Rh7BG021100

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001096
Physical Location & Seq
Forward (+)
1530278 .. 1531327
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG021100.1

Sequence Viewer

Length: 1050 bp
ATGGACATGTTAGCAGATGGCAATACCTCCTGGACTATAAGGCCTTATGCTCGAAAAGAAGATGCAACAGCAATGAGTCACGCTCGGAAGTGGTTAGTGAAACCACTGAGTACTGATCACCAGGAAATCCCTCAATGTACTCAGAATCATAGTGTTCCTGCCCTTTTGTTTTCGACTGGAGGATTCACTGGAAACCATTTCCATGACTTCACTGATGTGGTGATTCCACTCTTTATTACCTCTGGACTATATAAGGGTGAAGTTCAATTTCTAATCACGGATACAAGACTATGGTGGATTAAAAAGTTCCAAGAAGTACTAAAAAGATTGTCCAACTATCAGTTCATTGACATTGACAAAGAACAAGTAGTCCATTGCTTTCCAAGCATAACTGTTGGCCTCATAAGACATGAAAGGGAGCTGACCTTTAATGATCGTTCAAAGTATTCTCTTTCCATGAAAGACTTCAGAAAGTTTCTGAGGACAACTTATTCTTTGAAGAAAGCTAATGCAATTAGAGTCAGGGATGGTCAGCACCAAAAGCTGTGGCTTCTCATCATACCAAGGAAGAGAACAAGGTCTTTCACAAATACAGGAGAGATTGGGAGAATGGCAAGAAGCTTGGGGTACAAGGTAAGTGTGGCAGAGGCTGACATGAACGTCACGAAATTTGCACAGCTTGTGAAATCTTGTGATGTGTTGATGGGAGTTCATGGAGCTGGCCTCACCAACATTCTGTTCCTTCCTGATAATGCAATCTTGATCCAAATACTTCTAATTGGAGGGTATGAATGGACTGCAAAGACAGCTTTTGGAAACCCTTCACAGGATATGAATCTCAGGTACATGGAGTATAAGATAAGCAATGAGGAGAGCACACTCATACAACAATACCCACTTAACCATGCAGTTTTTACTGACCCTCACTCTATTGCGAAACAGGGGTGGAAAGCATTCAAGTCAATCCTTATGGATAAGCAAAATGTAAAGCTTAATGTCAATAGGTTTAAACCCGCTTTGTTGAAAGCCCTTGAGCTTCTGCATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

349

Amino Acids

40.17

Weight (kDa)

9.6

Isoelectric Point (pI)

