Rh7AG021200

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001096
Physical Location & Seq
Forward (+)
1418964 .. 1419727
764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG021200.1

Sequence Viewer

Length: 438 bp
ATGAAGTACGATTCAGTGATTTCCAGAAGCATTCATCGGCTTGAGCAGAAGAGACTAAGATATGGAGCATTTCCTTGTTTCTTCCTGATAGCATTATGCTTTCGCATAGTGCTCGAGCTTGGTCTGATTCGACCAGCTTTGAACTTGCAGCTGTCAGTAATCAAAGGTGAACTTGACTGGGAGATGGGAATCGAAGAGGTTAAAGATGTCAGTCTTCAAGTAGGAGACTTTGGTCTACAGGAAAATGAGAGTCATGAACCAGATGCAGAGACAAATAAAGTTGTGACAAAGAATTTGGAGCCGATTTGCAACGTTAAGGGACGGAGAAATGAGTTTTGCGAGATCAACAAGGATGTTCGGGTGGATGGGAAATCGGCTCCAGTGTTTATTGTTTCATCTGAAATGGATCTAGGAAATGGAATAGCTCCTGGACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

145

Amino Acids

16.34

Weight (kDa)

5.26

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 235
AclI AACGTT 1 cut(s) 312
AclWI GGATC 1 cut(s) 414
AcsI RAATTY 1 cut(s) 292
AfaI GTAC 1 cut(s) 8
AgsI TTSAA 2 cut(s) 142, 218
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 4 cut(s) 118, 137, 151, 425
AluI AGCT 4 cut(s) 118, 137, 151, 425
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 3 cut(s) 46, 219, 263
AlwI GGATC 1 cut(s) 414
Ama87I CYCGRG 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 277, 309
AsuHPI GGTGA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 160
BccI CCATC 2 cut(s) 178, 359
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BciT130I CCWGG 1 cut(s) 429
BcoDI GTCTC 3 cut(s) 46, 219, 263
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 236
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 429
BmeT110I CYCGRG 1 cut(s) 113
BmiI GGNNCC 2 cut(s) 300, 378
BmrFI CCNGG 1 cut(s) 429
BmrI ACTGGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 187
BoxI GACNNNNGTC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 182, 380
Bse8I GATNNNNATC 1 cut(s) 188
BseBI CCWGG 1 cut(s) 429
BseGI GGATG 2 cut(s) 358, 370
BseJI GATNNNNATC 1 cut(s) 188
BseNI ACTGG 2 cut(s) 182, 380
BseXI GCAGC 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 333
BsmAI GTCTC 3 cut(s) 46, 219, 263
BsmFI GGGAC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 342, 406
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 300, 378
BspPI GGATC 1 cut(s) 414
BsrI ACTGG 2 cut(s) 182, 380
BssMI GATC 2 cut(s) 342, 406
Bst2UI CCWGG 1 cut(s) 429
Bst6I CTCTTC 2 cut(s) 44, 189
BstDEI CTNAG 1 cut(s) 56
BstF5I GGATG 2 cut(s) 358, 370
BstKTI GATC 2 cut(s) 345, 409
BstMAI GTCTC 3 cut(s) 46, 219, 263
BstMBI GATC 2 cut(s) 342, 406
BstNI CCWGG 1 cut(s) 429
BstPAI GACNNNNGTC 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BtsCI GGATG 2 cut(s) 358, 370
BtsIMutI CAGTG 2 cut(s) 21, 387
CciI TCATGA 1 cut(s) 253
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 254
CviJI RGCY 7 cut(s) 40, 118, 137, 151, 301, 377, 425
CviKI_1 RGCY 7 cut(s) 40, 118, 137, 151, 301, 377, 425
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 56
DpnI GATC 2 cut(s) 344, 408
DpnII GATC 2 cut(s) 342, 406
Eam1104I CTCTTC 2 cut(s) 44, 189
EarI CTCTTC 2 cut(s) 44, 189
Eco88I CYCGRG 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 427
FaeI CATG 1 cut(s) 257
FaiI YATR 4 cut(s) 63, 97, 107, 255
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FaqI GGGAC 1 cut(s) 333
FatI CATG 1 cut(s) 253
FblI GTMKAC 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 2 cut(s) 365, 377
Fsp4HI GCNGC 1 cut(s) 149
FspBI CTAG 1 cut(s) 410
GluI GCNGC 1 cut(s) 149
GsuI CTGGAG 1 cut(s) 363
Hin1II CATG 1 cut(s) 257
HinfI GANTC 4 cut(s) 11, 127, 189, 250
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 2 cut(s) 170, 236
Hpy188I TCNGA 2 cut(s) 126, 400
Hpy188III TCNNGA 3 cut(s) 24, 85, 254
Hpy8I GTNNAC 2 cut(s) 170, 236
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 3 cut(s) 148, 266, 309
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 1 cut(s) 257
Kzo9I GATC 2 cut(s) 342, 406
LmnI GCTCC 4 cut(s) 65, 298, 382, 430
LpnPI CCDG 8 cut(s) 37, 98, 147, 163, 224, 273, 393, 414
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 410
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 283
MalI GATC 2 cut(s) 344, 408
MboI GATC 2 cut(s) 342, 406
MboII GAAGA 4 cut(s) 61, 73, 206, 206
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 1 cut(s) 292
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 1 cut(s) 190
MseI TTAA 2 cut(s) 201, 315
MspA1I CMGCKG 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 429
Mva1269I GAATGC 1 cut(s) 30
MvaI CCWGG 1 cut(s) 429
NdeII GATC 2 cut(s) 342, 406
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 2 cut(s) 300, 378
NmuCI GTSAC 1 cut(s) 283
PaeR7I CTCGAG 1 cut(s) 113
PagI TCATGA 1 cut(s) 253
PctI GAATGC 1 cut(s) 30
PfeI GAWTC 3 cut(s) 11, 127, 189
PfoI TCCNGGA 1 cut(s) 427
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PshAI GACNNNNGTC 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 2 cut(s) 300, 378
PspXI VCTCGAGB 1 cut(s) 113
PsuI RGATCY 1 cut(s) 406
PvuII CAGCTG 1 cut(s) 151
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 2 cut(s) 201, 315
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 2 cut(s) 342, 406
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 114
SetI ASST 7 cut(s) 120, 139, 153, 169, 201, 315, 427
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 236
Sfr274I CTCGAG 1 cut(s) 113
SlaI CTCGAG 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 41, 113
SmoI CTYRAG 2 cut(s) 41, 113
Sse9I AATT 1 cut(s) 292
SspMI CTAG 1 cut(s) 410
StyD4I CCNGG 1 cut(s) 427
TaiI ACGT 1 cut(s) 315
TaqI TCGA 3 cut(s) 114, 130, 192
TasI AATT 1 cut(s) 292
TfiI GAWTC 3 cut(s) 11, 127, 189
Tru1I TTAA 2 cut(s) 201, 315
Tru9I TTAA 2 cut(s) 201, 315
TscAI CASTG 2 cut(s) 21, 387
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 4 cut(s) 17, 23, 270, 384
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 2 cut(s) 21, 387
XapI RAATTY 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 235
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.