Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015109

Physical Location & Seq

Genomic Coordinates Reverse (-)

21288850 .. 21291928

Gene Structure 3079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGAGGGACGACAGAGAAAGAGGAGAGGGTGATTTGTCATGGCCTTTGATCGGAGAGAAAAGTAGTGTCAAGGAAGAAGTGAAGAAGCAGCTATGGCTTTCAGGCCCACTCATCGCCGTGAGTCTTCTTCAGTTTTGTCTACAAGTTATCTCCGTCATGTTCGTTGGCCATCTTGGCTCTCTTCCTCTCTCCGCCGCATCCATCGCCACCTCTTTCGCCTCCGTCACCGGTTTCAGCTTCCTCATGGGAACAGCAAGTGCGTTAGATACGCTTTGTGGCCAAGCGTACGGAGCAAAGAAGTACGGAATGTTAGGAATACAAATGCAAAGAGCTATGTTTGTTCTTACACTAGCTTCTATTCCTCTCTCCATCATTTGGGCTAACACAGAGCACCTTCTCGTCTTCTTTGGACAAAACAAATCCATTGCTACACTCGCTGGCTCCTACGCAAAATTCATGATCCCAAGCATCTTCGCCTACGGTCTTCTTCAATGCTTTAACAGGTTCTTGCAGGCCCAAAACAATGTGTTTCCTGTGGTTTTCTGCTCTGGAGTAACAACTTCTCTACATGTCCTCCTTTGTTGGGTCTTGGTTTTCAAATCTGGTTTAGGGTTTCAAGGAGCTGCTCTTGCCAACTCCATTTCGTATTGGCTTAATGTCGTTCTCTTGTTCTGTTACGTCAAGTTTTCGCCTTCTTGCTCACTAACTTGGACCGGTTTCTCTAAGGAGGCTCTACGCGATATCCTCCCTTTTCTGAGACTAGCTGTTCCTTCTGCACTTATGGTCTGCTTAGAGATGTGGTCCTTTGAACTTTTAGTTCTCTTATCAGGACTTCTTCCAAACCCGGTTCTAGAAACTTCTGTTCTCTCAATCTGCCTTAATACATCAGGAACAATGTGGATGATCCCATTTGGTCTAAGTGGCGCTGCAAGCACGAGGATCTCAAATGAATTAGGAGCGGGTAACCCGAAAGTGGCTAAGCTTGCGGTGCGTGTGGTCATTTGCATTGCAGTAGCAGAAAGTATAGTGATCGGATCAGTCTTGATATTGATAAGGAATATATGGGGATTAGCTTATAGTAGTGAACTAGAAGTAGTCAGCTACGTAGCCTCGATGATGCCAATTCTCGCCTTAGGAAATTTTCTAGACAGTCTTCAATGCGTTCTCTCAGGGGTTGCTAGAGGATGTGGATGGCAGAAGATAGGAGCAATCATTAATCTTGGTTCATATTATCTTGTTGGAGTTCCTTCAGGATTGTTACTTGCTTTTCACTTTCACGTTGGTGGTCGGGGGCTTTGGCTTGGAATCATATGTGCCCTCGTTGTTCAAGTTTTTGGTCTTGGCCTCGTCACTATTTTTACAAATTGGGATGAAGAGGCCAAGAAAGCTACAAACAGAATTGAGTCTTCTTCAAGTGTGAAAGATTTTGCAGTCGATGACAGATCAGTTGTTGTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

486

Amino Acids

52.47

Weight (kDa)

8.37

Isoelectric Point (pI)

