Rw7G001760

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001096
Physical Location & Seq
Forward (+)
1432064 .. 1441477
9414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G001760.1

Sequence Viewer

Length: 1506 bp
ATGGCAAGAAGCTTGGGGTACAAGGTAAGTGTGGCAGAGGCTGACATGAACGTCACGAAATTTGCACAGCTTGTGAATTCTTGTGATGTGTTGATGGGAGTTCATGGAGCTGGCCTCACCAACATTCTGTTCCTTCCTGATAATGCAATCTTGATCCAAATACTTCCAATTGGAGGGTATGAATGGACTGCAAAGACAGCTTTTGGAAACCCTTCACAGGATATGAATCTCAGGTACATGGAGTATAAGATAAGCAATGAGGAGAGCACACTCATACAACAATACCCACTTAACCATGCAGTTTTTACTGACCCTCACTCTATTGCGAAACAGGGGTGGAAAGCATTCAAGTCAATCCTTATGGATAAGCAAAATCTGTACCAAATGGGTGTTGATCTCAAAATGCTAGCCCTCAGTGAGACAAAGATAGCAGAACCAATTTGCAGTGTTATGGAACCAAGATCTGAATTCTGCGAGATTGAGAATAAGGATGTTCGGGTCAATGGAAAAGTGTCCTCAGTGTATGTTGTTTCATCTCAAAGGGAGAATGTGATAGAAGCTGGGAATAACTCATGGAATATAAGACCTTATGCTCAAAAAGACGATGTAAAAGCAATAAGCCTCATTAGGAAATGGTCAGTGAAACAATACCATGACTTTGCTGATGTGATCATTCCACTCTATGTTACTTCTCGAAAATACAATGGAGAAGTTCAGTTCCTTATCACTGAGAATCGTATTAAGTGGATTCAAAAGTTCCAAGAAATACTAAAAGGACTTTCCAAGTATGAGCTTATTGACATTGACAAAGAATTAGAACAAGTCCATTGCTTTCCCAGCGTAACGGTTGGCCTGAAAACATCTCGCAAGGAAATGACCTTTGATCCTTTGAGATATTCATATTCTATGAAAGACTTCAGAGGGTTTCTAAGAACCACTTATTCATTAAAGAGAGCCAATGCAATCAAAATCAGAGATGGACAGCATCAACTAAAAAAGCCTCGGCTTCTCATCATATCAAGAAACAGAACAAGGTCTTTCACAAATACGGGCGAAATAACTCAGATGGCAAGAGACTTGGGGTACAAGGTAACTGTGGCGGAGGCTGACATGAATGTGTCAAATTTTGCAAATGTTGTGAATTCTTGTGATGTGATGATGGGAGTTCATGGAGCTGGTCTTTTGAACATGCTTTTCCTACCGGAAAATGCAATTTTTATCCAGATAATTCCAGTTGGAAAGTTCCAATGGATTTCGACAACATACTATGGAGGGCCAGCAAAGGATATGAATCTAAAGTATTTGGAATATAAGATAAGCAATGAAGAGAGCACACTGATACAGCAATACCCACTTGATCATGCAGTTTTTACTGACCCTATCTCAATTGGAAAACAAGGGTGGATGGTATTCAAGTCAATCTATCTGAACAAACAAAATGTAAAGCTTAATGTCACTAGGTTTAAACCCACGTTGTTAAAAGCCCTTGAGCTTTTGCAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

501

Amino Acids

57.28

Weight (kDa)

