RchiOBHm_Chr7g0179181

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001096
Physical Location & Seq
Forward (+)
1568607 .. 1570825
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15970

Sequence Viewer

Length: 1626 bp
ATGGGTGTTGATCTCAAAATGCTAGCCCTCAGTGAGACAAAGATATCAGAACCAATTTGCAATGTTATGGAACCAAGATCTGAATTCTGCGAGATTGAGAATAGGGATGTTCGGGTCAATGGAAAAGTGTCCTCAGTGTATGTTGTTTCATCTCAAAGGGAGAATGTGATAGAAGCTGGGAATAACTCATGGAATATAAGACCTTATGCTCGAAAAGACGATGTAAAAGCAATAAGCCTCATTAGGAAATGGTCAGTGAAACAAGTAAGTACTGGTGATCACCAGGAATCGATCCCTAAATGTACCAGAAATCATAGTGTTCCAGCCATCTTGTTTTCTCTTGGTGGATATACATTAAATCAGTACCATGACTTTGCTGATGTGATCATTCCACTCTATGTTACTTCTCGAAAATACAACGGAGAAGTTCAGTTCCTTATCACTGAGAATCGTATTAAGTGGATTCAAAAGTTCCAAGAAATACTAAAAGGACTTTCCAAGTATGAGCTTATTGACATTGACAAAGAATTAGAACAAGTCCATTGCTTTCCAAGCGTAACGGTTGGCCTGAAAACATCTCGCAAGGAAATGACCTTTGATCCTTTGAGATATTCATATTCTATGAAAGACTTCAGAGGGTTTCTAAGAACCACTTATTCATTAAAGAGAGCCAATGCAATCAAAATCAGAGATGGACAGCATCAACTAAAAAAGCCTCGGCTTCTCATCATATCAAGAAACAGAACAAGGTCTTTCACAAATACGGGCGAAATAACTCAGATGGCAAGAGACTTGGGGTACAAGGTAACTGTAGCGGAGGCTGACATGAATGTGTCAAATTTTGCAAATGTTGTGAATTCTTGTGATGTGATGATGGGAGTTCATGGAGCTGGTCTTTTGAACATGCTTTTCCTACCGGAAAATGCAATTTTTATCCAGATAATTCCAGTTGGAAAGTTCCAATGGATTTCGACAACATACTATGGAGGGCCAGCAAAGGATATGAATCTAAAGTATTTGGAATATAAGATAAGCAATGAAGAGAGCACACTGATACAGCAATACCCACTTGATCATGCAGTTTTTACTGACCCCATCTCAATTGGAAAACAAGGGTGGATGGTATTCAAGTCAATCTATCTGAACAAACAAAATGTAAAGCTTAATGTCACTAGGTTTAAACCCACGTTGTTAAAAGCCCTTGAGCTTTTGCAGCACATTCATCGGCTTGAGCAGAAGAGACTAAGATATGGAGCATTTCCTTGTTTCTTCCTGATAGCATTATGCTTTCGCATAGTGCTCGAGCTTGGTCTGATTCGACCAGCTTGTATCTGTCAGTATTCAAAGGTGAACTTGACTGGGAGATGGGAATCGAAAGATATTATAGATGTCAGTCTTGAAGTAGGAGACTTTGGTCTACGGGAAAATGAGAGACATGAACCAGATGCAGAGACAAATATTGCAGAAGTTGTGACAAAGAATTTGGAGCTGATTTGCAATGTTAAGGGATGGAGAAATGTGTTTTGCGAGATCAAAAAGGATGTTCGGGTGGATGGGAAATCGGCTCCAGTGTTTATTGTTTCATCTGAAATGGATCTAGGAAATGGAATAGCTCCTGGACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

541

Amino Acids

61.89

Weight (kDa)

