Rh7AG021100

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001096
Physical Location & Seq
Forward (+)
1417510 .. 1418730
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG021100.1

Sequence Viewer

Length: 1221 bp
ATGGGTGTTGATCTCAAAATGCTAGCCCTCAGTGAGACAAAGATAGCAGAACCAATTTGCAATGTTATGGAACCAAGATCTGAATTCTGCGAGATTGAGAATAGGGATGTTCGGGTCAATGGAAAAGTGTCCTCAGTGTATGTGGTTTCATCTCAAAGGGAGAATGTGATAGAAGCTGAGAATAACTCATGGAATATAAGACCTTATGCTCGAAAAGACGATGTAAAAGCAATAAGCCTCATTAGGAAATGGTCAGTGAAACAAGTAAGTACTGGTGATCACCAGGAATCAATCCCTAAATGTACCAGAAATCATAGTGTTCCAGCCATCTTGTTTTCACTTGGTGGATATACATTAAATCAGTACCATGACTTTGCTGGTGTGATCATTCCACTCTATGTTACTTCTCGAAAATACAATGGAGAAGTTCAGTTCCTTATCACTGAGAATCGTATTAAGTGGATTCAAAAGTTCCAAGAAATACTAAAAGGACTTTCCAAGTATGAGCTTATTGACATTGACAAAGAATTAGAACAAGTCCATTGCTTTCCAAGCGTAACGGTTGGCCTGAAAACATCTCGCAAGGAAATGACATTTGATCCTTTGAGATATTCATATTCTATGAAAGACTTCAGAGGGTTTCTAAGAAGCACTTATTCATTAAAGAGAGCCAATGCAATCAAAATCAGAGATGGACAGCATCAACTAAAAAAGCCTCGGCTTCTCATCATATCAAGAAACAGAACAAGGTCTTTCACAAATTCGGGCGAAATAACTCAGATGGCAAGAGACTTGGGGTACAAGGTAACTGTGGCGGAGGCTGACATGAATGTGTCAAATTTTGCAAATGTTGTGAATTCTTGTGATGTGATGATGGGAGTTCATGGAGCTGGTCTTTTGAACATACTTTTCCTACCGGAAAATGCAATTTTTATCCAGATAATTCCAGTTGGAAAGTTCCAATGGATTTCGACAACATACTATGGAGGGCCAGCAAAGGATATGAATCTAAAGTATTTGGAATATAAGATAAGCAATGAAGAGAGCACACTGATACAGCAATACCCACTTGATCATGCAGTTTTTACTGACCCTATCTCAATTGGAAAACAAGGGTGGATGGTATTCAAGTCAATCTATCTGAACAAACAAAATGTAAAGCTTAATGTCACTAGGTTTAAACCCACGTTGTTAAAAGCCCTTGAGCTTTTGCAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

406

Amino Acids

46.56

Weight (kDa)