25.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	36 - 196	1.8e-39	MatE
MatE	PF01554	257 - 418	2.2e-28	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52450
fragaria_vesca	FvH4_5g16890 FvH4_5g16890
malus_domestica	MD06G1222800.v1.1
prunus_persica	Prupe.5G227700_v2.0.a1
pyrus_communis	pycom06g19860
rosa_chinensis	RchiOBHm_Chr7g0179161
rosa_laevigata	RLG00000005380
rosa_multiflora	Rmu_sc0000888.1_g000021
rosa_roxburghii	Rroxscaffold_3G00274250
rosa_rugosa	Rorug06G0421700
rosa_samantha	Rh7AG020600 Rh7BG020900 Rh7CG022000 Rh7DG021500
rosa_wichuraiana	Rw7G001740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	375
AccBSI	CCGCTC	1 cut(s)	959
AccI	GTMKAC	1 cut(s)	139
AccII	CGCG	1 cut(s)	738
AciI	CCGC	4 cut(s)	192, 195, 959, 986
AclWI	GGATC	4 cut(s)	454, 898, 947, 1042
AcoI	YGGCCR	2 cut(s)	166, 277
AcsI	RAATTY	2 cut(s)	452, 1138
AcuI	CTGAAG	2 cut(s)	113, 1233
AfaI	GTAC	2 cut(s)	287, 302
AfiI	CCNNNNNNNGG	4 cut(s)	50, 375, 583, 973
AflIII	ACRYGT	1 cut(s)	568
AgeI	ACCGGT	2 cut(s)	227, 713
AgsI	TTSAA	7 cut(s)	491, 598, 617, 809, 1157, 1328, 1413
AleI	CACNNNNGTG	1 cut(s)	1281
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	751
AlwI	GGATC	4 cut(s)	454, 898, 947, 1042
AoxI	GGCC	7 cut(s)	41, 103, 166, 277, 513, 1342, 1377
ApeKI	GCWGC	3 cut(s)	88, 623, 926
ApoI	RAATTY	2 cut(s)	452, 1138
AseI	ATTAAT	1 cut(s)	1215
AsiGI	ACCGGT	2 cut(s)	227, 713
AspLEI	GCGC	1 cut(s)	926
AspS9I	GGNCC	4 cut(s)	104, 514, 711, 801
AsuC2I	CCSGG	1 cut(s)	845
AsuHPI	GGTGA	2 cut(s)	41, 217
AvaII	GGWCC	2 cut(s)	711, 801
AxyI	CCTNAGG	1 cut(s)	1132
BaeGI	GKGCMC	1 cut(s)	1318
BalI	TGGCCA	2 cut(s)	168, 279
BauI	CACGAG	1 cut(s)	934
BbsI	GAAGAC	5 cut(s)	116, 394, 476, 1145, 1398
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	3 cut(s)	100, 610, 913
BccI	CCATC	4 cut(s)	177, 209, 377, 1185
BceAI	ACGGC	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	845
BcoDI	GTCTC	1 cut(s)	751
BfaI	CTAG	6 cut(s)	350, 761, 851, 1088, 1145, 1179
BfoI	RGCGCY	1 cut(s)	927
BglI	GCCNNNNNGGC	1 cut(s)	174
BisI	GCNGC	4 cut(s)	89, 195, 624, 927
BlpI	GCTNAGC	1 cut(s)	978
BlsI	GCNGC	4 cut(s)	90, 196, 625, 928
Bme1390I	CCNGG	1 cut(s)	845
Bme18I	GGWCC	2 cut(s)	711, 801
BmgT120I	GGNCC	4 cut(s)	104, 514, 711, 801
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	1 cut(s)	845
BmsI	GCATC	3 cut(s)	206, 477, 1107
BpiI	GAAGAC	5 cut(s)	116, 394, 476, 1145, 1398
BpmI	CTGGAG	1 cut(s)	570
Bpu1102I	GCTNAGC	1 cut(s)	978
BpuMI	CCSGG	1 cut(s)	845
BsaAI	YACGTR	1 cut(s)	1105
BsaWI	WCCGGW	2 cut(s)	227, 713
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 375, 583, 973