9.01

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 223 - 311 1.9e-11 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1417
AciI CCGC 1 cut(s) 815
AclWI GGATC 3 cut(s) 286, 593, 1602
AcsI RAATTY 4 cut(s) 83, 838, 856, 1480
AcuI CTGAAG 1 cut(s) 616
AfaI GTAC 4 cut(s) 271, 304, 365, 800
AgsI TTSAA 5 cut(s) 467, 901, 1129, 1344, 1400
AjnI CCWGG 2 cut(s) 282, 1615
AluBI AGCT 9 cut(s) 176, 508, 890, 1162, 1207, 1306, 1325, 1489, 1613
AluI AGCT 9 cut(s) 176, 508, 890, 1162, 1207, 1306, 1325, 1489, 1613
Alw21I GWGCWC 2 cut(s) 1049, 1302
Alw26I GTCTC 6 cut(s) 29, 783, 1234, 1401, 1426, 1445
AlwI GGATC 3 cut(s) 286, 593, 1602
Ama87I CYCGRG 1 cut(s) 1301
AoxI GGCC 2 cut(s) 565, 989
ApeKI GCWGC 1 cut(s) 1213
ApoI RAATTY 4 cut(s) 83, 838, 856, 1480
ArsI GACNNNNNNTTYG 2 cut(s) 1465, 1497
Asp700I GAANNNNTTC 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 989
AsuHPI GGTGA 3 cut(s) 272, 287, 1360
AsuNHI GCTAGC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 1301
Bbv12I GWGCWC 2 cut(s) 1049, 1302
BbvI GCAGC 1 cut(s) 1225
BccI CCATC 9 cut(s) 335, 686, 775, 868, 1103, 1114, 1359, 1503, 1547
BcgI CGANNNNNNTGC 4 cut(s) 1205, 1239, 1282, 1316
BciT130I CCWGG 2 cut(s) 284, 1617
BclI TGATCA 3 cut(s) 277, 384, 1072
BcoDI GTCTC 6 cut(s) 29, 783, 1234, 1401, 1426, 1445
BfaI CTAG 3 cut(s) 23, 1173, 1598
BfmI CTRYAG 1 cut(s) 810
BglII AGATCT 1 cut(s) 77
BisI GCNGC 1 cut(s) 1214
BlsI GCNGC 1 cut(s) 1215
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 284, 1617
BmeT110I CYCGRG 1 cut(s) 1301
BmgT120I GGNCC 1 cut(s) 989
BmiI GGNNCC 2 cut(s) 72, 1566
BmrFI CCNGG 2 cut(s) 284, 1617
BmrI ACTGGG 1 cut(s) 1368
BmsI GCATC 2 cut(s) 709, 1435
BmtI GCTAGC 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 1368
BoxI GACNNNNGTC 1 cut(s) 1413
BpmI CTGGAG 1 cut(s) 1551
BpuEI CTTGAG 2 cut(s) 1223, 1250
Bsa29I ATCGAT 1 cut(s) 290
BsaBI GATNNNNATC 2 cut(s) 1005, 1369
BsaJI CCNNGG 1 cut(s) 716
BsaWI WCCGGW 1 cut(s) 916
Bse1I ACTGG 4 cut(s) 277, 947, 1363, 1568
Bse3DI GCAATG 4 cut(s) 67, 541, 1042, 1504
Bse8I GATNNNNATC 2 cut(s) 1005, 1369
BseBI CCWGG 2 cut(s) 284, 1617
BseCI ATCGAT 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 716
BseGI GGATG 5 cut(s) 112, 1125, 1514, 1546, 1558
BseJI GATNNNNATC 2 cut(s) 1005, 1369
BseMI GCAATG 4 cut(s) 67, 541, 1042, 1504
BseMII CTCAG 4 cut(s) 43, 147, 435, 791
