Rmu_sc0009798.1_g000006

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009798.1
OG0001096
Physical Location & Seq
Reverse (-)
21123 .. 21776
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009798.1_g000006.1.cds

Sequence Viewer

Length: 654 bp
atgtggttattccgctttcaatttctcatcactgacaaacgatcttggtggattacaaaggacaaagcagtactacaaggactatccgagtatgaggctattaacattgatgaagatcgatgtagtccccactgcttcccaagcacaacagttggccttaaacgacatcccaaggatctgatccttgatccttcactatattcctattctatgaaaagagatttcctaggaaacacatattccttgaacaaagctaatgcaatcagaatccgagatggtcaacgtaaaaaaccccgactcctgatcatatctagaaggagaacgaggcctttcacaaatacagaggaaattactaagatggctagaagcttgggatatgaggtaactgttgcagaggctgacaaaaacatgtcaaaaatcgcagaagttgtgaattctagtgatgtgttaatgggagtccatggagctggccttgcaaacattcttttccatcctgaaaatgcaatttttattcaaatacttcctgtaggaggattcgaatggactgcagcaaactacttccgagagccttcaagagatatgaatctgaagtatttggaatacaagataagcaaggagagcataatggaaagtgaaccccaattgaataaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

217

Amino Acids

25.11

Weight (kDa)

