Rh7AG020800

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001096
Physical Location & Seq
Forward (+)
1411727 .. 1413512
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG020800.1

Sequence Viewer

Length: 1569 bp
ATGATGTACGATTCGATACTTGCCAGAAGCTTTAGTCGGCATGAGCAGAAGAAATTAGGATATGGAGCATTTCTTTGCTGCTTGTTGATAGCATTGTGCTTTTGCACAGTGCTGAAGCCCAGTTTGAATCCTCTACCACCTTTGAATTTGCAGCGATCACTTGGTGTCAGAAACAAGATACTGGCACTAATGGAGTCGAACAAGGAATCAAACAGCTCTGAGCATGTAATCAAAACTAAAGTTGATCGCATCATAAAGACTGAAGAGTTCAAAAATGCGAGTCTTATTCATGAAGATGAAGTAGAAGATTCTAAACAAGAGCAGAAAAATGAAAGCATTACAGACAGTGTTACTACTAGTCCCATTTCAAGCAGCGGTGACGATGATGATCATGAAACAAAGATTGTTGAAGTTGTGACAAAGAGTGTGGAGCCAATTATTTGCAATGTCAAGCAACCAAGAACTGAATATTGCGAGGTAAACGGTGATGCTCGGGTTGATGGAAAATCCTCCTCAGTTATTGTTGCTTCATCAGCTAGCAATAGCTCCTGGACTATAAGAACTTATGCTCGAAAAGAAGATCCAACAGCAATGAGTCACGCTCGGAAATGGTTTGTGAAACCAGCAAGTACTGATGACCAGGAATTTCCTCAATGTAGTCGGAATCATAATGTTCCAGCCATTTTGTTTTCGAGTGGAGGATACACCGGAAACCATTTCCATGATTTCACTGATGTGGTGATTCCTCTCTTCATAACTTCACGAAAATACAAGGGTGAAGTTCAGTTTCTTGTCACGGATATACGACCATTTTGGATTGAAAAGTTCAAAGCAGTACTAAAAGGATTGTCCAACTATCAGTTCATTGACATTGACAAAGAACAAGTAGTCCATTGCTTCCCAAGCATAACCGTTGGCCTCATACGACACGGAAAGGAGCTGAGCATCAATGATCCTTCAAAGTATTCTCTTTCTATGAAAGACTTTAGAAAGTTTTTGAGGACAACTTATTCCTTAAAGAAAGTTAATGCAATTAGAGTCAAGGATGGTCAACGCAAAAAGCCGCGGCTTCTGATCATCCCAAGGAAGAGAACGAGGTCTTTCACTAATACAGGAGAGATTATGAGAATGGCAAAACGCTTGGGGTACAAGGTAAGTGTGGCAGAAGCTAGCATGGACGTCGCAAAATTTGCAGAACTTGTAAATTCTTGTGATGTATTGATGGGAGTTCATGGAGCTGGCCTCACAAACATTCTTTTTCTTCCGGAAAATGCAGTCTTCATCCAAATACTTCCTGTTGGAGGGTTTGAATGGCTTGCGGCGACCGATTTTGGAGAGCCTTCACAGGATATGAATCTCAAGTACTTGGAGTATAAGATAAGTAATGAGGAGAGCACATTAATACAGCAATACCCACTAGACCATGCAGTTTTTACTGACCCCTACTCTATTGGAAAACAGGGGTGGGAAGCCTTCAAGTCAATCTTTTTGGATAAGCAAAATGTAAAACTCAATGTCAACAGGTTCAAACCCACTTTGTTAAAAGCCCTTGAGCTTCTGCATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

522

Amino Acids

59.13

Weight (kDa)