9.33

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 228 - 311 3.9e-11 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 815
AclWI GGATC 1 cut(s) 593
AcsI RAATTY 4 cut(s) 83, 760, 838, 856
AcuI CTGAAG 1 cut(s) 616
AdeI CACNNNGTG 1 cut(s) 344
AfaI GTAC 4 cut(s) 271, 304, 365, 800
AgsI TTSAA 3 cut(s) 467, 901, 1129
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 5 cut(s) 176, 508, 890, 1162, 1207
AluI AGCT 5 cut(s) 176, 508, 890, 1162, 1207
Alw21I GWGCWC 1 cut(s) 1049
Alw26I GTCTC 2 cut(s) 29, 783
AlwI GGATC 1 cut(s) 593
AoxI GGCC 2 cut(s) 565, 989
ApeKI GCWGC 1 cut(s) 1213
ApoI RAATTY 4 cut(s) 83, 760, 838, 856
Asp700I GAANNNNTTC 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 989
AsuHPI GGTGA 2 cut(s) 272, 287
AsuNHI GCTAGC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 1049
BccI CCATC 5 cut(s) 335, 686, 775, 868, 1114
BciT130I CCWGG 1 cut(s) 284
BclI TGATCA 3 cut(s) 277, 384, 1072
BcoDI GTCTC 2 cut(s) 29, 783
BfaI CTAG 2 cut(s) 23, 1173
BglII AGATCT 1 cut(s) 77
BisI GCNGC 1 cut(s) 1214
BlsI GCNGC 1 cut(s) 1215
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 989
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 1 cut(s) 709
BmtI GCTAGC 1 cut(s) 26
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BsaBI GATNNNNATC 1 cut(s) 1005
BsaJI CCNNGG 1 cut(s) 716
BsaWI WCCGGW 1 cut(s) 916
Bse1I ACTGG 2 cut(s) 277, 947
Bse3DI GCAATG 3 cut(s) 67, 541, 1042
Bse8I GATNNNNATC 1 cut(s) 1005
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 716
BseGI GGATG 2 cut(s) 112, 1125
BseJI GATNNNNATC 1 cut(s) 1005
BseMI GCAATG 3 cut(s) 67, 541, 1042
BseMII CTCAG 5 cut(s) 43, 147, 168, 435, 791
BseNI ACTGG 2 cut(s) 277, 947
BshFI GGCC 2 cut(s) 567, 991
BsiHKAI GWGCWC 1 cut(s) 1049
BsiSI CCGG 1 cut(s) 917
BsmAI GTCTC 2 cut(s) 29, 783
BsnI GGCC 2 cut(s) 567, 991
Bsp1286I GDGCHC 1 cut(s) 1049
Bsp143I GATC 6 cut(s) 10, 77, 277, 384, 598, 1072
BspACI CCGC 1 cut(s) 815
BspANI GGCC 2 cut(s) 567, 991
BspCNI CTCAG 5 cut(s) 42, 146, 169, 436, 790
BspLI GGNNCC 1 cut(s) 72
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 593
BsrDI GCAATG 3 cut(s) 67, 541, 1042
BsrI ACTGG 2 cut(s) 277, 947
BssECI CCNNGG 1 cut(s) 716
BssMI GATC 6 cut(s) 10, 77, 277, 384, 598, 1072
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 562, 811
Bst6I CTCTTC 1 cut(s) 1035
BstC8I GCNNGC 2 cut(s) 24, 993
BstDEI CTNAG 6 cut(s) 29, 133, 177, 444, 644, 777
BstF5I GGATG 2 cut(s) 112, 1125
BstKTI GATC 6 cut(s) 13, 80, 280, 387, 601, 1075
BstMAI GTCTC 2 cut(s) 29, 783
BstMBI GATC 6 cut(s) 10, 77, 277, 384, 598, 1072
BstMWI GCNNNNNNNGC 2 cut(s) 552, 1213
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BsuRI GGCC 2 cut(s) 567, 991
BtsCI GGATG 2 cut(s) 112, 1125
BtsIMutI CAGTG 5 cut(s) 37, 141, 261, 441, 1049
Cac8I GCNNGC 2 cut(s) 24, 993
Cfr13I GGNCC 1 cut(s) 989
Csp6I GTAC 4 cut(s) 270, 303, 364, 799
CviAII CATG 5 cut(s) 189, 368, 826, 884, 1076
CviQI GTAC 4 cut(s) 270, 303, 364, 799
DdeI CTNAG 6 cut(s) 29, 133, 177, 444, 644, 777
DpnI GATC 6 cut(s) 12, 79, 279, 386, 600, 1074
DpnII GATC 6 cut(s) 10, 77, 277, 384, 598, 1072
DraI TTTAAA 1 cut(s) 1180
DraIII CACNNNGTG 1 cut(s) 344
Eam1104I CTCTTC 1 cut(s) 1035
EarI CTCTTC 1 cut(s) 1035
EciI GGCGGA 1 cut(s) 830
Eco57I CTGAAG 1 cut(s) 616
EcoRI GAATTC 2 cut(s) 83, 856
EcoRII CCWGG 1 cut(s) 282
FaeI CATG 5 cut(s) 192, 371, 829, 887, 1079
FalI AAGNNNNNCTT 2 cut(s) 637, 669
FatI CATG 5 cut(s) 188, 367, 825, 883, 1075
