RchiOBHm_Chr7g0179201

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001096
Physical Location & Seq
Forward (+)
1571379 .. 1571702
324 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15972

Sequence Viewer

Length: 324 bp
ATGGCTAGAAGCTTGGGATATGAGGTAACTGTTGCAGAGGCTGACAAAAACATGTCAAAAATCGCAGAAGTTGTGAATTCTAGTGATGTGTTAATGGGACTCCATGGAGCTGGCCTTGCAAACATTCTTTTCCATCCTGAAAATGCAATTTTTATTCAAATACTTCCTGTAGGAGGATTCGAATGGACTGCAGCAAACTACTTCCGAGAGCCTTCAAGAGATATGAATCTGAAGTATTTGGAATACAAGATAAGCAAGGAGAGCATATTGGAAAGTGAACCCCAATTGAATAAAAAAAAAAAAGGGGATGGGAAGAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

107

Amino Acids

11.96

Weight (kDa)

6.73

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 3 cut(s) 158, 216, 289
AluBI AGCT 2 cut(s) 12, 110
AluI AGCT 2 cut(s) 12, 110
AlwNI CAGNNNCTG 1 cut(s) 41
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 180
BbvI GCAGC 1 cut(s) 203
BccI CCATC 2 cut(s) 141, 302
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BfaI CTAG 2 cut(s) 6, 81
BfmI CTRYAG 2 cut(s) 168, 189
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bpu14I TTCGAA 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 2 cut(s) 133, 313
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 203
BshFI GGCC 1 cut(s) 114
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 111
BsnI GGCC 1 cut(s) 114
Bsp119I TTCGAA 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 103
BspANI GGCC 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 193
BspT104I TTCGAA 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 308
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 103
BstENI CCTNNNNNAGG 1 cut(s) 171
BstF5I GGATG 2 cut(s) 133, 313
BstMWI GCNNNNNNNGC 2 cut(s) 116, 261
BstNSI RCATGY 1 cut(s) 55
BstSFI CTRYAG 2 cut(s) 168, 189
BstV1I GCAGC 1 cut(s) 203
BstXI CCANNNNNNTGG 1 cut(s) 110
BsuRI GGCC 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 2 cut(s) 133, 313
Cac8I GCNNGC 1 cut(s) 112
CaiI CAGNNNCTG 1 cut(s) 41
CviAII CATG 2 cut(s) 52, 104
CviJI RGCY 6 cut(s) 5, 12, 41, 110, 114, 211
CviKI_1 RGCY 6 cut(s) 5, 12, 41, 110, 114, 211
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 2 cut(s) 55, 107
FaiI YATR 5 cut(s) 21, 53, 105, 224, 266
FaqI GGGAC 1 cut(s) 111
FatI CATG 2 cut(s) 51, 103
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 2 cut(s) 120, 320
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 2 cut(s) 6, 81
GluI GCNGC 1 cut(s) 192
HaeIII GGCC 1 cut(s) 114
Hin1II CATG 2 cut(s) 55, 107
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 3 cut(s) 99, 177, 226
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 2 cut(s) 206, 231
Hpy188III TCNNGA 2 cut(s) 137, 216
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 222
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 4 cut(s) 35, 119, 146, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 261
Hsp92II CATG 2 cut(s) 55, 107
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 3 cut(s) 96, 150, 180
Lsp1109I GCAGC 1 cut(s) 203
MaeI CTAG 2 cut(s) 6, 81
MaeIII GTNAC 1 cut(s) 25
MfeI CAATTG 1 cut(s) 284
MluCI AATT 3 cut(s) 76, 147, 284
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 3 cut(s) 16, 31, 167
MseI TTAA 1 cut(s) 92
MunI CAATTG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 116, 261
NcoI CCATGG 1 cut(s) 103
NlaIII CATG 2 cut(s) 55, 107
NspI RCATGY 1 cut(s) 55
NspV TTCGAA 1 cut(s) 180
PciI ACATGT 1 cut(s) 51
PfeI GAWTC 2 cut(s) 177, 226
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PscI ACATGT 1 cut(s) 51
PstI CTGCAG 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 41
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 192
SchI GAGTC 1 cut(s) 93
SetI ASST 3 cut(s) 14, 27, 112
SfcI CTRYAG 2 cut(s) 168, 189
SfuI TTCGAA 1 cut(s) 180
Sse9I AATT 3 cut(s) 76, 147, 284
SspMI CTAG 2 cut(s) 6, 81
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 180
TasI AATT 3 cut(s) 76, 147, 284
TfiI GAWTC 2 cut(s) 177, 226
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 239
XagI CCTNNNNNAGG 1 cut(s) 171
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 55
XspI CTAG 2 cut(s) 6, 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.