Bse118I	RCCGGY	2 cut(s)	227, 713
Bse21I	CCTNAGG	1 cut(s)	1132
Bse3DI	GCAATG	2 cut(s)	423, 1005
BseGI	GGATG	5 cut(s)	197, 906, 1190, 1196, 1375
BseLI	CCNNNNNNNGG	4 cut(s)	50, 375, 583, 973
BseMI	GCAATG	2 cut(s)	423, 1005
BseMII	CTCAG	2 cut(s)	746, 1182
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	1318
BseXI	GCAGC	3 cut(s)	100, 610, 913
BsgI	GTGCAG	1 cut(s)	759
Bsh1236I	CGCG	1 cut(s)	738
BshFI	GGCC	7 cut(s)	43, 105, 168, 279, 515, 1344, 1379
BshTI	ACCGGT	2 cut(s)	227, 713
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	3 cut(s)	228, 714, 845
BsiWI	CGTACG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	4 cut(s)	50, 375, 583, 973
BsmAI	GTCTC	1 cut(s)	751
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	7 cut(s)	43, 105, 168, 279, 515, 1344, 1379
Bsp1286I	GDGCHC	2 cut(s)	393, 1318
Bsp143I	GATC	7 cut(s)	48, 459, 903, 939, 1029, 1034, 1442
Bsp1720I	GCTNAGC	1 cut(s)	978
BspACI	CCGC	4 cut(s)	192, 195, 959, 986
BspANI	GGCC	7 cut(s)	43, 105, 168, 279, 515, 1344, 1379
BspCNI	CTCAG	2 cut(s)	747, 1181
BspFNI	CGCG	1 cut(s)	738
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	442
BspPI	GGATC	4 cut(s)	454, 898, 947, 1042
BsrBI	CCGCTC	1 cut(s)	959
BsrDI	GCAATG	2 cut(s)	423, 1005
BsrFI	RCCGGY	2 cut(s)	227, 713
BssAI	RCCGGY	2 cut(s)	227, 713
BssMI	GATC	7 cut(s)	48, 459, 903, 939, 1029, 1034, 1442
BssSI	CACGAG	1 cut(s)	934
Bst2BI	CACGAG	1 cut(s)	934
Bst4CI	ACNGT	2 cut(s)	482, 1151
Bst6I	CTCTTC	2 cut(s)	186, 1368
BstBAI	YACGTR	1 cut(s)	1105
BstC8I	GCNNGC	4 cut(s)	439, 513, 931, 984
BstDEI	CTNAG	7 cut(s)	723, 755, 790, 917, 978, 1132, 1168
BstEII	GGTNACC	1 cut(s)	962
BstF5I	GGATG	5 cut(s)	197, 906, 1190, 1196, 1375
BstFNI	CGCG	1 cut(s)	738
BstH2I	RGCGCY	1 cut(s)	927
BstHHI	GCGC	1 cut(s)	926
BstKTI	GATC	7 cut(s)	51, 462, 906, 942, 1032, 1037, 1445
BstMAI	GTCTC	1 cut(s)	751
BstMBI	GATC	7 cut(s)	48, 459, 903, 939, 1029, 1034, 1442
BstNSI	RCATGY	1 cut(s)	572
BstPI	GGTNACC	1 cut(s)	962
BstSCI	CCNGG	1 cut(s)	843
BstSLI	GKGCMC	1 cut(s)	1318
BstSNI	TACGTA	1 cut(s)	1105
BstUI	CGCG	1 cut(s)	738
BstV1I	GCAGC	3 cut(s)	100, 610, 913
BstV2I	GAAGAC	5 cut(s)	116, 394, 476, 1145, 1398
BstX2I	RGATCY	1 cut(s)	939
BstYI	RGATCY	1 cut(s)	939
Bsu36I	CCTNAGG	1 cut(s)	1132
BsuRI	GGCC	7 cut(s)	43, 105, 168, 279, 515, 1344, 1379
BtgZI	GCGATG	2 cut(s)	97, 187
BtsCI	GGATG	5 cut(s)	197, 906, 1190, 1196, 1375
Cac8I	GCNNGC	4 cut(s)	439, 513, 931, 984
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	1 cut(s)	926
Cfr10I	RCCGGY	2 cut(s)	227, 713
Cfr13I	GGNCC	4 cut(s)	104, 514, 711, 801
Csp6I	GTAC	2 cut(s)	286, 301