9.12

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 317 - 406 1.6e-11 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
AciI CCGC 1 cut(s) 1100
AclWI GGATC 2 cut(s) 148, 878
AcsI RAATTY 5 cut(s) 59, 76, 467, 1123, 1141
AcuI CTGAAG 1 cut(s) 901
AfaI GTAC 4 cut(s) 20, 236, 380, 1085
AfiI CCNNNNNNNGG 2 cut(s) 173, 217
AgsI TTSAA 4 cut(s) 349, 752, 1186, 1414
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 9 cut(s) 12, 70, 110, 200, 560, 793, 1175, 1447, 1492
AluI AGCT 9 cut(s) 12, 70, 110, 200, 560, 793, 1175, 1447, 1492
Alw21I GWGCWC 2 cut(s) 269, 1334
Alw26I GTCTC 2 cut(s) 413, 1068
AlwI GGATC 2 cut(s) 148, 878
AlwNI CAGNNNCTG 1 cut(s) 41
AoxI GGCC 3 cut(s) 112, 850, 1274
ApeKI GCWGC 1 cut(s) 1498
ApoI RAATTY 5 cut(s) 59, 76, 467, 1123, 1141
Asp700I GAANNNNTTC 3 cut(s) 211, 344, 914
AspS9I GGNCC 1 cut(s) 1274
AsuHPI GGTGA 1 cut(s) 109
AsuNHI GCTAGC 1 cut(s) 406
Bbv12I GWGCWC 2 cut(s) 269, 1334
BccI CCATC 5 cut(s) 88, 971, 1060, 1153, 1399
BclI TGATCA 2 cut(s) 669, 1357
BcoDI GTCTC 2 cut(s) 413, 1068
BfaI CTAG 2 cut(s) 407, 1458
BglII AGATCT 1 cut(s) 461
BisI GCNGC 1 cut(s) 1499
BlsI GCNGC 1 cut(s) 1500
BmgT120I GGNCC 1 cut(s) 1274
BmiI GGNNCC 1 cut(s) 456
BmsI GCATC 1 cut(s) 994
BmtI GCTAGC 1 cut(s) 410
BplI GAGNNNNNCTC 2 cut(s) 99, 131
BsaBI GATNNNNATC 2 cut(s) 225, 1290
BsaJI CCNNGG 1 cut(s) 1001
BsaWI WCCGGW 1 cut(s) 1201
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 217
Bse1I ACTGG 1 cut(s) 1232
Bse3DI GCAATG 3 cut(s) 262, 826, 1327
Bse8I GATNNNNATC 2 cut(s) 225, 1290
BseDI CCNNGG 1 cut(s) 1001
BseGI GGATG 2 cut(s) 496, 1410
BseJI GATNNNNATC 2 cut(s) 225, 1290
BseLI CCNNNNNNNGG 2 cut(s) 173, 217
BseMI GCAATG 3 cut(s) 262, 826, 1327
BseMII CTCAG 5 cut(s) 244, 427, 531, 720, 1076
BseNI ACTGG 1 cut(s) 1232
BseRI GAGGAG 1 cut(s) 275
BseYI CCCAGC 2 cut(s) 560, 836
BshFI GGCC 3 cut(s) 114, 852, 1276
BsiHKAI GWGCWC 2 cut(s) 269, 1334
BsiSI CCGG 1 cut(s) 1202
BslI CCNNNNNNNGG 2 cut(s) 173, 217
BsmAI GTCTC 2 cut(s) 413, 1068
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 3 cut(s) 114, 852, 1276
Bsp1286I GDGCHC 2 cut(s) 269, 1334
Bsp143I GATC 6 cut(s) 153, 394, 461, 669, 883, 1357
BspACI CCGC 1 cut(s) 1100
BspANI GGCC 3 cut(s) 114, 852, 1276
BspCNI CTCAG 5 cut(s) 243, 426, 530, 721, 1075
BspLI GGNNCC 1 cut(s) 456
BspOI GCTAGC 1 cut(s) 410
BspPI GGATC 2 cut(s) 148, 878
BsrDI GCAATG 3 cut(s) 262, 826, 1327
BsrI ACTGG 1 cut(s) 1232
BssECI CCNNGG 1 cut(s) 1001
BssMI GATC 6 cut(s) 153, 394, 461, 669, 883, 1357
Bst4CI ACNGT 2 cut(s) 847, 1096
Bst6I CTCTTC 1 cut(s) 1320
BstC8I GCNNGC 3 cut(s) 112, 408, 1278
BstDEI CTNAG 6 cut(s) 230, 413, 517, 729, 929, 1062
BstF5I GGATG 2 cut(s) 496, 1410
BstKTI GATC 6 cut(s) 156, 397, 464, 672, 886, 1360
BstMAI GTCTC 2 cut(s) 413, 1068
BstMBI GATC 6 cut(s) 153, 394, 461, 669, 883, 1357
BstMWI GCNNNNNNNGC 3 cut(s) 197, 837, 1498
BstNSI RCATGY 1 cut(s) 1192
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BsuRI GGCC 3 cut(s) 114, 852, 1276
BtsCI GGATG 2 cut(s) 496, 1410
BtsI GCAGTG 1 cut(s) 451
BtsIMutI CAGTG 6 cut(s) 421, 451, 525, 645, 726, 1334
Cac8I GCNNGC 3 cut(s) 112, 408, 1278
CaiI CAGNNNCTG 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 1274
Csp6I GTAC 4 cut(s) 19, 235, 379, 1084
CviQI GTAC 4 cut(s) 19, 235, 379, 1084
DdeI CTNAG 6 cut(s) 230, 413, 517, 729, 929, 1062
DpnI GATC 6 cut(s) 155, 396, 463, 671, 885, 1359
