 cut(s)	306, 310
AcsI	RAATTY	3 cut(s)	29, 143, 850
AcuI	CTGAAG	2 cut(s)	728, 786
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	4 cut(s)	12, 59, 214, 782
AfiI	CCNNNNNNNGG	3 cut(s)	308, 315, 810
AgsI	TTSAA	4 cut(s)	8, 416, 485, 850
AjnI	CCWGG	2 cut(s)	338, 803
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
AluBI	AGCT	8 cut(s)	460, 488, 512, 541, 586, 692, 706, 764
AluI	AGCT	8 cut(s)	460, 488, 512, 541, 586, 692, 706, 764
Alw21I	GWGCWC	3 cut(s)	514, 543, 627
Alw26I	GTCTC	2 cut(s)	75, 362
AlwNI	CAGNNNCTG	1 cut(s)	764
AoxI	GGCC	4 cut(s)	256, 306, 310, 774
ApeKI	GCWGC	4 cut(s)	201, 204, 460, 689
ApoI	RAATTY	3 cut(s)	29, 143, 850
ArsI	GACNNNNNNTTYG	2 cut(s)	527, 559
AspS9I	GGNCC	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	4 cut(s)	439, 569, 760, 814
AsuNHI	GCTAGC	1 cut(s)	706
BanII	GRGCYC	2 cut(s)	514, 543
Bbv12I	GWGCWC	3 cut(s)	514, 543, 627
BbvI	GCAGC	4 cut(s)	188, 191, 447, 701
BccI	CCATC	3 cut(s)	181, 628, 821
BceAI	ACGGC	2 cut(s)	243, 557
BciT130I	CCWGG	2 cut(s)	340, 805
BciVI	GTATCC	1 cut(s)	605
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	75, 362
BfaI	CTAG	1 cut(s)	707
BfuAI	ACCTGC	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	605
BisI	GCNGC	4 cut(s)	202, 205, 461, 690
BlsI	GCNGC	4 cut(s)	203, 206, 462, 691
BmcAI	AGTACT	1 cut(s)	12
Bme1390I	CCNGG	3 cut(s)	282, 340, 805
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	3 cut(s)	257, 519, 701
BmrFI	CCNGG	3 cut(s)	282, 340, 805
BmsI	GCATC	5 cut(s)	249, 336, 372, 436, 643
BmtI	GCTAGC	1 cut(s)	710
BpmI	CTGGAG	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	608
BpuMI	CCSGG	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	357
BsaI	GGTCTC	2 cut(s)	75, 362
BsaJI	CCNNGG	5 cut(s)	98, 339, 378, 771, 784
BsaXI	ACNNNNNCTCC	2 cut(s)	783, 813
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 315, 810
Bse118I	RCCGGY	2 cut(s)	308, 323
Bse1I	ACTGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	678
BseBI	CCWGG	2 cut(s)	340, 805
BseDI	CCNNGG	5 cut(s)	98, 339, 378, 771, 784
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	3 cut(s)	308, 315, 810
BseMI	GCAATG	1 cut(s)	678
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	596
BseXI	GCAGC	4 cut(s)	188, 191, 447, 701
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	4 cut(s)	258, 308, 312, 776
BsiEI	CGRYCG	1 cut(s)	107
BsiHKAI	GWGCWC	3 cut(s)	514, 543, 627
BsiSI	CCGG	3 cut(s)	282, 309, 324
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	3 cut(s)	308, 315, 810
BsmAI	GTCTC	2 cut(s)	75, 362
BsmFI	GGGAC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	4 cut(s)	258, 308, 312, 776
Bso31I	GGTCTC	2 cut(s)	75, 362
Bsp1286I	GDGCHC	3 cut(s)	514, 543, 627
Bsp143I	GATC	1 cut(s)	681
BspACI	CCGC	4 cut(s)	103, 361, 664, 789