CspAI	ACCGGT	2 cut(s)	227, 713
CviAII	CATG	5 cut(s)	39, 157, 244, 457, 569
CviQI	GTAC	2 cut(s)	286, 301
DdeI	CTNAG	7 cut(s)	723, 755, 790, 917, 978, 1132, 1168
DpnI	GATC	7 cut(s)	50, 461, 905, 941, 1031, 1036, 1444
DpnII	GATC	7 cut(s)	48, 459, 903, 939, 1029, 1034, 1442
EaeI	YGGCCR	2 cut(s)	166, 277
Eam1104I	CTCTTC	2 cut(s)	186, 1368
EarI	CTCTTC	2 cut(s)	186, 1368
EciI	GGCGGA	1 cut(s)	181
Eco105I	TACGTA	1 cut(s)	1105
Eco32I	GATATC	1 cut(s)	742
Eco47I	GGWCC	2 cut(s)	711, 801
Eco57I	CTGAAG	2 cut(s)	113, 1233
Eco81I	CCTNAGG	1 cut(s)	1132
Eco91I	GGTNACC	1 cut(s)	962
EcoO65I	GGTNACC	1 cut(s)	962
EcoRV	GATATC	1 cut(s)	742
FaeI	CATG	5 cut(s)	42, 160, 247, 460, 572
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	5 cut(s)	38, 156, 243, 456, 568
FauI	CCCGC	1 cut(s)	952
FauNDI	CATATG	1 cut(s)	1310
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	4 cut(s)	89, 195, 624, 927
FokI	GGATG	5 cut(s)	184, 913, 1197, 1203, 1382
Fsp4HI	GCNGC	4 cut(s)	89, 195, 624, 927
FspBI	CTAG	6 cut(s)	350, 761, 851, 1088, 1145, 1179
GlaI	GCGC	1 cut(s)	925
GluI	GCNGC	4 cut(s)	89, 195, 624, 927
GsuI	CTGGAG	1 cut(s)	570
HaeII	RGCGCY	1 cut(s)	927
HaeIII	GGCC	7 cut(s)	43, 105, 168, 279, 515, 1344, 1379
HapII	CCGG	3 cut(s)	228, 714, 845
HhaI	GCGC	1 cut(s)	926
Hin1II	CATG	5 cut(s)	42, 160, 247, 460, 572
Hin6I	GCGC	1 cut(s)	924
HinP1I	GCGC	1 cut(s)	924
HindIII	AAGCTT	1 cut(s)	980
HinfI	GANTC	3 cut(s)	121, 1305, 1403
HpaII	CCGG	3 cut(s)	228, 714, 845
HphI	GGTGA	2 cut(s)	41, 217
Hpy166II	GTNNAC	2 cut(s)	140, 1085
Hpy188I	TCNGA	3 cut(s)	53, 756, 1034
Hpy188III	TCNNGA	8 cut(s)	457, 549, 828, 851, 888, 1042, 1145, 1251
Hpy8I	GTNNAC	2 cut(s)	140, 1085
HpyAV	CCTTC	4 cut(s)	404, 702, 780, 1257
HpyCH4III	ACNGT	2 cut(s)	482, 1151
HpyCH4IV	ACGT	3 cut(s)	678, 1104, 1278
HpyCH4V	TGCA	7 cut(s)	325, 511, 776, 929, 1005, 1010, 1430
HpyF3I	CTNAG	7 cut(s)	723, 755, 790, 917, 978, 1132, 1168
HpySE526I	ACGT	3 cut(s)	678, 1104, 1278
Hsp92II	CATG	5 cut(s)	42, 160, 247, 460, 572
HspAI	GCGC	1 cut(s)	924
Kzo9I	GATC	7 cut(s)	48, 459, 903, 939, 1029, 1034, 1442
LmnI	GCTCC	5 cut(s)	290, 446, 620, 956, 1205
Lsp1109I	GCAGC	3 cut(s)	100, 610, 913
LweI	GCATC	3 cut(s)	206, 477, 1107
MaeI	CTAG	6 cut(s)	350, 761, 851, 1088, 1145, 1179
MaeII	ACGT	3 cut(s)	678, 1104, 1278
MaeIII	GTNAC	6 cut(s)	223, 553, 674, 962, 1257, 1348
MalI	GATC	7 cut(s)	50, 461, 905, 941, 1031, 1036, 1444
MbiI	CCGCTC	1 cut(s)	959
MboI	GATC	7 cut(s)	48, 459, 903, 939, 1029, 1034, 1442
MflI	RGATCY	1 cut(s)	939
MhlI	GDGCHC	2 cut(s)	393, 1318
MlsI	TGGCCA	2 cut(s)	168, 279
MluCI	AATT	6 cut(s)	452, 950, 1122, 1138, 1363, 1398
