Rh7AG021400

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001096
Physical Location & Seq
Forward (+)
1420205 .. 1420585
381 bp
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UTR
Exon/CDS
Intron
Rh7AG021400.1

Sequence Viewer

Length: 381 bp
ATGGTCAACGTAAAAAGCCGACTCCTGATCATATCTAGAAGGAGAACGAGGTCTTTCACAAATACAGAGGAAATTACTAAGATGGCTAGAAGCTTGGGATATGAGGTAACTGTTGCAGACGCTGACAAAAACATGTCAAAAATCGCAGAAGTTGTGAATTCTAGTGATGTGTTAATGGGAGTCCATGGAGCTGGCCTTGCAAACATTCTTTTCCATCCTGAAAATGCAATTTTTATTCAAACACTTCCTGTAGGAGGATTCGAATGGACTGCAGCAAACTACTTCCGAGAGCCTTCAAGAGATATGAATCTGAAGTATTTGGAATACAAGATAAGCAAGGAGAGCATAATGGAAAGTGAACCCCAATTGAATAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

126

Amino Acids

14.29

Weight (kDa)

7.99

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 5 - 77 2.7e-12 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 254
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 3 cut(s) 239, 297, 370
AluBI AGCT 2 cut(s) 93, 191
AluI AGCT 2 cut(s) 93, 191
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 157
AsuII TTCGAA 1 cut(s) 261
BbvI GCAGC 1 cut(s) 284
BccI CCATC 2 cut(s) 76, 222
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BclI TGATCA 1 cut(s) 27
BfaI CTAG 3 cut(s) 36, 87, 162
BfmI CTRYAG 2 cut(s) 249, 270
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bpu14I TTCGAA 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse8I GATNNNNATC 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 214
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 284
BshFI GGCC 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 254
BsnI GGCC 1 cut(s) 195
Bsp119I TTCGAA 1 cut(s) 261
Bsp143I GATC 1 cut(s) 27
Bsp19I CCATGG 1 cut(s) 184
BspANI GGCC 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 274
BspT104I TTCGAA 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 184
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 2 cut(s) 197, 342
BstNSI RCATGY 1 cut(s) 136
BstSFI CTRYAG 2 cut(s) 249, 270
BstV1I GCAGC 1 cut(s) 284
BstXI CCANNNNNNTGG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 193
CaiI CAGNNNCTG 1 cut(s) 122
CseI GACGC 1 cut(s) 128
CviAII CATG 2 cut(s) 133, 185
CviJI RGCY 6 cut(s) 18, 86, 93, 191, 195, 292
CviKI_1 RGCY 6 cut(s) 18, 86, 93, 191, 195, 292
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 332
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 2 cut(s) 136, 188
FaiI YATR 6 cut(s) 32, 102, 134, 186, 305, 347
FatI CATG 2 cut(s) 132, 184
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 3 cut(s) 36, 87, 162
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 1 cut(s) 195
HgaI GACGC 1 cut(s) 128
Hin1II CATG 2 cut(s) 136, 188
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HindIII AAGCTT 1 cut(s) 91
HinfI GANTC 4 cut(s) 21, 180, 258, 307
Hpy166II GTNNAC 2 cut(s) 7, 359
Hpy188I TCNGA 2 cut(s) 287, 312
Hpy188III TCNNGA 4 cut(s) 25, 36, 218, 297
Hpy8I GTNNAC 2 cut(s) 7, 359
HpyAV CCTTC 2 cut(s) 33, 303
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 4 cut(s) 116, 200, 227, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 342
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 2 cut(s) 136, 188
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 4 cut(s) 38, 177, 231, 261
Lsp1109I GCAGC 1 cut(s) 284
MaeI CTAG 3 cut(s) 36, 87, 162
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 106
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MfeI CAATTG 1 cut(s) 365
MluCI AATT 4 cut(s) 72, 157, 228, 365
MlyI GAGTC 2 cut(s) 15, 189
MnlI CCTC 4 cut(s) 42, 61, 97, 248
MseI TTAA 1 cut(s) 173
MunI CAATTG 1 cut(s) 365
MwoI GCNNNNNNNGC 2 cut(s) 197, 342
NcoI CCATGG 1 cut(s) 184
NdeII GATC 1 cut(s) 27
NlaIII CATG 2 cut(s) 136, 188
NspI RCATGY 1 cut(s) 136
NspV TTCGAA 1 cut(s) 261
PciI ACATGT 1 cut(s) 132
PfeI GAWTC 2 cut(s) 258, 307
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 2 cut(s) 15, 188
PpsI GAGTC 2 cut(s) 15, 188
PscI ACATGT 1 cut(s) 132
PstI CTGCAG 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 27
SchI GAGTC 2 cut(s) 15, 189
SetI ASST 5 cut(s) 12, 53, 95, 108, 193
SfcI CTRYAG 2 cut(s) 249, 270
SfuI TTCGAA 1 cut(s) 261
Sse9I AATT 4 cut(s) 72, 157, 228, 365
SspMI CTAG 3 cut(s) 36, 87, 162
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 261
TasI AATT 4 cut(s) 72, 157, 228, 365
TfiI GAWTC 2 cut(s) 258, 307
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 320
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 1 cut(s) 157
XbaI TCTAGA 1 cut(s) 35
XceI RCATGY 1 cut(s) 136
XspI CTAG 3 cut(s) 36, 87, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.