Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001096

Physical Location & Seq

Genomic Coordinates Forward (+)

56006421 .. 56009120

Gene Structure 2700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0421700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGACGTCGATCCTAGTAACTACAATCAACTTGCTATCAATGAGAACGACACTCATAGTGTTGTCCTATCATATCTGGTGCACAACTGTTATATAGAAACTGTGGAGTCATTTGTTGCTTCTACGGGGATGAAGCAGCCTGCCGATTGTATTGATGATATGGAGAAAAGGAAAAGGATTTATCATTGTGCAGTGGAGGGGAATGCTCTTAAGGCGATTGAACTGACAGAACAGCTGGCGAATGACTTACTGGAGAAAAATAAAGACTTGCATTTTGATCTTCTCAGCCTTCACTTTGTTGAACTTGTTTGCTCTAGAAAATGCACAGAAGCTTTGGAATTTGCCCAGACCAATTTGACCCCCTTTGGGAAGGTGGAAAAATACGTTGAAAAACTCGAAGACTTCATGGCTCTTCTTGCTTACGAAGAGCCGGAGAAATCCCCAATGTTTCATTTGCTTAGCAAGGATTATCGGCAGCAAGTTGCAGATAGTTTGAATCGAGCAATTCTAGCACATTCAAACCTTCCCAGTTATACAGCAATGGAAAGGCTAATACAACAGACAATAGCAGTTAAGCAATTTATAAGTGAAGACAATGCCAAGAATGGGTCACAACCATTTTCTTTGAAGGATTTTCTTAGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

215

Amino Acids

24.5

Weight (kDa)