MluNI	TGGCCA	2 cut(s)	168, 279
MlyI	GAGTC	2 cut(s)	130, 1412
MmeI	TCCRAC	1 cut(s)	1219
Mox20I	TGGCCA	2 cut(s)	168, 279
MscI	TGGCCA	2 cut(s)	168, 279
MseI	TTAA	4 cut(s)	498, 654, 879, 1215
MslI	CAYNNNNRTG	2 cut(s)	116, 1281
Msp20I	TGGCCA	2 cut(s)	168, 279
MspI	CCGG	3 cut(s)	228, 714, 845
MspR9I	CCNGG	1 cut(s)	845
MvnI	CGCG	1 cut(s)	738
NciI	CCSGG	1 cut(s)	845
NdeI	CATATG	1 cut(s)	1310
NdeII	GATC	7 cut(s)	48, 459, 903, 939, 1029, 1034, 1442
NlaIII	CATG	5 cut(s)	42, 160, 247, 460, 572
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	2 cut(s)	223, 1348
NspI	RCATGY	1 cut(s)	572
OliI	CACNNNNGTG	1 cut(s)	1281
PagI	TCATGA	1 cut(s)	456
PciI	ACATGT	1 cut(s)	568
PfeI	GAWTC	1 cut(s)	1305
Pfl23II	CGTACG	1 cut(s)	285
PflMI	CCANNNNNTGG	1 cut(s)	375
PinAI	ACCGGT	2 cut(s)	227, 713
PkrI	GCNGC	4 cut(s)	90, 196, 625, 928
PleI	GAGTC	2 cut(s)	129, 1411
PpsI	GAGTC	2 cut(s)	129, 1411
Ppu21I	YACGTR	1 cut(s)	1105
PscI	ACATGT	1 cut(s)	568
PshBI	ATTAAT	1 cut(s)	1215
PspEI	GGTNACC	1 cut(s)	962
PspLI	CGTACG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	4 cut(s)	104, 514, 711, 801
PsuI	RGATCY	1 cut(s)	939
RsaI	GTAC	2 cut(s)	287, 302
RsaNI	GTAC	2 cut(s)	286, 301
RseI	CAYNNNNRTG	2 cut(s)	116, 1281
SaqAI	TTAA	4 cut(s)	498, 654, 879, 1215
SatI	GCNGC	4 cut(s)	89, 195, 624, 927
Sau3AI	GATC	7 cut(s)	48, 459, 903, 939, 1029, 1034, 1442
Sau96I	GGNCC	4 cut(s)	104, 514, 711, 801
SchI	GAGTC	2 cut(s)	130, 1412
ScrFI	CCNGG	1 cut(s)	845
SduI	GDGCHC	2 cut(s)	393, 1318
SfaNI	GCATC	3 cut(s)	206, 477, 1107
SinI	GGWCC	2 cut(s)	711, 801
SmiMI	CAYNNNNRTG	2 cut(s)	116, 1281
SnaBI	TACGTA	1 cut(s)	1105
Sse9I	AATT	6 cut(s)	452, 950, 1122, 1138, 1363, 1398
SsiI	CCGC	4 cut(s)	192, 195, 959, 986
SspMI	CTAG	6 cut(s)	350, 761, 851, 1088, 1145, 1179
StyD4I	CCNGG	1 cut(s)	843
TaaI	ACNGT	2 cut(s)	482, 1151
TaiI	ACGT	3 cut(s)	681, 1107, 1281
TaqI	TCGA	2 cut(s)	1112, 1434
TasI	AATT	6 cut(s)	452, 950, 1122, 1138, 1363, 1398
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	1305
Tru1I	TTAA	4 cut(s)	498, 654, 879, 1215
Tru9I	TTAA	4 cut(s)	498, 654, 879, 1215
TseFI	GTSAC	2 cut(s)	223, 1348
TseI	GCWGC	3 cut(s)	88, 623, 926
Tsp45I	GTSAC	2 cut(s)	223, 1348
TspDTI	ATGAA	4 cut(s)	445, 963, 1215, 1386
TspGWI	ACGGA	4 cut(s)	142, 211, 303, 318
Van91I	CCANNNNNTGG	1 cut(s)	375
VpaK11BI	GGWCC	2 cut(s)	711, 801
VspI	ATTAAT	1 cut(s)	1215
XapI	RAATTY	2 cut(s)	452, 1138
XbaI	TCTAGA	2 cut(s)	850, 1144
XceI	RCATGY	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	139
XspI	CTAG	6 cut(s)	350, 761, 851, 1088, 1145, 1179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.