28.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 148 - 254 2.4e-09 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 659
AciI CCGC 1 cut(s) 1014
AclWI GGATC 1 cut(s) 757
AcsI RAATTY 1 cut(s) 668
AcuI CTGAAG 1 cut(s) 451
AfaI GTAC 5 cut(s) 112, 139, 318, 629, 845
AfiI CCNNNNNNNGG 1 cut(s) 826
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 5 cut(s) 266, 441, 499, 958, 1024
AjnI CCWGG 2 cut(s) 29, 120
AjuI GAANNNNNNNTTGG 4 cut(s) 326, 358, 722, 754
AleI CACNNNNGTG 1 cut(s) 215
AloI GAACNNNNNNTCC 2 cut(s) 354, 386
AluBI AGCT 9 cut(s) 421, 506, 544, 621, 679, 719, 809, 991, 1036
AluI AGCT 9 cut(s) 421, 506, 544, 621, 679, 719, 809, 991, 1036
Alw21I GWGCWC 1 cut(s) 878
AlwI GGATC 1 cut(s) 757
AlwNI CAGNNNCTG 1 cut(s) 650
AoxI GGCC 3 cut(s) 41, 397, 721
ApoI RAATTY 1 cut(s) 668
Asp700I GAANNNNTTC 3 cut(s) 464, 820, 953
AsuHPI GGTGA 4 cut(s) 110, 232, 269, 718
Bbv12I GWGCWC 1 cut(s) 878
BccI CCATC 3 cut(s) 11, 521, 697
BciT130I CCWGG 2 cut(s) 31, 122
BciVI GTATCC 1 cut(s) 274
BclI TGATCA 1 cut(s) 115
BfuI GTATCC 1 cut(s) 274
BmcAI AGTACT 2 cut(s) 112, 318
Bme1390I CCNGG 2 cut(s) 31, 122
BmrFI CCNGG 2 cut(s) 31, 122
BmsI GCATC 1 cut(s) 52
BplI GAGNNNNNCTC 4 cut(s) 67, 99, 708, 740
BpmI CTGGAG 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 834
BsaJI CCNNGG 1 cut(s) 563
Bsc4I CCNNNNNNNGG 1 cut(s) 826
Bse1I ACTGG 2 cut(s) 181, 193
Bse3DI GCAATG 3 cut(s) 78, 373, 871
Bse8I GATNNNNATC 1 cut(s) 834
BseBI CCWGG 2 cut(s) 31, 122
BseDI CCNNGG 1 cut(s) 563
BseGI GGATG 1 cut(s) 532
BseJI GATNNNNATC 1 cut(s) 834
BseLI CCNNNNNNNGG 1 cut(s) 826
BseMI GCAATG 3 cut(s) 78, 373, 871
BseMII CTCAG 4 cut(s) 98, 155, 470, 853
BseNI ACTGG 2 cut(s) 181, 193
BseRI GAGGAG 1 cut(s) 884
BshFI GGCC 3 cut(s) 43, 399, 723
BsiHKAI GWGCWC 1 cut(s) 878
BslI CCNNNNNNNGG 1 cut(s) 826
BsmI GAATGC 1 cut(s) 953
BsnI GGCC 3 cut(s) 43, 399, 723
Bsp1286I GDGCHC 1 cut(s) 878
Bsp143I GATC 3 cut(s) 115, 433, 762
BspACI CCGC 1 cut(s) 1014
BspANI GGCC 3 cut(s) 43, 399, 723
BspCNI CTCAG 4 cut(s) 99, 154, 471, 852
BspPI GGATC 1 cut(s) 757
BsrDI GCAATG 3 cut(s) 78, 373, 871
BsrI ACTGG 2 cut(s) 181, 193
BssECI CCNNGG 1 cut(s) 563
BssMI GATC 3 cut(s) 115, 433, 762
BssT1I CCWWGG 1 cut(s) 563
Bst2UI CCWGG 2 cut(s) 31, 122
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 721
BstDEI CTNAG 4 cut(s) 107, 141, 479, 839
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 3 cut(s) 118, 436, 765
BstMBI GATC 3 cut(s) 115, 433, 762
BstMWI GCNNNNNNNGC 3 cut(s) 384, 541, 806
BstNI CCWGG 2 cut(s) 31, 122
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 2 cut(s) 29, 120
BsuI GTATCC 1 cut(s) 274
BsuRI GGCC 3 cut(s) 43, 399, 723
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 3 cut(s) 104, 186, 210
Cac8I GCNNGC 1 cut(s) 721
CaiI CAGNNNCTG 1 cut(s) 650
Csp6I GTAC 5 cut(s) 111, 138, 317, 628, 844
CspCI CAANNNNNGTGG 2 cut(s) 527, 562
CviAII CATG 8 cut(s) 7, 203, 410, 457, 655, 713, 847, 905
CviQI GTAC 5 cut(s) 111, 138, 317, 628, 844
DdeI CTNAG 4 cut(s) 107, 141, 479, 839
DpnI GATC 3 cut(s) 117, 435, 764
DpnII GATC 3 cut(s) 115, 433, 762
DraI TTTAAA 1 cut(s) 1009
DrdI GACNNNNNNGTC 1 cut(s) 659
DseDI GACNNNNNNGTC 1 cut(s) 659
Eam1104I CTCTTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 563
Eco130I CCWWGG 1 cut(s) 563
Eco147I AGGCCT 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 451
EcoRII CCWGG 2 cut(s) 29, 120
EcoT14I CCWWGG 1 cut(s) 563