BseNI ACTGG 4 cut(s) 277, 947, 1363, 1568
BseXI GCAGC 1 cut(s) 1225
BseYI CCCAGC 1 cut(s) 176
BshFI GGCC 2 cut(s) 567, 991
BshVI ATCGAT 1 cut(s) 290
BsiHKAI GWGCWC 2 cut(s) 1049, 1302
BsiHKCI CYCGRG 1 cut(s) 1301
BsiSI CCGG 1 cut(s) 917
BsmAI GTCTC 6 cut(s) 29, 783, 1234, 1401, 1426, 1445
BsnI GGCC 2 cut(s) 567, 991
BsoBI CYCGRG 1 cut(s) 1301
Bsp1286I GDGCHC 2 cut(s) 1049, 1302
Bsp143I GATC 9 cut(s) 10, 77, 277, 291, 384, 598, 1072, 1530, 1594
BspACI CCGC 1 cut(s) 815
BspANI GGCC 2 cut(s) 567, 991
BspCNI CTCAG 4 cut(s) 42, 146, 436, 790
BspDI ATCGAT 1 cut(s) 290
BspLI GGNNCC 2 cut(s) 72, 1566
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 3 cut(s) 286, 593, 1602
BsrDI GCAATG 4 cut(s) 67, 541, 1042, 1504
BsrI ACTGG 4 cut(s) 277, 947, 1363, 1568
BssECI CCNNGG 1 cut(s) 716
BssMI GATC 9 cut(s) 10, 77, 277, 291, 384, 598, 1072, 1530, 1594
Bst2UI CCWGG 2 cut(s) 284, 1617
Bst4CI ACNGT 2 cut(s) 562, 811
Bst6I CTCTTC 2 cut(s) 1035, 1232
BstC8I GCNNGC 2 cut(s) 24, 993
BstDEI CTNAG 6 cut(s) 29, 133, 444, 644, 777, 1244
BstF5I GGATG 5 cut(s) 112, 1125, 1514, 1546, 1558
BstKTI GATC 9 cut(s) 13, 80, 280, 294, 387, 601, 1075, 1533, 1597
BstMAI GTCTC 6 cut(s) 29, 783, 1234, 1401, 1426, 1445
BstMBI GATC 9 cut(s) 10, 77, 277, 291, 384, 598, 1072, 1530, 1594
BstMWI GCNNNNNNNGC 2 cut(s) 552, 1213
BstNI CCWGG 2 cut(s) 284, 1617
BstNSI RCATGY 1 cut(s) 907
BstPAI GACNNNNGTC 1 cut(s) 1413
BstSCI CCNGG 2 cut(s) 282, 1615
BstSFI CTRYAG 1 cut(s) 810
BstV1I GCAGC 1 cut(s) 1225
BstX2I RGATCY 2 cut(s) 77, 1594
BstYI RGATCY 2 cut(s) 77, 1594
Bsu15I ATCGAT 1 cut(s) 290
BsuRI GGCC 2 cut(s) 567, 991
BsuTUI ATCGAT 1 cut(s) 290
BtsCI GGATG 5 cut(s) 112, 1125, 1514, 1546, 1558
BtsIMutI CAGTG 6 cut(s) 37, 141, 261, 441, 1049, 1575
Cac8I GCNNGC 2 cut(s) 24, 993
Cfr13I GGNCC 1 cut(s) 989
ClaI ATCGAT 1 cut(s) 290
Csp6I GTAC 4 cut(s) 270, 303, 364, 799
CviAII CATG 7 cut(s) 189, 368, 826, 884, 904, 1076, 1436
CviQI GTAC 4 cut(s) 270, 303, 364, 799
DdeI CTNAG 6 cut(s) 29, 133, 444, 644, 777, 1244
DpnI GATC 9 cut(s) 12, 79, 279, 293, 386, 600, 1074, 1532, 1596
DpnII GATC 9 cut(s) 10, 77, 277, 291, 384, 598, 1072, 1530, 1594
DraI TTTAAA 1 cut(s) 1180
Eam1104I CTCTTC 2 cut(s) 1035, 1232
EarI CTCTTC 2 cut(s) 1035, 1232
Eco32I GATATC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 616
Eco88I CYCGRG 1 cut(s) 1301