8.8

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 322 - 428 1.8e-13 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1182
AccII CGCG 1 cut(s) 1066
AccIII TCCGGA 1 cut(s) 1264
AciI CCGC 4 cut(s) 375, 1064, 1066, 1319
AclWI GGATC 2 cut(s) 575, 947
AcsI RAATTY 4 cut(s) 145, 644, 1187, 1204
AcuI CTGAAG 2 cut(s) 134, 282
AcyI GRCGYC 1 cut(s) 1179
AdeI CACNNNGTG 1 cut(s) 164
AfaI GTAC 5 cut(s) 8, 631, 837, 1148, 1364
AfiI CCNNNNNNNGG 1 cut(s) 1301
AhlI ACTAGT 1 cut(s) 356
AjnI CCWGG 2 cut(s) 548, 639
AjuI GAANNNNNNNTTGG 2 cut(s) 845, 877
AleI CACNNNNGTG 1 cut(s) 734
AloI GAACNNNNNNTCC 2 cut(s) 873, 905
AluBI AGCT 8 cut(s) 30, 216, 536, 546, 940, 1169, 1238, 1555
AluI AGCT 8 cut(s) 30, 216, 536, 546, 940, 1169, 1238, 1555
Alw21I GWGCWC 1 cut(s) 1397
AlwI GGATC 2 cut(s) 575, 947
Ama87I CYCGRG 1 cut(s) 492
Aor13HI TCCGGA 1 cut(s) 1264
AoxI GGCC 2 cut(s) 916, 1240
ApeKI GCWGC 3 cut(s) 78, 151, 372
ApoI RAATTY 4 cut(s) 145, 644, 1187, 1204
AseI ATTAAT 1 cut(s) 1400
AsuHPI GGTGA 4 cut(s) 389, 497, 751, 788
AsuNHI GCTAGC 2 cut(s) 536, 1169
AvaI CYCGRG 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 1270
Bbv12I GWGCWC 1 cut(s) 1397
BbvI GCAGC 3 cut(s) 65, 163, 384
BccI CCATC 3 cut(s) 494, 1040, 1216
BcgI CGANNNNNNTGC 2 cut(s) 1162, 1196
BciT130I CCWGG 2 cut(s) 550, 641
BciVI GTATCC 1 cut(s) 695
BclI TGATCA 2 cut(s) 388, 1074
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 4 cut(s) 357, 537, 1170, 1418
BfuI GTATCC 1 cut(s) 695
BisI GCNGC 6 cut(s) 79, 152, 373, 1064, 1067, 1320
BlpI GCTNAGC 1 cut(s) 941
BlsI GCNGC 6 cut(s) 80, 153, 374, 1065, 1068, 1321
BmcAI AGTACT 3 cut(s) 631, 837, 1364
Bme1390I CCNGG 2 cut(s) 550, 641
BmeT110I CYCGRG 1 cut(s) 492
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 2 cut(s) 550, 641
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 3 cut(s) 258, 478, 954
BmtI GCTAGC 2 cut(s) 540, 1173
BmuI ACTGGG 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 1270
BplI GAGNNNNNCTC 4 cut(s) 586, 618, 1227, 1259
Bpu1102I GCTNAGC 1 cut(s) 941
BpuEI CTTGAG 1 cut(s) 1343
BsaBI GATNNNNATC 2 cut(s) 387, 1353
BsaHI GRCGYC 1 cut(s) 1179
BsaJI CCNNGG 2 cut(s) 1064, 1082
BsaWI WCCGGW 2 cut(s) 707, 1264
Bsc4I CCNNNNNNNGG 1 cut(s) 1301
Bse1I ACTGG 2 cut(s) 120, 186
Bse3DI GCAATG 3 cut(s) 451, 597, 892
Bse8I GATNNNNATC 2 cut(s) 387, 1353
BseAI TCCGGA 1 cut(s) 1264
BseBI CCWGG 2 cut(s) 550, 641
BseDI CCNNGG 2 cut(s) 1064, 1082
BseGI GGATG 3 cut(s) 1051, 1077, 1281
BseJI GATNNNNATC 2 cut(s) 387, 1353
BseLI CCNNNNNNNGG 1 cut(s) 1301
BseMI GCAATG 3 cut(s) 451, 597, 892
