Rh7AG020900

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001096
Physical Location & Seq
Forward (+)
1415158 .. 1415772
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG020900.1

Sequence Viewer

Length: 615 bp
ATGAGTCACGCTCGGAAGTGGTTAGTGAAACCACTGAGTACTGATCACCAGGAAATCCCTCAATGTACTCAGAATCATAGTGTTCCAGCTGCCCTTTTGTTTTCGACTGGAGGATTCACTGGAAACCATTTCCATGACTTCACTGATGTGGAGATTCCACTCTTTATTACCTCTGGACTATATAAGGGTGAAGTTCAATTTCTAATCACGGATACAAGACTATGGTGGATTAAAAAGTTCCAAGAAGTACTAAAAAGATTGTCCAACTATCAGTTCATTGACATTGACAAAGAACAAGTAGTCCATTGCTTTCCAAGCATAACTGTTGGCCTCATAAGACATGAAAAGGAGCTGACCATTAATGATCGTTCGAAGTATTCTCTTTCCATGAAAGACTTCAGAAAGTTTCTGAGGACAACTTATTCTTTGAAGAAAACTAATGCAATTAGAGTCAAGGATGGTCAGCACCAAAAGCGGTGGCTTCTCATCATACCAAGGAAGAGAACAAGGTCTTTCACAAATACAGGACAGATTGGGAGAATGGCAAGAAGCTTGGGGTACAAGGTAAGTGTGGCAGAGGCTGACACGAACGTCACGAATTTGCACAGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

204

Amino Acids

23.74

Weight (kDa)

9.93

Isoelectric Point (pI)

