AT3G18170

transferring glycosyl groups

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001096
Physical Location & Seq
Forward (+)
6227341 .. 6229721
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18170.1

Sequence Viewer

Length: 1155 bp
ATGAAACCTATATGCACCAAGCTAGCAAGAACAGAGTTCTGTGAATTAAACGGCGACGTAAGAGTCCACGGTAAGTCCGCGACTGTTTCTGCTGCGATCACGTTTGCGTTTTCGGGAAATTCCACGTGGCATATAAGACCTTACGCGCGAAAAGGTGACACGGTGGCAATGAAGCGCGTGAGAGAATGGACGGTGAAATTGGAACAAAACGCTGACCAATTAGAAAACGCTAATTTCTCGCGTTGCGTTAGGAATCACAGCGTTCCGGCGATGATTTTCTCTCTCGGAGGCTACTCGATGAACAATTTCCACGATTTCACCGATATAGTGATTCCTCTGTACACGACGGCGCGTCGATTCAACGGAGAAGTACAGTTTCTCGTGACGAACAAGAGTCCATCGTGGATCAACAAATTTAAGGAATTAGTGAGGAAACTCTCTAATTACGAAGTGATTTACATCGACGAAGAAGACGAAACGCATTGTTTCAGCAGCGTCACCGTCGGTCTCACTCGCCACCGTGAGTATTTCAAAGAGTTGACGATCGATCCTTCGAATTCGGAGTATTCAATGTCCGATTTCCGGAGTTTTCTAAGAGACACCTACTCGTTGAGAAACGACGCCGTGGCTACGAGACAGATCCGGCGGCGGAGGCCACGGATTCTGATTTTGGCTAGAGGCAGATCGCGAGCGTTCGTAAACACCGGCGAAATCGCGAGAGCGGCGAGACAGATCGGATTCAAAGTCGTGGTGGCGGAAGCGAACATCGGAATCGCGAAATTCGCGCAAACGGTGAATTCCTGCGACGTGATGCTCGGCGTTCACGGCGCGGGGCTGACGAACATGGTGTTCTTGCCGGAGAACGCGGTGGTGATTCAGGTTCTTCCGATCGGTGGATTCGAGTGGCTTGCGAAAACGGATTTTGAGAAACCTTCGGAGGGAATGAATCTGAGGTACTTGGAGTACAAGATCGCGGTGGAGGAGAGCACGCTGGTGAAGAAGTACGGACGCGACCACGAAATCGTGAGAGATCCATCGGCGGTTGCAAAACACGGGTGGGAAATGTTCAAATCGGTTTATTTGGTACAACAGAACGTGAGTATTGATATAAACCGGTTCAAGCCGGTTCTTGTCAAAGCTCTTGAGTTATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

384

Amino Acids

43.79

Weight (kDa)

9.37

Isoelectric Point (pI)