DpnII GATC 6 cut(s) 153, 394, 461, 669, 883, 1357
DraI TTTAAA 1 cut(s) 1465
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 1320
EarI CTCTTC 1 cut(s) 1320
EciI GGCGGA 1 cut(s) 1115
Eco57I CTGAAG 1 cut(s) 901
EcoRI GAATTC 3 cut(s) 76, 467, 1141
FalI AAGNNNNNCTT 2 cut(s) 922, 954
FbaI TGATCA 2 cut(s) 669, 1357
Fnu4HI GCNGC 1 cut(s) 1499
FokI GGATG 2 cut(s) 503, 1417
Fsp4HI GCNGC 1 cut(s) 1499
FspBI CTAG 2 cut(s) 407, 1458
GluI GCNGC 1 cut(s) 1499
GsaI CCCAGC 2 cut(s) 564, 840
HaeIII GGCC 3 cut(s) 114, 852, 1276
HapII CCGG 1 cut(s) 1202
HindIII AAGCTT 2 cut(s) 10, 1445
HinfI GANTC 4 cut(s) 226, 733, 748, 1291
HpaII CCGG 1 cut(s) 1202
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 5 cut(s) 466, 920, 974, 1065, 1428
Hpy188III TCNNGA 6 cut(s) 55, 137, 151, 693, 1020, 1222
HpyAV CCTTC 2 cut(s) 143, 222
HpyCH4III ACNGT 2 cut(s) 847, 1096
HpyCH4IV ACGT 2 cut(s) 51, 1472
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 837, 1498
HpyF3I CTNAG 6 cut(s) 230, 413, 517, 729, 929, 1062
HpySE526I ACGT 2 cut(s) 51, 1472
Ksp22I TGATCA 2 cut(s) 669, 1357
Kzo9I GATC 6 cut(s) 153, 394, 461, 669, 883, 1357
LmnI GCTCC 2 cut(s) 107, 1172
LweI GCATC 1 cut(s) 994
MaeI CTAG 2 cut(s) 407, 1458
MaeII ACGT 2 cut(s) 51, 1472
MaeIII GTNAC 5 cut(s) 52, 685, 841, 1090, 1453
MalI GATC 6 cut(s) 155, 396, 463, 671, 885, 1359
MboI GATC 6 cut(s) 153, 394, 461, 669, 883, 1357
MboII GAAGA 1 cut(s) 1337
MfeI CAATTG 2 cut(s) 168, 1386
MflI RGATCY 1 cut(s) 461
MhlI GDGCHC 2 cut(s) 269, 1334
MmeI TCCRAC 1 cut(s) 1216
MroXI GAANNNNTTC 3 cut(s) 211, 344, 914
MseI TTAA 6 cut(s) 291, 741, 947, 1449, 1464, 1478
MslI CAYNNNNRTG 1 cut(s) 1115
MspI CCGG 1 cut(s) 1202
MssI GTTTAAAC 1 cut(s) 1465
MunI CAATTG 2 cut(s) 168, 1386
Mva1269I GAATGC 1 cut(s) 344
MwoI GCNNNNNNNGC 3 cut(s) 197, 837, 1498
NdeII GATC 6 cut(s) 153, 394, 461, 669, 883, 1357
NheI GCTAGC 1 cut(s) 406
NlaIV GGNNCC 1 cut(s) 456
NmeAIII GCCGAG 1 cut(s) 982
NmuCI GTSAC 2 cut(s) 52, 1453
NspI RCATGY 1 cut(s) 1192
PctI GAATGC 1 cut(s) 344
PdmI GAANNNNTTC 3 cut(s) 211, 344, 914
PfeI GAWTC 4 cut(s) 226, 733, 748, 1291
PkrI GCNGC 1 cut(s) 1500
PmeI GTTTAAAC 1 cut(s) 1465
PspFI CCCAGC 2 cut(s) 560, 836
PspN4I GGNNCC 1 cut(s) 456
PspPI GGNCC 1 cut(s) 1274
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 461
RsaI GTAC 4 cut(s) 20, 236, 380, 1085
RsaNI GTAC 4 cut(s) 19, 235, 379, 1084
RseI CAYNNNNRTG 1 cut(s) 1115
SaqAI TTAA 6 cut(s) 291, 741, 947, 1449, 1464, 1478
SatI GCNGC 1 cut(s) 1499
Sau3AI GATC 6 cut(s) 153, 394, 461, 669, 883, 1357
Sau96I GGNCC 1 cut(s) 1274
SduI GDGCHC 2 cut(s) 269, 1334
SfaNI GCATC 1 cut(s) 994
SmiMI CAYNNNNRTG 1 cut(s) 1115
SmlI CTYRAG 1 cut(s) 1487
SmoI CTYRAG 1 cut(s) 1487
SsiI CCGC 1 cut(s) 1100
SspMI CTAG 2 cut(s) 407, 1458
TaaI ACNGT 2 cut(s) 847, 1096
TaiI ACGT 2 cut(s) 54, 1475
TaqI TCGA 2 cut(s) 694, 1256
TfiI GAWTC 4 cut(s) 226, 733, 748, 1291
Tru1I TTAA 6 cut(s) 291, 741, 947, 1449, 1464, 1478
Tru9I TTAA 6 cut(s) 291, 741, 947, 1449, 1464, 1478
TscAI CASTG 6 cut(s) 421, 451, 525, 645, 733, 1341
TseFI GTSAC 2 cut(s) 52, 1453
TseI GCWGC 1 cut(s) 1498
Tsp45I GTSAC 2 cut(s) 52, 1453
TspRI CASTG 6 cut(s) 421, 451, 525, 645, 733, 1341
XapI RAATTY 5 cut(s) 59, 76, 467, 1123, 1141
XceI RCATGY 1 cut(s) 1192
XmnI GAANNNNTTC 3 cut(s) 211, 344, 914
XspI CTAG 2 cut(s) 407, 1458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.