FbaI TGATCA 3 cut(s) 277, 384, 1072
Fnu4HI GCNGC 1 cut(s) 1214
FokI GGATG 2 cut(s) 119, 1132
Fsp4HI GCNGC 1 cut(s) 1214
FspBI CTAG 2 cut(s) 23, 1173
GluI GCNGC 1 cut(s) 1214
HaeIII GGCC 2 cut(s) 567, 991
HapII CCGG 1 cut(s) 917
Hin1II CATG 5 cut(s) 192, 371, 829, 887, 1079
HindIII AAGCTT 1 cut(s) 1160
HinfI GANTC 4 cut(s) 287, 448, 463, 1006
HpaII CCGG 1 cut(s) 917
HphI GGTGA 2 cut(s) 272, 287
Hpy188I TCNGA 5 cut(s) 82, 635, 689, 780, 1143
Hpy188III TCNNGA 3 cut(s) 408, 735, 937
HpyCH4III ACNGT 2 cut(s) 562, 811
HpyCH4IV ACGT 1 cut(s) 1187
HpyCH4V TGCA 6 cut(s) 60, 677, 845, 926, 1079, 1213
HpyF10VI GCNNNNNNNGC 2 cut(s) 552, 1213
HpyF3I CTNAG 6 cut(s) 29, 133, 177, 444, 644, 777
HpySE526I ACGT 1 cut(s) 1187
Hsp92II CATG 5 cut(s) 192, 371, 829, 887, 1079
Ksp22I TGATCA 3 cut(s) 277, 384, 1072
Kzo9I GATC 6 cut(s) 10, 77, 277, 384, 598, 1072
LmnI GCTCC 1 cut(s) 887
LweI GCATC 1 cut(s) 709
MaeI CTAG 2 cut(s) 23, 1173
MaeII ACGT 1 cut(s) 1187
MaeIII GTNAC 4 cut(s) 400, 556, 805, 1168
MalI GATC 6 cut(s) 12, 79, 279, 386, 600, 1074
MboI GATC 6 cut(s) 10, 77, 277, 384, 598, 1072
MboII GAAGA 1 cut(s) 1052
MfeI CAATTG 1 cut(s) 1101
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 1049
MluCI AATT 9 cut(s) 54, 83, 527, 760, 838, 856, 927, 942, 1101
MmeI TCCRAC 1 cut(s) 931
MnlI CCTC 7 cut(s) 38, 142, 248, 629, 726, 811, 980
MroXI GAANNNNTTC 1 cut(s) 629
MseI TTAA 6 cut(s) 356, 456, 662, 1164, 1179, 1193
MslI CAYNNNNRTG 1 cut(s) 830
MspI CCGG 1 cut(s) 917
MspR9I CCNGG 1 cut(s) 284
MssI GTTTAAAC 1 cut(s) 1180
MunI CAATTG 1 cut(s) 1101
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 552, 1213
NdeII GATC 6 cut(s) 10, 77, 277, 384, 598, 1072
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 5 cut(s) 192, 371, 829, 887, 1079
NlaIV GGNNCC 1 cut(s) 72
NmeAIII GCCGAG 1 cut(s) 697
NmuCI GTSAC 1 cut(s) 1168
PdmI GAANNNNTTC 1 cut(s) 629
PfeI GAWTC 4 cut(s) 287, 448, 463, 1006
PkrI GCNGC 1 cut(s) 1215
PmeI GTTTAAAC 1 cut(s) 1180
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 989
PsuI RGATCY 1 cut(s) 77
RsaI GTAC 4 cut(s) 271, 304, 365, 800
RsaNI GTAC 4 cut(s) 270, 303, 364, 799
RseI CAYNNNNRTG 1 cut(s) 830
SaqAI TTAA 6 cut(s) 356, 456, 662, 1164, 1179, 1193
SatI GCNGC 1 cut(s) 1214
Sau3AI GATC 6 cut(s) 10, 77, 277, 384, 598, 1072
Sau96I GGNCC 1 cut(s) 989
ScaI AGTACT 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 1 cut(s) 1049
SfaNI GCATC 1 cut(s) 709
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 1 cut(s) 1202
SmoI CTYRAG 1 cut(s) 1202
Sse9I AATT 9 cut(s) 54, 83, 527, 760, 838, 856, 927, 942, 1101
SsiI CCGC 1 cut(s) 815
SspMI CTAG 2 cut(s) 23, 1173
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 562, 811
TaiI ACGT 1 cut(s) 1190
TaqI TCGA 3 cut(s) 211, 409, 971
TasI AATT 9 cut(s) 54, 83, 527, 760, 838, 856, 927, 942, 1101
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 4 cut(s) 287, 448, 463, 1006
Tru1I TTAA 6 cut(s) 356, 456, 662, 1164, 1179, 1193
Tru9I TTAA 6 cut(s) 356, 456, 662, 1164, 1179, 1193
TscAI CASTG 5 cut(s) 37, 141, 261, 448, 1056
TseFI GTSAC 1 cut(s) 1168
TseI GCWGC 1 cut(s) 1213
Tsp45I GTSAC 1 cut(s) 1168
TspDTI ATGAA 8 cut(s) 138, 603, 638, 648, 842, 872, 1019, 1053
TspRI CASTG 5 cut(s) 37, 141, 261, 448, 1056
XapI RAATTY 4 cut(s) 83, 760, 838, 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 629
XspI CTAG 2 cut(s) 23, 1173
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.