EcoRI GAATTC 2 cut(s) 83, 856
EcoRII CCWGG 2 cut(s) 282, 1615
EcoRV GATATC 1 cut(s) 45
FaeI CATG 7 cut(s) 192, 371, 829, 887, 907, 1079, 1439
FalI AAGNNNNNCTT 4 cut(s) 637, 669, 1337, 1369
FatI CATG 7 cut(s) 188, 367, 825, 883, 903, 1075, 1435
FbaI TGATCA 3 cut(s) 277, 384, 1072
FblI GTMKAC 1 cut(s) 1417
Fnu4HI GCNGC 1 cut(s) 1214
FokI GGATG 5 cut(s) 119, 1132, 1521, 1553, 1565
Fsp4HI GCNGC 1 cut(s) 1214
FspBI CTAG 3 cut(s) 23, 1173, 1598
GluI GCNGC 1 cut(s) 1214
GsaI CCCAGC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 1551
HaeIII GGCC 2 cut(s) 567, 991
HapII CCGG 1 cut(s) 917
Hin1II CATG 7 cut(s) 192, 371, 829, 887, 907, 1079, 1439
HindIII AAGCTT 1 cut(s) 1160
HinfI GANTC 6 cut(s) 287, 448, 463, 1006, 1315, 1370
HpaII CCGG 1 cut(s) 917
HphI GGTGA 3 cut(s) 272, 287, 1360
Hpy166II GTNNAC 2 cut(s) 1351, 1418
Hpy188I TCNGA 8 cut(s) 49, 82, 635, 689, 780, 1143, 1314, 1588
Hpy188III TCNNGA 5 cut(s) 408, 735, 937, 1273, 1397
Hpy8I GTNNAC 2 cut(s) 1351, 1418
HpyCH4III ACNGT 2 cut(s) 562, 811
HpyCH4IV ACGT 1 cut(s) 1187
HpyCH4V TGCA 9 cut(s) 60, 677, 845, 926, 1079, 1213, 1448, 1463, 1497
HpyF10VI GCNNNNNNNGC 2 cut(s) 552, 1213
HpyF3I CTNAG 6 cut(s) 29, 133, 444, 644, 777, 1244
HpySE526I ACGT 1 cut(s) 1187
Hsp92II CATG 7 cut(s) 192, 371, 829, 887, 907, 1079, 1439
Ksp22I TGATCA 3 cut(s) 277, 384, 1072
Kzo9I GATC 9 cut(s) 10, 77, 277, 291, 384, 598, 1072, 1530, 1594
LmnI GCTCC 5 cut(s) 887, 1253, 1486, 1570, 1618
Lsp1109I GCAGC 1 cut(s) 1225
LweI GCATC 2 cut(s) 709, 1435
MaeI CTAG 3 cut(s) 23, 1173, 1598
MaeII ACGT 1 cut(s) 1187
MaeIII GTNAC 5 cut(s) 400, 556, 805, 1168, 1471
MalI GATC 9 cut(s) 12, 79, 279, 293, 386, 600, 1074, 1532, 1596
MboI GATC 9 cut(s) 10, 77, 277, 291, 384, 598, 1072, 1530, 1594
MboII GAAGA 3 cut(s) 1052, 1249, 1261
MfeI CAATTG 1 cut(s) 1101
MflI RGATCY 2 cut(s) 77, 1594
MhlI GDGCHC 2 cut(s) 1049, 1302
MluCI AATT 9 cut(s) 54, 83, 527, 838, 856, 927, 942, 1101, 1480
MmeI TCCRAC 1 cut(s) 931
MnlI CCTC 7 cut(s) 38, 142, 248, 629, 726, 811, 980
MroXI GAANNNNTTC 1 cut(s) 629
MseI TTAA 7 cut(s) 356, 456, 662, 1164, 1179, 1193, 1503
MslI CAYNNNNRTG 1 cut(s) 830
MspI CCGG 1 cut(s) 917
MspR9I CCNGG 2 cut(s) 284, 1617
MssI GTTTAAAC 1 cut(s) 1180
MunI CAATTG 1 cut(s) 1101
MvaI CCWGG 2 cut(s) 284, 1617
MwoI GCNNNNNNNGC 2 cut(s) 552, 1213