ErhI CCWWGG 1 cut(s) 563
FaeI CATG 8 cut(s) 10, 206, 413, 460, 658, 716, 850, 908
FatI CATG 8 cut(s) 6, 202, 409, 456, 654, 712, 846, 904
FauI CCCGC 1 cut(s) 1021
FbaI TGATCA 1 cut(s) 115
FokI GGATG 1 cut(s) 539
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 3 cut(s) 43, 399, 723
Hin1II CATG 8 cut(s) 10, 206, 413, 460, 658, 716, 850, 908
HindIII AAGCTT 2 cut(s) 619, 989
HinfI GANTC 6 cut(s) 76, 145, 183, 223, 519, 835
HphI GGTGA 4 cut(s) 110, 232, 269, 718
Hpy188I TCNGA 4 cut(s) 87, 144, 470, 480
Hpy188III TCNNGA 4 cut(s) 243, 664, 746, 760
HpyAV CCTTC 2 cut(s) 752, 831
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 1 cut(s) 660
HpyCH4V TGCA 7 cut(s) 65, 512, 674, 755, 800, 908, 1042
HpyF10VI GCNNNNNNNGC 3 cut(s) 384, 541, 806
HpyF3I CTNAG 4 cut(s) 107, 141, 479, 839
HpySE526I ACGT 1 cut(s) 660
Hsp92II CATG 8 cut(s) 10, 206, 413, 460, 658, 716, 850, 908
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 115, 433, 762
LmnI GCTCC 2 cut(s) 418, 716
LweI GCATC 1 cut(s) 52
MaeII ACGT 1 cut(s) 660
MaeIII GTNAC 2 cut(s) 77, 661
MalI GATC 3 cut(s) 117, 435, 764
MboI GATC 3 cut(s) 115, 433, 762
MboII GAAGA 3 cut(s) 71, 511, 580
MhlI GDGCHC 1 cut(s) 878
MluCI AATT 4 cut(s) 266, 513, 668, 777
MlyI GAGTC 2 cut(s) 85, 528
MmeI TCCRAC 1 cut(s) 357
MroXI GAANNNNTTC 3 cut(s) 464, 820, 953
MseI TTAA 5 cut(s) 300, 429, 900, 993, 1008
MslI CAYNNNNRTG 2 cut(s) 201, 215
MspR9I CCNGG 2 cut(s) 31, 122
MssI GTTTAAAC 1 cut(s) 1009
Mva1269I GAATGC 1 cut(s) 953
MvaI CCWGG 2 cut(s) 31, 122
MwoI GCNNNNNNNGC 3 cut(s) 384, 541, 806
NdeII GATC 3 cut(s) 115, 433, 762
NlaIII CATG 8 cut(s) 10, 206, 413, 460, 658, 716, 850, 908
NmuCI GTSAC 2 cut(s) 77, 661
NspI RCATGY 1 cut(s) 10
OliI CACNNNNGTG 1 cut(s) 215
PceI AGGCCT 1 cut(s) 43
PciI ACATGT 1 cut(s) 6
PctI GAATGC 1 cut(s) 953
PdmI GAANNNNTTC 3 cut(s) 464, 820, 953
PfeI GAWTC 4 cut(s) 145, 183, 223, 835
PfoI TCCNGGA 1 cut(s) 29
PleI GAGTC 2 cut(s) 84, 527
PmeI GTTTAAAC 1 cut(s) 1009
PpsI GAGTC 2 cut(s) 84, 527
PscI ACATGT 1 cut(s) 6
Psp6I CCWGG 2 cut(s) 29, 120
PspGI CCWGG 2 cut(s) 29, 120
PstNI CAGNNNCTG 1 cut(s) 650
RsaI GTAC 5 cut(s) 112, 139, 318, 629, 845
RsaNI GTAC 5 cut(s) 111, 138, 317, 628, 844
RseI CAYNNNNRTG 2 cut(s) 201, 215
SaqAI TTAA 5 cut(s) 300, 429, 900, 993, 1008
Sau3AI GATC 3 cut(s) 115, 433, 762
ScaI AGTACT 2 cut(s) 112, 318
SchI GAGTC 2 cut(s) 85, 528
ScrFI CCNGG 2 cut(s) 31, 122
SduI GDGCHC 1 cut(s) 878
SfaNI GCATC 1 cut(s) 52
SmiMI CAYNNNNRTG 2 cut(s) 201, 215
SmlI CTYRAG 1 cut(s) 1031
SmoI CTYRAG 1 cut(s) 1031
Sse9I AATT 4 cut(s) 266, 513, 668, 777
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 1 cut(s) 1014
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 29, 120
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 1 cut(s) 663
TaqI TCGA 2 cut(s) 52, 173
TasI AATT 4 cut(s) 266, 513, 668, 777
TatI WGTACW 3 cut(s) 110, 137, 316
TfiI GAWTC 4 cut(s) 145, 183, 223, 835
Tru1I TTAA 5 cut(s) 300, 429, 900, 993, 1008
Tru9I TTAA 5 cut(s) 300, 429, 900, 993, 1008
TscAI CASTG 3 cut(s) 111, 193, 217
TseFI GTSAC 2 cut(s) 77, 661
Tsp45I GTSAC 2 cut(s) 77, 661
TspDTI ATGAA 7 cut(s) 334, 426, 473, 671, 701, 804, 848
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 3 cut(s) 111, 193, 217
XapI RAATTY 1 cut(s) 668
XceI RCATGY 1 cut(s) 10
XmnI GAANNNNTTC 3 cut(s) 464, 820, 953
ZrmI AGTACT 2 cut(s) 112, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.