BspANI	GGCC	4 cut(s)	258, 308, 312, 776
BspLI	GGNNCC	3 cut(s)	257, 519, 701
BspMI	ACCTGC	1 cut(s)	224
BspOI	GCTAGC	1 cut(s)	710
BspTNI	GGTCTC	2 cut(s)	75, 362
BsrDI	GCAATG	1 cut(s)	678
BsrFI	RCCGGY	2 cut(s)	308, 323
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	2 cut(s)	308, 323
BssECI	CCNNGG	5 cut(s)	98, 339, 378, 771, 784
BssMI	GATC	1 cut(s)	681
BssNAI	GTATAC	1 cut(s)	718
BssNI	GRCGYC	1 cut(s)	357
BssT1I	CCWWGG	2 cut(s)	378, 784
Bst1107I	GTATAC	1 cut(s)	718
Bst2UI	CCWGG	2 cut(s)	340, 805
Bst4CI	ACNGT	3 cut(s)	86, 136, 166
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstC8I	GCNNGC	6 cut(s)	232, 273, 310, 325, 708, 816
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	1 cut(s)	684
BstMAI	GTCTC	2 cut(s)	75, 362
BstMBI	GATC	1 cut(s)	681
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 446, 538, 547
BstNI	CCWGG	2 cut(s)	340, 805
BstSCI	CCNGG	3 cut(s)	280, 338, 803
BstV1I	GCAGC	4 cut(s)	188, 191, 447, 701
BstZ17I	GTATAC	1 cut(s)	718
BsuI	GTATCC	1 cut(s)	605
BsuRI	GGCC	4 cut(s)	258, 308, 312, 776
BtsCI	GGATG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	6 cut(s)	232, 273, 310, 325, 708, 816
CaiI	CAGNNNCTG	1 cut(s)	764
Cfr10I	RCCGGY	2 cut(s)	308, 323
Cfr13I	GGNCC	1 cut(s)	256
CseI	GACGC	1 cut(s)	538
Csp6I	GTAC	4 cut(s)	11, 58, 213, 781
CviQI	GTAC	4 cut(s)	11, 58, 213, 781
DpnI	GATC	1 cut(s)	683
DpnII	GATC	1 cut(s)	681
EaeI	YGGCCR	2 cut(s)	306, 310
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EciI	GGCGGA	1 cut(s)	804
Ecl136II	GAGCTC	2 cut(s)	512, 541
Eco130I	CCWWGG	2 cut(s)	378, 784
Eco24I	GRGCYC	2 cut(s)	514, 543
Eco31I	GGTCTC	2 cut(s)	75, 362
Eco53kI	GAGCTC	2 cut(s)	512, 541
Eco57I	CTGAAG	2 cut(s)	728, 786
EcoICRI	GAGCTC	2 cut(s)	512, 541
EcoRII	CCWGG	2 cut(s)	338, 803
EcoT14I	CCWWGG	2 cut(s)	378, 784
EcoT38I	GRGCYC	2 cut(s)	514, 543
ErhI	CCWWGG	2 cut(s)	378, 784
FaqI	GGGAC	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	4 cut(s)	202, 205, 461, 690
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	2 cut(s)	514, 543
FseI	GGCCGGCC	1 cut(s)	312
Fsp4HI	GCNGC	4 cut(s)	202, 205, 461, 690
FspBI	CTAG	1 cut(s)	707
GluI	GCNGC	4 cut(s)	202, 205, 461, 690
GsuI	CTGGAG	1 cut(s)	686
HaeIII	GGCC	4 cut(s)	258, 308, 312, 776
HapII	CCGG	3 cut(s)	282, 309, 324
HgaI	GACGC	1 cut(s)	538
Hin1I	GRCGYC	1 cut(s)	357
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	1 cut(s)	481
HpaII	CCGG	3 cut(s)	282, 309, 324
HphI	GGTGA	4 cut(s)	439, 569, 760, 814
Hpy166II	GTNNAC	2 cut(s)	640, 718
Hpy188I	TCNGA	2 cut(s)	522, 857
Hpy188III	TCNNGA	5 cut(s)	184, 265, 295, 367, 847
Hpy8I	GTNNAC	2 cut(s)	640, 718
Hpy99I	CGWCG	2 cut(s)	112, 359
HpyAV	CCTTC	3 cut(s)	547, 586, 730
HpyCH4III	ACNGT	3 cut(s)	86, 136, 166