NdeII GATC 9 cut(s) 10, 77, 277, 291, 384, 598, 1072, 1530, 1594
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 7 cut(s) 192, 371, 829, 887, 907, 1079, 1439
NlaIV GGNNCC 2 cut(s) 72, 1566
NmeAIII GCCGAG 1 cut(s) 697
NmuCI GTSAC 2 cut(s) 1168, 1471
NspI RCATGY 1 cut(s) 907
PaeR7I CTCGAG 1 cut(s) 1301
PdmI GAANNNNTTC 1 cut(s) 629
PfeI GAWTC 6 cut(s) 287, 448, 463, 1006, 1315, 1370
PfoI TCCNGGA 1 cut(s) 1615
PkrI GCNGC 1 cut(s) 1215
PmeI GTTTAAAC 1 cut(s) 1180
PshAI GACNNNNGTC 1 cut(s) 1413
Psp6I CCWGG 2 cut(s) 282, 1615
PspFI CCCAGC 1 cut(s) 176
PspGI CCWGG 2 cut(s) 282, 1615
PspN4I GGNNCC 2 cut(s) 72, 1566
PspPI GGNCC 1 cut(s) 989
PspXI VCTCGAGB 1 cut(s) 1301
PsuI RGATCY 2 cut(s) 77, 1594
RsaI GTAC 4 cut(s) 271, 304, 365, 800
RsaNI GTAC 4 cut(s) 270, 303, 364, 799
RseI CAYNNNNRTG 1 cut(s) 830
SaqAI TTAA 7 cut(s) 356, 456, 662, 1164, 1179, 1193, 1503
SatI GCNGC 1 cut(s) 1214
Sau3AI GATC 9 cut(s) 10, 77, 277, 291, 384, 598, 1072, 1530, 1594
Sau96I GGNCC 1 cut(s) 989
ScaI AGTACT 1 cut(s) 271
ScrFI CCNGG 2 cut(s) 284, 1617
SduI GDGCHC 2 cut(s) 1049, 1302
SfaNI GCATC 2 cut(s) 709, 1435
SfcI CTRYAG 1 cut(s) 810
Sfr274I CTCGAG 1 cut(s) 1301
SlaI CTCGAG 1 cut(s) 1301
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 3 cut(s) 1202, 1229, 1301
SmoI CTYRAG 3 cut(s) 1202, 1229, 1301
Sse9I AATT 9 cut(s) 54, 83, 527, 838, 856, 927, 942, 1101, 1480
SsiI CCGC 1 cut(s) 815
SspI AATATT 1 cut(s) 1459
SspMI CTAG 3 cut(s) 23, 1173, 1598
StyD4I CCNGG 2 cut(s) 282, 1615
TaaI ACNGT 2 cut(s) 562, 811
TaiI ACGT 1 cut(s) 1190
TaqI TCGA 7 cut(s) 211, 290, 409, 971, 1302, 1318, 1373
TasI AATT 9 cut(s) 54, 83, 527, 838, 856, 927, 942, 1101, 1480
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 6 cut(s) 287, 448, 463, 1006, 1315, 1370
Tru1I TTAA 7 cut(s) 356, 456, 662, 1164, 1179, 1193, 1503
Tru9I TTAA 7 cut(s) 356, 456, 662, 1164, 1179, 1193, 1503
TscAI CASTG 6 cut(s) 37, 141, 261, 448, 1056, 1575
TseFI GTSAC 2 cut(s) 1168, 1471
TseI GCWGC 1 cut(s) 1213
Tsp45I GTSAC 2 cut(s) 1168, 1471
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 6 cut(s) 37, 141, 261, 448, 1056, 1575
XapI RAATTY 4 cut(s) 83, 838, 856, 1480
XceI RCATGY 1 cut(s) 907
XhoI CTCGAG 1 cut(s) 1301
XmiI GTMKAC 1 cut(s) 1417
XmnI GAANNNNTTC 1 cut(s) 629
XspI CTAG 3 cut(s) 23, 1173, 1598
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.