BseMII CTCAG 3 cut(s) 210, 528, 932
BseNI ACTGG 2 cut(s) 120, 186
BseRI GAGGAG 2 cut(s) 502, 1403
BseXI GCAGC 3 cut(s) 65, 163, 384
Bsh1236I CGCG 1 cut(s) 1066
Bsh1285I CGRYCG 1 cut(s) 1326
BshFI GGCC 2 cut(s) 918, 1242
BsiEI CGRYCG 1 cut(s) 1326
BsiHKAI GWGCWC 1 cut(s) 1397
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 2 cut(s) 708, 1265
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 1301
BsmFI GGGAC 1 cut(s) 345
BsnI GGCC 2 cut(s) 918, 1242
BsoBI CYCGRG 1 cut(s) 492
Bsp1286I GDGCHC 1 cut(s) 1397
Bsp13I TCCGGA 1 cut(s) 1264
Bsp143I GATC 6 cut(s) 155, 244, 388, 580, 952, 1074
Bsp1720I GCTNAGC 1 cut(s) 941
BspACI CCGC 4 cut(s) 375, 1064, 1066, 1319
BspANI GGCC 2 cut(s) 918, 1242
BspCNI CTCAG 3 cut(s) 211, 527, 933
BspEI TCCGGA 1 cut(s) 1264
BspFNI CGCG 1 cut(s) 1066
BspHI TCATGA 2 cut(s) 289, 391
BspLI GGNNCC 1 cut(s) 432
BspOI GCTAGC 2 cut(s) 540, 1173
BspPI GGATC 2 cut(s) 575, 947
BsrDI GCAATG 3 cut(s) 451, 597, 892
BsrI ACTGG 2 cut(s) 120, 186
BssECI CCNNGG 2 cut(s) 1064, 1082
BssMI GATC 6 cut(s) 155, 244, 388, 580, 952, 1074
BssNI GRCGYC 1 cut(s) 1179
BssT1I CCWWGG 1 cut(s) 1082
Bst2UI CCWGG 2 cut(s) 550, 641
Bst4CI ACNGT 4 cut(s) 109, 347, 485, 913
Bst6I CTCTTC 3 cut(s) 258, 755, 1082
BstACI GRCGYC 1 cut(s) 1179
BstAPI GCANNNNNTGC 1 cut(s) 1190
BstC8I GCNNGC 4 cut(s) 538, 1171, 1240, 1317
BstDEI CTNAG 3 cut(s) 219, 514, 941
BstDSI CCRYGG 1 cut(s) 1064
BstENI CCTNNNNNAGG 1 cut(s) 1299
BstF5I GGATG 3 cut(s) 1051, 1077, 1281
BstFNI CGCG 1 cut(s) 1066
BstKTI GATC 6 cut(s) 158, 247, 391, 583, 955, 1077
BstMBI GATC 6 cut(s) 155, 244, 388, 580, 952, 1074
BstMCI CGRYCG 1 cut(s) 1326
BstMWI GCNNNNNNNGC 3 cut(s) 533, 903, 1190
BstNI CCWGG 2 cut(s) 550, 641
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 548, 639
BstUI CGCG 1 cut(s) 1066
BstV1I GCAGC 3 cut(s) 65, 163, 384
BstV2I GAAGAC 1 cut(s) 1270
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BsuI GTATCC 1 cut(s) 695
BsuRI GGCC 2 cut(s) 918, 1242
BtgI CCRYGG 1 cut(s) 1064
BtsCI GGATG 3 cut(s) 1051, 1077, 1281
BtsIMutI CAGTG 3 cut(s) 114, 352, 729
Cac8I GCNNGC 4 cut(s) 538, 1171, 1240, 1317
CciI TCATGA 2 cut(s) 289, 391
Cfr42I CCGCGG 1 cut(s) 1067
Csp6I GTAC 5 cut(s) 7, 630, 836, 1147, 1363
CspCI CAANNNNNGTGG 2 cut(s) 408, 443
CviAII CATG 8 cut(s) 41, 224, 290, 392, 722, 1174, 1232, 1424
CviQI GTAC 5 cut(s) 7, 630, 836, 1147, 1363
DdeI CTNAG 3 cut(s) 219, 514, 941
DpnI GATC 6 cut(s) 157, 246, 390, 582, 954, 1076
DpnII GATC 6 cut(s) 155, 244, 388, 580, 952, 1074
DraIII CACNNNGTG 1 cut(s) 164