5.0

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	54 - 192	2.9e-33	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18170 AT3G18170 AT3G18180
fragaria_vesca	FvH4_5g16870 FvH4_5g16880
malus_domestica	MD06G1222600.v1.1 MD06G1222700.v1.1
prunus_persica	Prupe.5G227200_v2.0.a1 Prupe.5G227600_v2.0.a1
pyrus_communis	pycom06g19850
rosa_chinensis	RchiOBHm_Chr7g0179171 RchiOBHm_Chr7g0179181 RchiOBHm_Chr7g0179191 RchiOBHm_Chr7g0179201
rosa_laevigata	RLG00000005375 RLG00000005376 RLG00000005377 RLG00000005378 RLG00000005379
rosa_multiflora	Rmu_sc0000888.1_g000022 Rmu_sc0000888.1_g000023 Rmu_sc0000888.1_g000024 Rmu_sc0000888.1_g000025 Rmu_sc0000888.1_g000026 Rmu_sc0009798.1_g000006 Rmu_sc0009798.1_g000007 Rmu_sc0009798.1_g000008 Rmu_sc0021799.1_g000002
rosa_roxburghii	Rroxscaffold_3G00274230 Rroxscaffold_3G00274240
rosa_rugosa	Rorug06G0421700 Rorug06G0421800 Rorug06G0421800 Rorug06G0422000 Rorug06G0422100
rosa_samantha	Rh7AG020800 Rh7AG020900 Rh7AG021000 Rh7AG021100 Rh7AG021200 Rh7AG021300 Rh7AG021400 Rh7BG021000 Rh7BG021100 Rh7BG021200 Rh7BG021300 Rh7BG021400 Rh7CG022100 Rh7CG022300 Rh7CG022400 Rh7CG022500 Rh7CG022600 Rh7DG021600 Rh7DG021700 Rh7DG021800 Rh7DG021900 Rh7DG022000
rosa_wichuraiana	Rw7G001750 Rw7G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AatII	GACGTC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	6
AfiI	CCNNNNNNNGG	2 cut(s)	366, 606
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	6 cut(s)	221, 302, 389, 496, 519, 628
AluBI	AGCT	3 cut(s)	235, 332, 645
AluI	AGCT	3 cut(s)	235, 332, 645
Alw21I	GWGCWC	1 cut(s)	84
Alw44I	GTGCAC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	5
ApaLI	GTGCAC	1 cut(s)	80
ApeKI	GCWGC	3 cut(s)	136, 475, 642
ApoI	RAATTY	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
BaeGI	GKGCMC	1 cut(s)	84
BbsI	GAAGAC	2 cut(s)	405, 597
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	148, 487
BfaI	CTAG	3 cut(s)	15, 315, 509
BfrI	CTTAAG	1 cut(s)	209
BisI	GCNGC	3 cut(s)	137, 476, 643
BlpI	GCTNAGC	1 cut(s)	458
BlsI	GCNGC	3 cut(s)	138, 477, 644
BmrI	ACTGGG	1 cut(s)	522
BmuI	ACTGGG	1 cut(s)	522
BpiI	GAAGAC	2 cut(s)	405, 597
BpmI	CTGGAG	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	458
BsaHI	GRCGYC	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 606
Bse1I	ACTGG	2 cut(s)	255, 528
Bse3DI	GCAATG	1 cut(s)	546
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	366, 606
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	298
BseNI	ACTGG	2 cut(s)	255, 528
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	2 cut(s)	148, 487
BsgI	GTGCAG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	431
BslI	CCNNNNNNNGG	2 cut(s)	366, 606
BsmI	GAATGC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	10, 277
Bsp1720I	GCTNAGC	1 cut(s)	458
BspCNI	CTCAG	1 cut(s)	297
BspPI	GGATC	1 cut(s)	5
BspQI	GCTCTTC	2 cut(s)	417, 420
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	2 cut(s)	255, 528
BssMI	GATC	2 cut(s)	10, 277
BssNI	GRCGYC	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	89, 103
Bst6I	CTCTTC	2 cut(s)	417, 420
BstACI	GRCGYC	1 cut(s)	6
BstAFI	CTTAAG	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	141, 237
BstDEI	CTNAG	3 cut(s)	284, 458, 638
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	2 cut(s)	13, 280
BstMBI	GATC	2 cut(s)	10, 277
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 416, 509
BstSLI	GKGCMC	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	148, 487
BstV2I	GAAGAC	2 cut(s)	405, 597
BtsCI	GGATG	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	141, 237
CviAII	CATG	1 cut(s)	406
CviJI	RGCY	8 cut(s)	139, 235, 288, 332, 410, 430, 550, 645
CviKI_1	RGCY	8 cut(s)	139, 235, 288, 332, 410, 430, 550, 645
DdeI	CTNAG	3 cut(s)	284, 458, 638
DpnI	GATC	2 cut(s)	12, 279
DpnII	GATC	2 cut(s)	10, 277
Eam1104I	CTCTTC	2 cut(s)	417, 420
EarI	CTCTTC	2 cut(s)	417, 420
FaeI	CATG	1 cut(s)	409
FaiI	YATR	8 cut(s)	57, 73, 93, 95, 161, 407, 534, 584
FatI	CATG	1 cut(s)	405
Fnu4HI	GCNGC	3 cut(s)	137, 476, 643
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	3 cut(s)	137, 476, 643
FspBI	CTAG	3 cut(s)	15, 315, 509
GluI	GCNGC	3 cut(s)	137, 476, 643
GsuI	CTGGAG	1 cut(s)	272
HapII	CCGG	1 cut(s)	431
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	2 cut(s)	107, 496
HpaII	CCGG	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	315
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	4 cut(s)	299, 364, 533, 622
HpyCH4III	ACNGT	2 cut(s)	89, 103
HpyCH4IV	ACGT	2 cut(s)	6, 384
HpyCH4V	TGCA	5 cut(s)	82, 191, 271, 324, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 416, 509
HpyF3I	CTNAG	3 cut(s)	284, 458, 638
HpySE526I	ACGT	2 cut(s)	6, 384
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	409
Kzo9I	GATC	2 cut(s)	10, 277
LguI	GCTCTTC	2 cut(s)	417, 420
LpnPI	CCDG	7 cut(s)	62, 153, 221, 236, 359, 444, 541
Lsp1109I	GCAGC	2 cut(s)	148, 487
MaeI	CTAG	3 cut(s)	15, 315, 509
MaeII	ACGT	2 cut(s)	6, 384
MaeIII	GTNAC	2 cut(s)	17, 609
MalI	GATC	2 cut(s)	12, 279
MboI	GATC	2 cut(s)	10, 277
MboII	GAAGA	5 cut(s)	272, 404, 410, 437, 602
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	4 cut(s)	338, 352, 504, 578
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	1 cut(s)	190
MseI	TTAA	2 cut(s)	210, 573
MspA1I	CMGCKG	1 cut(s)	235
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	208
MwoI	GCNNNNNNNGC	3 cut(s)	212, 416, 509
NdeII	GATC	2 cut(s)	10, 277
NlaIII	CATG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	609
PciSI	GCTCTTC	2 cut(s)	417, 420
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	496
PkrI	GCNGC	3 cut(s)	138, 477, 644
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PsiI	TTATAA	1 cut(s)	584
PvuII	CAGCTG	1 cut(s)	235
SapI	GCTCTTC	2 cut(s)	417, 420
SaqAI	TTAA	2 cut(s)	210, 573
SatI	GCNGC	3 cut(s)	137, 476, 643
Sau3AI	GATC	2 cut(s)	10, 277
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	7 cut(s)	9, 237, 334, 375, 387, 525, 647
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	4 cut(s)	338, 352, 504, 578
SspMI	CTAG	3 cut(s)	15, 315, 509
TaaI	ACNGT	2 cut(s)	89, 103
TaiI	ACGT	2 cut(s)	9, 387
TaqI	TCGA	3 cut(s)	9, 396, 499
TasI	AATT	4 cut(s)	338, 352, 504, 578
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	2 cut(s)	210, 573
Tru9I	TTAA	2 cut(s)	210, 573
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	609
TseI	GCWGC	3 cut(s)	136, 475, 642
Tsp45I	GTSAC	1 cut(s)	609
TspDTI	ATGAA	3 cut(s)	146, 394, 440
TspRI	CASTG	1 cut(s)	198
Vha464I	CTTAAG	1 cut(s)	209
VneI	GTGCAC	1 cut(s)	80
XapI	RAATTY	1 cut(s)	338
XbaI	TCTAGA	1 cut(s)	314
XspI	CTAG	3 cut(s)	15, 315, 509
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.