9.26

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 13
AclWI GGATC 3 cut(s) 175, 182, 183
AcsI RAATTY 1 cut(s) 433
AcuI CTGAAG 1 cut(s) 608
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 530
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 5 cut(s) 20, 247, 515, 573, 646
AluBI AGCT 3 cut(s) 254, 369, 467
AluI AGCT 3 cut(s) 254, 369, 467
AlwI GGATC 3 cut(s) 175, 182, 183
AlwNI CAGNNNCTG 1 cut(s) 398
AoxI GGCC 3 cut(s) 154, 326, 469
ApeKI GCWGC 1 cut(s) 548
ApoI RAATTY 1 cut(s) 433
AspA2I CCTAGG 1 cut(s) 226
AsuII TTCGAA 1 cut(s) 537
AvrII CCTAGG 1 cut(s) 226
BbvI GCAGC 1 cut(s) 560
BccI CCATC 3 cut(s) 269, 352, 498
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BclI TGATCA 1 cut(s) 303
BfaI CTAG 4 cut(s) 227, 312, 363, 438
BfmI CTRYAG 2 cut(s) 525, 546
BisI GCNGC 1 cut(s) 549
BlnI CCTAGG 1 cut(s) 226
BlsI GCNGC 1 cut(s) 550
BmcAI AGTACT 1 cut(s) 72
Bpu14I TTCGAA 1 cut(s) 537
Bsa29I ATCGAT 1 cut(s) 118
BsaBI GATNNNNATC 2 cut(s) 114, 582
BsaJI CCNNGG 3 cut(s) 171, 226, 460
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 530
Bse8I GATNNNNATC 2 cut(s) 114, 582
BseCI ATCGAT 1 cut(s) 118
BseDI CCNNGG 3 cut(s) 171, 226, 460
BseGI GGATG 2 cut(s) 166, 490
BseJI GATNNNNATC 2 cut(s) 114, 582
BseLI CCNNNNNNNGG 1 cut(s) 530
BseXI GCAGC 1 cut(s) 560
BshFI GGCC 3 cut(s) 156, 328, 471
BshVI ATCGAT 1 cut(s) 118
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 530
BsmFI GGGAC 1 cut(s) 111
BsnI GGCC 3 cut(s) 156, 328, 471
Bsp119I TTCGAA 1 cut(s) 537
Bsp143I GATC 6 cut(s) 41, 115, 175, 180, 187, 303
Bsp19I CCATGG 1 cut(s) 460
BspACI CCGC 1 cut(s) 13
BspANI GGCC 3 cut(s) 156, 328, 471
BspDI ATCGAT 1 cut(s) 118
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 3 cut(s) 175, 182, 183
BspT104I TTCGAA 1 cut(s) 537
BssECI CCNNGG 3 cut(s) 171, 226, 460
BssMI GATC 6 cut(s) 41, 115, 175, 180, 187, 303
BssT1I CCWWGG 3 cut(s) 171, 226, 460
Bst4CI ACNGT 2 cut(s) 151, 388
BstBI TTCGAA 1 cut(s) 537
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 1 cut(s) 354
BstDSI CCRYGG 1 cut(s) 460
BstENI CCTNNNNNAGG 1 cut(s) 528
BstF5I GGATG 2 cut(s) 166, 490
BstKTI GATC 6 cut(s) 44, 118, 178, 183, 190, 306
BstMBI GATC 6 cut(s) 41, 115, 175, 180, 187, 303
BstMWI GCNNNNNNNGC 3 cut(s) 141, 473, 618
BstNSI RCATGY 1 cut(s) 412
BstSFI CTRYAG 2 cut(s) 525, 546
BstV1I GCAGC 1 cut(s) 560
BstX2I RGATCY 1 cut(s) 175
BstXI CCANNNNNNTGG 1 cut(s) 467
BstYI RGATCY 1 cut(s) 175
Bsu15I ATCGAT 1 cut(s) 118
BsuRI GGCC 3 cut(s) 156, 328, 471
BsuTUI ATCGAT 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 460
BtsCI GGATG 2 cut(s) 166, 490
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 30, 130
Cac8I GCNNGC 1 cut(s) 469
CaiI CAGNNNCTG 1 cut(s) 398
ClaI ATCGAT 1 cut(s) 118
Csp6I GTAC 1 cut(s) 71
CviAII CATG 2 cut(s) 409, 461
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 354
DpnI GATC 6 cut(s) 43, 117, 177, 182, 189, 305
DpnII GATC 6 cut(s) 41, 115, 175, 180, 187, 303
Eco130I CCWWGG 3 cut(s) 171, 226, 460
Eco147I AGGCCT 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 608
EcoNI CCTNNNNNAGG 1 cut(s) 528
EcoRI GAATTC 1 cut(s) 433
EcoT14I CCWWGG 3 cut(s) 171, 226, 460
ErhI CCWWGG 3 cut(s) 171, 226, 460
FaeI CATG 2 cut(s) 412, 464
FaqI GGGAC 1 cut(s) 111
FatI CATG 2 cut(s) 408, 460
FbaI TGATCA 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 549
FokI GGATG 2 cut(s) 153, 477
Fsp4HI GCNGC 1 cut(s) 549
FspBI CTAG 4 cut(s) 227, 312, 363, 438
GluI GCNGC 1 cut(s) 549
HaeIII GGCC 3 cut(s) 156, 328, 471
Hin1II CATG 2 cut(s) 412, 464
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 5 cut(s) 267, 297, 456, 534, 583
Hpy166II GTNNAC 2 cut(s) 281, 635
Hpy188I TCNGA 6 cut(s) 88, 180, 266, 272, 563, 588
Hpy188III TCNNGA 4 cut(s) 301, 312, 494, 573
Hpy8I GTNNAC 2 cut(s) 281, 635
HpyAV CCTTC 3 cut(s) 201, 309, 579
HpyCH4III ACNGT 2 cut(s) 151, 388
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 5 cut(s) 260, 392, 476, 503, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 473, 618
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 2 cut(s) 412, 464
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 6 cut(s) 41, 115, 175, 180, 187, 303
LmnI GCTCC 1 cut(s) 464
LpnPI CCDG 4 cut(s) 314, 453, 507, 537
Lsp1109I GCAGC 1 cut(s) 560
MaeI CTAG 4 cut(s) 227, 312, 363, 438
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 382
MalI GATC 6 cut(s) 43, 117, 177, 182, 189, 305
MboI GATC 6 cut(s) 41, 115, 175, 180, 187, 303
MboII GAAGA 1 cut(s) 125
MfeI CAATTG 1 cut(s) 641
MflI RGATCY 1 cut(s) 175
MluCI AATT 5 cut(s) 20, 348, 433, 504, 641
MlyI GAGTC 2 cut(s) 291, 465
MnlI CCTC 6 cut(s) 88, 318, 337, 373, 388, 524
MseI TTAA 3 cut(s) 102, 159, 449
MunI CAATTG 1 cut(s) 641
MwoI GCNNNNNNNGC 3 cut(s) 141, 473, 618
NcoI CCATGG 1 cut(s) 460
NdeII GATC 6 cut(s) 41, 115, 175, 180, 187, 303
NlaIII CATG 2 cut(s) 412, 464
NspI RCATGY 1 cut(s) 412
NspV TTCGAA 1 cut(s) 537
PceI AGGCCT 1 cut(s) 328
PciI ACATGT 1 cut(s) 408
PfeI GAWTC 3 cut(s) 267, 534, 583
PkrI GCNGC 1 cut(s) 550
PleI GAGTC 2 cut(s) 291, 464
PpsI GAGTC 2 cut(s) 291, 464
PscI ACATGT 1 cut(s) 408
PstI CTGCAG 1 cut(s) 550
PstNI CAGNNNCTG 1 cut(s) 398
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 3 cut(s) 102, 159, 449
SatI GCNGC 1 cut(s) 549
Sau3AI GATC 6 cut(s) 41, 115, 175, 180, 187, 303
ScaI AGTACT 1 cut(s) 72
SchI GAGTC 2 cut(s) 291, 465
SetI ASST 5 cut(s) 256, 286, 371, 384, 469
SfcI CTRYAG 2 cut(s) 525, 546
SfuI TTCGAA 1 cut(s) 537
Sse9I AATT 5 cut(s) 20, 348, 433, 504, 641
SseBI AGGCCT 1 cut(s) 328
SsiI CCGC 1 cut(s) 13
SspMI CTAG 4 cut(s) 227, 312, 363, 438
StuI AGGCCT 1 cut(s) 328
StyI CCWWGG 3 cut(s) 171, 226, 460
TaaI ACNGT 2 cut(s) 151, 388
TaiI ACGT 1 cut(s) 286
TaqI TCGA 2 cut(s) 118, 537
TasI AATT 5 cut(s) 20, 348, 433, 504, 641
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 3 cut(s) 267, 534, 583
Tru1I TTAA 3 cut(s) 102, 159, 449
Tru9I TTAA 3 cut(s) 102, 159, 449
TscAI CASTG 2 cut(s) 37, 137
TseI GCWGC 1 cut(s) 548
TspDTI ATGAA 3 cut(s) 126, 227, 596
TspRI CASTG 2 cut(s) 37, 137
XagI CCTNNNNNAGG 1 cut(s) 528
XapI RAATTY 1 cut(s) 433
XbaI TCTAGA 1 cut(s) 311
XceI RCATGY 1 cut(s) 412
XmaJI CCTAGG 1 cut(s) 226
XspI CTAG 4 cut(s) 227, 312, 363, 438
ZrmI AGTACT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.