Eam1104I CTCTTC 3 cut(s) 258, 755, 1082
EarI CTCTTC 3 cut(s) 258, 755, 1082
Eco130I CCWWGG 1 cut(s) 1082
Eco57I CTGAAG 2 cut(s) 134, 282
Eco88I CYCGRG 1 cut(s) 492
EcoNI CCTNNNNNAGG 1 cut(s) 1299
EcoRII CCWGG 2 cut(s) 548, 639
EcoT14I CCWWGG 1 cut(s) 1082
ErhI CCWWGG 1 cut(s) 1082
FaeI CATG 8 cut(s) 44, 227, 293, 395, 725, 1177, 1235, 1427
FalI AAGNNNNNCTT 2 cut(s) 1469, 1501
FaqI GGGAC 1 cut(s) 345
FatI CATG 8 cut(s) 40, 223, 289, 391, 721, 1173, 1231, 1423
FbaI TGATCA 2 cut(s) 388, 1074
Fnu4HI GCNGC 6 cut(s) 79, 152, 373, 1064, 1067, 1320
FokI GGATG 3 cut(s) 1058, 1064, 1268
Fsp4HI GCNGC 6 cut(s) 79, 152, 373, 1064, 1067, 1320
FspBI CTAG 4 cut(s) 357, 537, 1170, 1418
GluI GCNGC 6 cut(s) 79, 152, 373, 1064, 1067, 1320
HaeIII GGCC 2 cut(s) 918, 1242
HapII CCGG 2 cut(s) 708, 1265
Hin1I GRCGYC 1 cut(s) 1179
Hin1II CATG 8 cut(s) 44, 227, 293, 395, 725, 1177, 1235, 1427
HincII GTYRAC 2 cut(s) 1052, 1519
HindII GTYRAC 2 cut(s) 1052, 1519
HindIII AAGCTT 1 cut(s) 28
HpaII CCGG 2 cut(s) 708, 1265
HphI GGTGA 4 cut(s) 389, 497, 751, 788
Hpy166II GTNNAC 3 cut(s) 481, 1052, 1519
Hpy188I TCNGA 5 cut(s) 170, 220, 606, 663, 1074
Hpy188III TCNNGA 4 cut(s) 290, 392, 762, 1265
Hpy8I GTNNAC 3 cut(s) 481, 1052, 1519
Hpy99I CGWCG 1 cut(s) 1184
HpyAV CCTTC 3 cut(s) 966, 1350, 1483
HpyCH4III ACNGT 4 cut(s) 109, 347, 485, 913
HpyCH4IV ACGT 1 cut(s) 1179
HpyCH4V TGCA 8 cut(s) 105, 151, 444, 1031, 1193, 1274, 1427, 1561
HpyF10VI GCNNNNNNNGC 3 cut(s) 533, 903, 1190
HpyF3I CTNAG 3 cut(s) 219, 514, 941
HpySE526I ACGT 1 cut(s) 1179
Hsp92I GRCGYC 1 cut(s) 1179
Hsp92II CATG 8 cut(s) 44, 227, 293, 395, 725, 1177, 1235, 1427
Kpn2I TCCGGA 1 cut(s) 1264
Ksp22I TGATCA 2 cut(s) 388, 1074
KspI CCGCGG 1 cut(s) 1067
Kzo9I GATC 6 cut(s) 155, 244, 388, 580, 952, 1074
LmnI GCTCC 5 cut(s) 65, 430, 551, 937, 1235
Lsp1109I GCAGC 3 cut(s) 65, 163, 384
LweI GCATC 3 cut(s) 258, 478, 954
MaeI CTAG 4 cut(s) 357, 537, 1170, 1418
MaeII ACGT 1 cut(s) 1179
MaeIII GTNAC 5 cut(s) 349, 377, 415, 596, 793
MalI GATC 6 cut(s) 157, 246, 390, 582, 954, 1076
MboI GATC 6 cut(s) 155, 244, 388, 580, 952, 1074
MboII GAAGA 9 cut(s) 61, 275, 305, 317, 590, 742, 1099, 1253, 1270
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 1 cut(s) 1397
MluCI AATT 7 cut(s) 53, 145, 435, 644, 1032, 1187, 1204
MlyI GAGTC 4 cut(s) 203, 289, 604, 1047
MmeI TCCRAC 4 cut(s) 608, 641, 876, 1279
MroI TCCGGA 1 cut(s) 1264
MseI TTAA 4 cut(s) 1016, 1026, 1400, 1541
MslI CAYNNNNRTG 3 cut(s) 294, 720, 734
MspA1I CMGCKG 2 cut(s) 375, 1066
MspI CCGG 2 cut(s) 708, 1265
MspR9I CCNGG 2 cut(s) 550, 641