32.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 193 - 292 2.5e-12 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
AccBSI CCGCTC 1 cut(s) 722
AccIII TCCGGA 1 cut(s) 582
AciI CCGC 9 cut(s) 78, 646, 649, 722, 755, 830, 866, 974, 1040
AclWI GGATC 4 cut(s) 413, 542, 634, 1025
AcsI RAATTY 5 cut(s) 118, 413, 556, 779, 796
AcvI CACGTG 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 621
AfaI GTAC 6 cut(s) 341, 372, 956, 965, 1004, 1086
AfiI CCNNNNNNNGG 3 cut(s) 582, 893, 938
AgeI ACCGGT 1 cut(s) 1113
AgsI TTSAA 6 cut(s) 361, 532, 570, 742, 1069, 1120
AhdI GACNNNNNGTC 1 cut(s) 351
AjiI CACGTC 1 cut(s) 808
AleI CACNNNNGTG 1 cut(s) 992
AluBI AGCT 2 cut(s) 22, 1139
AluI AGCT 2 cut(s) 22, 1139
Alw21I GWGCWC 1 cut(s) 989
Alw26I GTCTC 4 cut(s) 512, 591, 628, 721
AlwI GGATC 4 cut(s) 413, 542, 634, 1025
Aor13HI TCCGGA 1 cut(s) 582
AoxI GGCC 1 cut(s) 653
ApeKI GCWGC 2 cut(s) 92, 492
ApoI RAATTY 5 cut(s) 118, 413, 556, 779, 796
AsiGI ACCGGT 1 cut(s) 1113
Asp700I GAANNNNTTC 1 cut(s) 305
AspLEI GCGC 5 cut(s) 148, 177, 352, 787, 830
AsuHPI GGTGA 7 cut(s) 167, 205, 310, 490, 805, 883, 1006
AsuII TTCGAA 1 cut(s) 554
AsuNHI GCTAGC 1 cut(s) 22
BauI CACGAG 1 cut(s) 380
BbrPI CACGTG 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 989
BbvI GCAGC 2 cut(s) 79, 504
BccI CCATC 2 cut(s) 406, 1042
BceAI ACGGC 4 cut(s) 67, 363, 608, 841
BcgI CGANNNNNNTGC 2 cut(s) 890, 924
BcoDI GTCTC 4 cut(s) 512, 591, 628, 721
BfaI CTAG 2 cut(s) 23, 675
BisI GCNGC 4 cut(s) 93, 493, 647, 723
BlsI GCNGC 4 cut(s) 94, 494, 648, 724
BmeRI GACNNNNNGTC 1 cut(s) 351
BmgBI CACGTC 1 cut(s) 808
BmsI GCATC 1 cut(s) 801
BmtI GCTAGC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 554
Bsa29I ATCGAT 1 cut(s) 546
BsaAI YACGTR 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 621
BsaI GGTCTC 1 cut(s) 512
BsaJI CCNNGG 3 cut(s) 67, 624, 656
BsaWI WCCGGW 2 cut(s) 582, 1113
Bsc4I CCNNNNNNNGG 3 cut(s) 582, 893, 938
Bse118I RCCGGY 3 cut(s) 704, 1113, 1123
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 458
BseAI TCCGGA 1 cut(s) 582
BseCI ATCGAT 1 cut(s) 546
BseDI CCNNGG 3 cut(s) 67, 624, 656
BseJI GATNNNNATC 1 cut(s) 458
BseLI CCNNNNNNNGG 3 cut(s) 582, 893, 938
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 941
BseRI GAGGAG 1 cut(s) 995
BseXI GCAGC 2 cut(s) 79, 504
Bsh1285I CGRYCG 2 cut(s) 546, 891
BshFI GGCC 1 cut(s) 655
BshTI ACCGGT 1 cut(s) 1113
BshVI ATCGAT 1 cut(s) 546
BsiEI CGRYCG 2 cut(s) 546, 891
BsiHKAI GWGCWC 1 cut(s) 989
BsiSI CCGG 7 cut(s) 266, 583, 643, 705, 857, 1114, 1124
BslI CCNNNNNNNGG 3 cut(s) 582, 893, 938
BsmAI GTCTC 4 cut(s) 512, 591, 628, 721
BsnI GGCC 1 cut(s) 655
Bso31I GGTCTC 1 cut(s) 512
Bsp119I TTCGAA 1 cut(s) 554
Bsp1286I GDGCHC 1 cut(s) 989
Bsp13I TCCGGA 1 cut(s) 582
Bsp1407I TGTACA 1 cut(s) 339
Bsp68I TCGCGA 3 cut(s) 688, 716, 776
BspACI CCGC 9 cut(s) 78, 646, 649, 722, 755, 830, 866, 974, 1040
BspANI GGCC 1 cut(s) 655
BspCNI CTCAG 1 cut(s) 942
BspDI ATCGAT 1 cut(s) 546
BspEI TCCGGA 1 cut(s) 582