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	4 cut(s)	219, 397, 463, 689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 446, 538, 547
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	357
KroI	GCCGGC	2 cut(s)	308, 323
KroNI	GCCGGC	2 cut(s)	310, 325
Kzo9I	GATC	1 cut(s)	681
LmnI	GCTCC	2 cut(s)	583, 705
Lsp1109I	GCAGC	4 cut(s)	188, 191, 447, 701
LweI	GCATC	5 cut(s)	249, 336, 372, 436, 643
MaeI	CTAG	1 cut(s)	707
MaeII	ACGT	1 cut(s)	357
MalI	GATC	1 cut(s)	683
MboI	GATC	1 cut(s)	681
MboII	GAAGA	1 cut(s)	67
MfeI	CAATTG	1 cut(s)	398
MhlI	GDGCHC	3 cut(s)	514, 543, 627
MluCI	AATT	6 cut(s)	29, 143, 193, 398, 411, 850
MmeI	TCCRAC	1 cut(s)	558
MroNI	GCCGGC	2 cut(s)	308, 323
MseI	TTAA	1 cut(s)	833
MslI	CAYNNNNRTG	1 cut(s)	632
MspI	CCGG	3 cut(s)	282, 309, 324
MspR9I	CCNGG	3 cut(s)	282, 340, 805
MunI	CAATTG	1 cut(s)	398
Mva1269I	GAATGC	1 cut(s)	442
MvaI	CCWGG	2 cut(s)	340, 805
MwoI	GCNNNNNNNGC	4 cut(s)	198, 446, 538, 547
NaeI	GCCGGC	2 cut(s)	310, 325
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	1 cut(s)	681
NgoMIV	GCCGGC	2 cut(s)	308, 323
NheI	GCTAGC	1 cut(s)	706
NlaIV	GGNNCC	3 cut(s)	257, 519, 701
NmeAIII	GCCGAG	2 cut(s)	79, 796
PcsI	WCGNNNNNNNCGW	2 cut(s)	351, 363
PctI	GAATGC	1 cut(s)	442
PdiI	GCCGGC	2 cut(s)	310, 325
PfeI	GAWTC	1 cut(s)	481
PkrI	GCNGC	4 cut(s)	203, 206, 462, 691
Psp124BI	GAGCTC	2 cut(s)	514, 543
Psp6I	CCWGG	2 cut(s)	338, 803
PspGI	CCWGG	2 cut(s)	338, 803
PspN4I	GGNNCC	3 cut(s)	257, 519, 701
PspPI	GGNCC	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	764
RigI	GGCCGGCC	1 cut(s)	312
RsaI	GTAC	4 cut(s)	12, 59, 214, 782
RsaNI	GTAC	4 cut(s)	11, 58, 213, 781
RseI	CAYNNNNRTG	1 cut(s)	632
SacI	GAGCTC	2 cut(s)	514, 543
SaqAI	TTAA	1 cut(s)	833
SatI	GCNGC	4 cut(s)	202, 205, 461, 690
Sau3AI	GATC	1 cut(s)	681
Sau96I	GGNCC	1 cut(s)	256
ScaI	AGTACT	1 cut(s)	12
ScrFI	CCNGG	3 cut(s)	282, 340, 805
SduI	GDGCHC	3 cut(s)	514, 543, 627
SfaNI	GCATC	5 cut(s)	249, 336, 372, 436, 643
SmiMI	CAYNNNNRTG	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	6 cut(s)	29, 143, 193, 398, 411, 850
SsiI	CCGC	4 cut(s)	103, 361, 664, 789
SspMI	CTAG	1 cut(s)	707
SstI	GAGCTC	2 cut(s)	514, 543
StyD4I	CCNGG	3 cut(s)	280, 338, 803
StyI	CCWWGG	2 cut(s)	378, 784
TaaI	ACNGT	3 cut(s)	86, 136, 166
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	3 cut(s)	264, 354, 366
TaqII	GACCGA	1 cut(s)	57
TasI	AATT	6 cut(s)	29, 143, 193, 398, 411, 850
TatI	WGTACW	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	1 cut(s)	833
Tru9I	TTAA	1 cut(s)	833
TseI	GCWGC	4 cut(s)	201, 204, 460, 689
TspDTI	ATGAA	1 cut(s)	689
TspGWI	ACGGA	2 cut(s)	38, 103
XapI	RAATTY	3 cut(s)	29, 143, 850
XmiI	GTMKAC	1 cut(s)	717
XspI	CTAG	1 cut(s)	707
ZraI	GACGTC	1 cut(s)	358
ZrmI	AGTACT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.