MvaI CCWGG 2 cut(s) 550, 641
MvnI CGCG 1 cut(s) 1066
MwoI GCNNNNNNNGC 3 cut(s) 533, 903, 1190
NdeII GATC 6 cut(s) 155, 244, 388, 580, 952, 1074
NheI GCTAGC 2 cut(s) 536, 1169
NlaIII CATG 8 cut(s) 44, 227, 293, 395, 725, 1177, 1235, 1427
NlaIV GGNNCC 1 cut(s) 432
NmuCI GTSAC 4 cut(s) 377, 415, 596, 793
NspI RCATGY 1 cut(s) 227
OliI CACNNNNGTG 1 cut(s) 734
PagI TCATGA 2 cut(s) 289, 391
PfeI GAWTC 7 cut(s) 11, 127, 206, 308, 664, 742, 1354
PfoI TCCNGGA 1 cut(s) 548
PkrI GCNGC 6 cut(s) 80, 153, 374, 1065, 1068, 1321
PleI GAGTC 4 cut(s) 202, 288, 603, 1046
PpsI GAGTC 4 cut(s) 202, 288, 603, 1046
PshBI ATTAAT 1 cut(s) 1400
Psp6I CCWGG 2 cut(s) 548, 639
PspGI CCWGG 2 cut(s) 548, 639
PspN4I GGNNCC 1 cut(s) 432
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 5 cut(s) 8, 631, 837, 1148, 1364
RsaNI GTAC 5 cut(s) 7, 630, 836, 1147, 1363
RseI CAYNNNNRTG 3 cut(s) 294, 720, 734
SacII CCGCGG 1 cut(s) 1067
SaqAI TTAA 4 cut(s) 1016, 1026, 1400, 1541
SatI GCNGC 6 cut(s) 79, 152, 373, 1064, 1067, 1320
Sau3AI GATC 6 cut(s) 155, 244, 388, 580, 952, 1074
ScaI AGTACT 3 cut(s) 631, 837, 1364
SchI GAGTC 4 cut(s) 203, 289, 604, 1047
ScrFI CCNGG 2 cut(s) 550, 641
SduI GDGCHC 1 cut(s) 1397
SfaNI GCATC 3 cut(s) 258, 478, 954
Sfr303I CCGCGG 1 cut(s) 1067
SgrBI CCGCGG 1 cut(s) 1067
SmiMI CAYNNNNRTG 3 cut(s) 294, 720, 734
SmlI CTYRAG 2 cut(s) 1358, 1550
SmoI CTYRAG 2 cut(s) 1358, 1550
SpeI ACTAGT 1 cut(s) 356
Sse9I AATT 7 cut(s) 53, 145, 435, 644, 1032, 1187, 1204
SsiI CCGC 4 cut(s) 375, 1064, 1066, 1319
SspI AATATT 1 cut(s) 470
SspMI CTAG 4 cut(s) 357, 537, 1170, 1418
StyD4I CCNGG 2 cut(s) 548, 639
StyI CCWWGG 1 cut(s) 1082
TaaI ACNGT 4 cut(s) 109, 347, 485, 913
TaiI ACGT 1 cut(s) 1182
TaqI TCGA 4 cut(s) 14, 197, 571, 692
TaqII GACCGA 1 cut(s) 1340
TasI AATT 7 cut(s) 53, 145, 435, 644, 1032, 1187, 1204
TatI WGTACW 3 cut(s) 629, 835, 1362
TauI GCSGC 3 cut(s) 1066, 1069, 1322
TfiI GAWTC 7 cut(s) 11, 127, 206, 308, 664, 742, 1354
Tru1I TTAA 4 cut(s) 1016, 1026, 1400, 1541
Tru9I TTAA 4 cut(s) 1016, 1026, 1400, 1541
TscAI CASTG 3 cut(s) 114, 352, 736
TseFI GTSAC 4 cut(s) 377, 415, 596, 793
TseI GCWGC 3 cut(s) 78, 151, 372
Tsp45I GTSAC 4 cut(s) 377, 415, 596, 793
TspGWI ACGGA 2 cut(s) 812, 945
TspRI CASTG 3 cut(s) 114, 352, 736
VspI ATTAAT 1 cut(s) 1400
XagI CCTNNNNNAGG 1 cut(s) 1299
XapI RAATTY 4 cut(s) 145, 644, 1187, 1204
XceI RCATGY 1 cut(s) 227
XspI CTAG 4 cut(s) 357, 537, 1170, 1418
ZraI GACGTC 1 cut(s) 1180
ZrmI AGTACT 3 cut(s) 631, 837, 1364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.