26.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 590
AciI CCGC 1 cut(s) 475
AcsI RAATTY 1 cut(s) 598
AcuI CTGAAG 1 cut(s) 382
AfaI GTAC 4 cut(s) 40, 67, 249, 560
AgsI TTSAA 2 cut(s) 197, 430
AjnI CCWGG 1 cut(s) 48
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AleI CACNNNNGTG 1 cut(s) 146
AloI GAACNNNNNNTCC 2 cut(s) 285, 317
AluBI AGCT 4 cut(s) 89, 352, 552, 609
AluI AGCT 4 cut(s) 89, 352, 552, 609
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 598
AseI ATTAAT 1 cut(s) 360
Asp700I GAANNNNTTC 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 38, 200
AsuII TTCGAA 1 cut(s) 371
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 452
BciT130I CCWGG 1 cut(s) 50
BciVI GTATCC 1 cut(s) 205
BclI TGATCA 1 cut(s) 43
BfuI GTATCC 1 cut(s) 205
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BmcAI AGTACT 2 cut(s) 40, 249
Bme1390I CCNGG 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 50
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 494
Bse1I ACTGG 2 cut(s) 112, 124
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 494
BseGI GGATG 1 cut(s) 463
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 3 cut(s) 26, 83, 401
BseNI ACTGG 2 cut(s) 112, 124
BseXI GCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 330
BsnI GGCC 1 cut(s) 330
Bsp119I TTCGAA 1 cut(s) 371
Bsp143I GATC 2 cut(s) 43, 364
BspACI CCGC 1 cut(s) 475
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 3 cut(s) 27, 82, 402
BspT104I TTCGAA 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 304
BsrI ACTGG 2 cut(s) 112, 124
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 2 cut(s) 43, 364
BssT1I CCWWGG 1 cut(s) 494
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 494
BstBI TTCGAA 1 cut(s) 371
BstDEI CTNAG 3 cut(s) 35, 69, 410
BstF5I GGATG 1 cut(s) 463
BstKTI GATC 2 cut(s) 46, 367
BstMBI GATC 2 cut(s) 43, 364
BstMWI GCNNNNNNNGC 2 cut(s) 315, 472
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 76
BsuI GTATCC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 330
BtsCI GGATG 1 cut(s) 463
BtsIMutI CAGTG 3 cut(s) 32, 117, 141
CaiI CAGNNNCTG 1 cut(s) 581
Csp6I GTAC 4 cut(s) 39, 66, 248, 559
CspCI CAANNNNNGTGG 2 cut(s) 458, 493
CviAII CATG 3 cut(s) 134, 341, 388
CviJI RGCY 7 cut(s) 89, 330, 352, 481, 552, 581, 609
CviKI_1 RGCY 7 cut(s) 89, 330, 352, 481, 552, 581, 609
CviQI GTAC 4 cut(s) 39, 66, 248, 559
DdeI CTNAG 3 cut(s) 35, 69, 410
DpnI GATC 2 cut(s) 45, 366
DpnII GATC 2 cut(s) 43, 364
DrdI GACNNNNNNGTC 1 cut(s) 590
DseDI GACNNNNNNGTC 1 cut(s) 590
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
Eco130I CCWWGG 1 cut(s) 494
Eco57I CTGAAG 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 494
FaeI CATG 3 cut(s) 137, 344, 391
FatI CATG 3 cut(s) 133, 340, 387
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 330
Hin1II CATG 3 cut(s) 137, 344, 391
HindIII AAGCTT 1 cut(s) 550
HinfI GANTC 5 cut(s) 4, 73, 114, 154, 450
HphI GGTGA 2 cut(s) 38, 200
Hpy188I TCNGA 4 cut(s) 15, 72, 401, 411
Hpy188III TCNNGA 2 cut(s) 174, 595
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 2 cut(s) 443, 604
HpyF10VI GCNNNNNNNGC 2 cut(s) 315, 472
HpyF3I CTNAG 3 cut(s) 35, 69, 410
HpySE526I ACGT 1 cut(s) 591
Hsp92II CATG 3 cut(s) 137, 344, 391
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 2 cut(s) 43, 364
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 7 cut(s) 35, 62, 93, 99, 105, 159, 510
Lsp1109I GCAGC 1 cut(s) 76
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 2 cut(s) 5, 592
MalI GATC 2 cut(s) 45, 366
MboI GATC 2 cut(s) 43, 364
MboII GAAGA 2 cut(s) 442, 511
MluCI AATT 3 cut(s) 197, 444, 598
MlyI GAGTC 2 cut(s) 13, 459
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 6 cut(s) 69, 104, 181, 341, 405, 571
MroXI GAANNNNTTC 1 cut(s) 395
MseI TTAA 2 cut(s) 231, 360
MslI CAYNNNNRTG 2 cut(s) 132, 146
MspA1I CMGCKG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 315, 472
NdeII GATC 2 cut(s) 43, 364
NlaIII CATG 3 cut(s) 137, 344, 391
NmuCI GTSAC 2 cut(s) 5, 592
NspV TTCGAA 1 cut(s) 371
OliI CACNNNNGTG 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 593
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 3 cut(s) 73, 114, 154
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 2 cut(s) 12, 458
PpsI GAGTC 2 cut(s) 12, 458
PshBI ATTAAT 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PstNI CAGNNNCTG 1 cut(s) 581
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 4 cut(s) 40, 67, 249, 560
RsaNI GTAC 4 cut(s) 39, 66, 248, 559
RseI CAYNNNNRTG 2 cut(s) 132, 146
SaqAI TTAA 2 cut(s) 231, 360
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 2 cut(s) 43, 364
ScaI AGTACT 2 cut(s) 40, 249
SchI GAGTC 2 cut(s) 13, 459
ScrFI CCNGG 1 cut(s) 50
SetI ASST 8 cut(s) 91, 173, 354, 512, 554, 567, 594, 611
SfuI TTCGAA 1 cut(s) 371
SmiMI CAYNNNNRTG 2 cut(s) 132, 146
Sse9I AATT 3 cut(s) 197, 444, 598
SsiI CCGC 1 cut(s) 475
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 494
TaaI ACNGT 1 cut(s) 325
TaiI ACGT 1 cut(s) 594
TaqI TCGA 2 cut(s) 104, 371
TasI AATT 3 cut(s) 197, 444, 598
TatI WGTACW 3 cut(s) 38, 65, 247
TfiI GAWTC 3 cut(s) 73, 114, 154
Tru1I TTAA 2 cut(s) 231, 360
Tru9I TTAA 2 cut(s) 231, 360
TscAI CASTG 3 cut(s) 39, 124, 148
TseFI GTSAC 2 cut(s) 5, 592
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 2 cut(s) 5, 592
TspDTI ATGAA 3 cut(s) 265, 357, 404
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 3 cut(s) 39, 124, 148
VspI ATTAAT 1 cut(s) 360
XapI RAATTY 1 cut(s) 598
XmnI GAANNNNTTC 1 cut(s) 395
ZrmI AGTACT 2 cut(s) 40, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.