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 4 cut(s) 413, 542, 634, 1025
BspT104I TTCGAA 1 cut(s) 554
BspTNI GGTCTC 1 cut(s) 512
BsrBI CCGCTC 1 cut(s) 722
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 3 cut(s) 704, 1113, 1123
BsrGI TGTACA 1 cut(s) 339
BssAI RCCGGY 3 cut(s) 704, 1113, 1123
BssECI CCNNGG 3 cut(s) 67, 624, 656
BssNI GRCGYC 1 cut(s) 621
BssSI CACGAG 1 cut(s) 380
Bst2BI CACGAG 1 cut(s) 380
Bst4CI ACNGT 8 cut(s) 71, 85, 163, 193, 375, 502, 521, 793
BstACI GRCGYC 1 cut(s) 621
BstAUI TGTACA 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 554
BstC8I GCNNGC 4 cut(s) 24, 690, 909, 989
BstDEI CTNAG 2 cut(s) 593, 950
BstDSI CCRYGG 3 cut(s) 67, 624, 656
BstHHI GCGC 5 cut(s) 148, 177, 352, 787, 830
BstMAI GTCTC 4 cut(s) 512, 591, 628, 721
BstMCI CGRYCG 2 cut(s) 546, 891
BstMWI GCNNNNNNNGC 4 cut(s) 652, 722, 782, 825
BstV1I GCAGC 2 cut(s) 79, 504
BstV2I GAAGAC 1 cut(s) 477
BstX2I RGATCY 2 cut(s) 639, 1030
BstYI RGATCY 2 cut(s) 639, 1030
Bsu15I ATCGAT 1 cut(s) 546
BsuRI GGCC 1 cut(s) 655
BsuTUI ATCGAT 1 cut(s) 546
BtgI CCRYGG 3 cut(s) 67, 624, 656
BtgZI GCGATG 1 cut(s) 284
BtrI CACGTC 1 cut(s) 808
BtuMI TCGCGA 3 cut(s) 688, 716, 776
Cac8I GCNNGC 4 cut(s) 24, 690, 909, 989
CfoI GCGC 5 cut(s) 148, 177, 352, 787, 830
Cfr10I RCCGGY 3 cut(s) 704, 1113, 1123
ClaI ATCGAT 1 cut(s) 546
CseI GACGC 4 cut(s) 341, 484, 629, 1017
Csp6I GTAC 6 cut(s) 340, 371, 955, 964, 1003, 1085
CspAI ACCGGT 1 cut(s) 1113
CviAII CATG 1 cut(s) 844
CviJI RGCY 9 cut(s) 22, 291, 629, 655, 674, 835, 907, 1123, 1139
CviKI_1 RGCY 9 cut(s) 22, 291, 629, 655, 674, 835, 907, 1123, 1139
CviQI GTAC 6 cut(s) 340, 371, 955, 964, 1003, 1085
DdeI CTNAG 2 cut(s) 593, 950
DrdI GACNNNNNNGTC 1 cut(s) 62
DriI GACNNNNNGTC 1 cut(s) 351
DseDI GACNNNNNNGTC 1 cut(s) 62
Eam1105I GACNNNNNGTC 1 cut(s) 351
EciI GGCGGA 2 cut(s) 664, 770
Eco31I GGTCTC 1 cut(s) 512
Eco72I CACGTG 1 cut(s) 126
EcoRI GAATTC 2 cut(s) 556, 796
FaeI CATG 1 cut(s) 847
FaiI YATR 7 cut(s) 11, 13, 132, 134, 326, 845, 1109
FatI CATG 1 cut(s) 843
FauI CCCGC 1 cut(s) 823
Fnu4HI GCNGC 4 cut(s) 93, 493, 647, 723
Fsp4HI GCNGC 4 cut(s) 93, 493, 647, 723
FspBI CTAG 2 cut(s) 23, 675
GlaI GCGC 5 cut(s) 147, 176, 351, 786, 829
GluI GCNGC 4 cut(s) 93, 493, 647, 723
HaeIII GGCC 1 cut(s) 655
HapII CCGG 7 cut(s) 266, 583, 643, 705, 857, 1114, 1124
HgaI GACGC 4 cut(s) 341, 484, 629, 1017
HhaI GCGC 5 cut(s) 148, 177, 352, 787, 830
Hin1I GRCGYC 1 cut(s) 621
Hin1II CATG 1 cut(s) 847
Hin6I GCGC 5 cut(s) 146, 175, 350, 785, 828
HinP1I GCGC 5 cut(s) 146, 175, 350, 785, 828
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HpaII CCGG 7 cut(s) 266, 583, 643, 705, 857, 1114, 1124
HphI GGTGA 7 cut(s) 167, 205, 310, 490, 805, 883, 1006
Hpy166II GTNNAC 5 cut(s) 67, 342, 540, 700, 823
Hpy188I TCNGA 9 cut(s) 287, 562, 577, 666, 737, 770, 888, 937, 951
Hpy188III TCNNGA 8 cut(s) 114, 382, 583, 687, 715, 775, 1024, 1142
Hpy8I GTNNAC 5 cut(s) 67, 342, 540, 700, 823
Hpy99I CGWCG 7 cut(s) 59, 349, 357, 467, 506, 623, 809
