Rh7DG022000

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001096
Physical Location & Seq
Forward (+)
1747729 .. 1747950
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG022000.1

Sequence Viewer

Length: 222 bp
ATGGCTAGAAGCTTGGGATATGAGGTAACTGTTGCAGAGGCTGACAAAAACATGTCAAAAATCGCAGAAGTTGTGAATTCTAGTGATGTGTTAATGGGAGTCCATGGAGCTGGCCTTGCAAACATTCTTTTCCATCCTGAAAATGCAATTTTTATTCAAATACTTCCTGTAGGAGGATTCGAATGGACTGCAGCAAACTACTTCCGAGAGCCTTCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

73

Amino Acids

7.95

Weight (kDa)

5.11

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 7 - 51 5.5e-06 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 2 cut(s) 158, 216
AluBI AGCT 2 cut(s) 12, 110
AluI AGCT 2 cut(s) 12, 110
AlwNI CAGNNNCTG 1 cut(s) 41
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 180
BbvI GCAGC 1 cut(s) 203
BccI CCATC 1 cut(s) 141
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BfaI CTAG 2 cut(s) 6, 81
BfmI CTRYAG 2 cut(s) 168, 189
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bpu14I TTCGAA 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 203
BshFI GGCC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 173
BsnI GGCC 1 cut(s) 114
Bsp119I TTCGAA 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 103
BspANI GGCC 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 193
BspT104I TTCGAA 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 31
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 103
BstENI CCTNNNNNAGG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 55
BstSFI CTRYAG 2 cut(s) 168, 189
BstV1I GCAGC 1 cut(s) 203
BstXI CCANNNNNNTGG 1 cut(s) 110
BsuRI GGCC 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 112
CaiI CAGNNNCTG 1 cut(s) 41
CviAII CATG 2 cut(s) 52, 104
CviJI RGCY 6 cut(s) 5, 12, 41, 110, 114, 211
CviKI_1 RGCY 6 cut(s) 5, 12, 41, 110, 114, 211
Eco130I CCWWGG 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 2 cut(s) 55, 107
FaiI YATR 3 cut(s) 21, 53, 105
FatI CATG 2 cut(s) 51, 103
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 2 cut(s) 6, 81
GluI GCNGC 1 cut(s) 192
HaeIII GGCC 1 cut(s) 114
Hin1II CATG 2 cut(s) 55, 107
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 2 cut(s) 99, 177
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 2 cut(s) 137, 216
HpyAV CCTTC 1 cut(s) 222
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 4 cut(s) 35, 119, 146, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Hsp92II CATG 2 cut(s) 55, 107
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 3 cut(s) 96, 150, 180
Lsp1109I GCAGC 1 cut(s) 203
MaeI CTAG 2 cut(s) 6, 81
MaeIII GTNAC 1 cut(s) 25
MluCI AATT 2 cut(s) 76, 147
MlyI GAGTC 1 cut(s) 108
MnlI CCTC 3 cut(s) 16, 31, 167
MseI TTAA 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 116
NcoI CCATGG 1 cut(s) 103
NlaIII CATG 2 cut(s) 55, 107
NspI RCATGY 1 cut(s) 55
NspV TTCGAA 1 cut(s) 180
PciI ACATGT 1 cut(s) 51
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PscI ACATGT 1 cut(s) 51
PstI CTGCAG 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 41
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 192
SchI GAGTC 1 cut(s) 108
SetI ASST 3 cut(s) 14, 27, 112
SfcI CTRYAG 2 cut(s) 168, 189
SfuI TTCGAA 1 cut(s) 180
Sse9I AATT 2 cut(s) 76, 147
SspMI CTAG 2 cut(s) 6, 81
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 180
TasI AATT 2 cut(s) 76, 147
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseI GCWGC 1 cut(s) 191
XagI CCTNNNNNAGG 1 cut(s) 171
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 55
XspI CTAG 2 cut(s) 6, 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.