HpyAV CCTTC 2 cut(s) 561, 942
HpyCH4III ACNGT 8 cut(s) 71, 85, 163, 193, 375, 502, 521, 793
HpyCH4IV ACGT 5 cut(s) 57, 101, 125, 807, 1095
HpyCH4V TGCA 2 cut(s) 15, 1046
HpyF10VI GCNNNNNNNGC 4 cut(s) 652, 722, 782, 825
HpyF3I CTNAG 2 cut(s) 593, 950
HpySE526I ACGT 5 cut(s) 57, 101, 125, 807, 1095
Hsp92I GRCGYC 1 cut(s) 621
Hsp92II CATG 1 cut(s) 847
HspAI GCGC 5 cut(s) 146, 175, 350, 785, 828
Kpn2I TCCGGA 1 cut(s) 582
Lsp1109I GCAGC 2 cut(s) 79, 504
LweI GCATC 1 cut(s) 801
MaeI CTAG 2 cut(s) 23, 675
MaeII ACGT 5 cut(s) 57, 101, 125, 807, 1095
MaeIII GTNAC 3 cut(s) 155, 382, 496
MbiI CCGCTC 1 cut(s) 722
MboII GAAGA 4 cut(s) 479, 482, 875, 1009
MflI RGATCY 2 cut(s) 639, 1030
MhlI GDGCHC 1 cut(s) 989
MlyI GAGTC 2 cut(s) 72, 403
MnlI CCTC 8 cut(s) 281, 345, 423, 645, 671, 931, 945, 973
MroI TCCGGA 1 cut(s) 582
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 2 cut(s) 47, 417
MslI CAYNNNNRTG 1 cut(s) 992
MspI CCGG 7 cut(s) 266, 583, 643, 705, 857, 1114, 1124
MwoI GCNNNNNNNGC 4 cut(s) 652, 722, 782, 825
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 1 cut(s) 847
NmeAIII GCCGAG 1 cut(s) 795
NmuCI GTSAC 3 cut(s) 155, 382, 496
NruI TCGCGA 3 cut(s) 688, 716, 776
NspV TTCGAA 1 cut(s) 554
OliI CACNNNNGTG 1 cut(s) 992
PcsI WCGNNNNNNNCGW 3 cut(s) 318, 471, 897
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 9 cut(s) 253, 331, 357, 661, 738, 771, 874, 897, 946
PinAI ACCGGT 1 cut(s) 1113
PkrI GCNGC 4 cut(s) 94, 494, 648, 724
Ple19I CGATCG 2 cut(s) 546, 891
PleI GAGTC 2 cut(s) 71, 402
PmaCI CACGTG 1 cut(s) 126
PmlI CACGTG 1 cut(s) 126
PpsI GAGTC 2 cut(s) 71, 402
Ppu21I YACGTR 1 cut(s) 126
PspCI CACGTG 1 cut(s) 126
PsuI RGATCY 2 cut(s) 639, 1030
PvuI CGATCG 2 cut(s) 546, 891
RruI TCGCGA 3 cut(s) 688, 716, 776
RsaI GTAC 6 cut(s) 341, 372, 956, 965, 1004, 1086
RsaNI GTAC 6 cut(s) 340, 371, 955, 964, 1003, 1085
RseI CAYNNNNRTG 1 cut(s) 992
SaqAI TTAA 2 cut(s) 47, 417
SatI GCNGC 4 cut(s) 93, 493, 647, 723
SchI GAGTC 2 cut(s) 72, 403
SduI GDGCHC 1 cut(s) 989
SfaNI GCATC 1 cut(s) 801
SfuI TTCGAA 1 cut(s) 554
SgrAI CRCCGGYG 1 cut(s) 704
SmiMI CAYNNNNRTG 1 cut(s) 992
SmlI CTYRAG 1 cut(s) 1142
SmoI CTYRAG 1 cut(s) 1142
SsiI CCGC 9 cut(s) 78, 646, 649, 722, 755, 830, 866, 974, 1040
SspMI CTAG 2 cut(s) 23, 675
TaaI ACNGT 8 cut(s) 71, 85, 163, 193, 375, 502, 521, 793
TaiI ACGT 5 cut(s) 60, 104, 128, 810, 1098
TaqI TCGA 6 cut(s) 296, 355, 462, 546, 554, 900
TaqII GACCGA 1 cut(s) 494
TatI WGTACW 3 cut(s) 339, 370, 963
TauI GCSGC 2 cut(s) 649, 725
TfiI GAWTC 9 cut(s) 253, 331, 357, 661, 738, 771, 874, 897, 946
Tru1I TTAA 2 cut(s) 47, 417
Tru9I TTAA 2 cut(s) 47, 417
TseFI GTSAC 3 cut(s) 155, 382, 496
TseI GCWGC 2 cut(s) 92, 492
Tsp45I GTSAC 3 cut(s) 155, 382, 496
TspDTI ATGAA 4 cut(s) 17, 185, 314, 959
TspGWI ACGGA 4 cut(s) 378, 673, 932, 1020
XapI RAATTY 5 cut(s) 118, 413, 556, 779, 796
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 2 cut(s) 23, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.