Rh7BG021400

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001096
Physical Location & Seq
Forward (+)
1540830 .. 1542566
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG021400.1

Sequence Viewer

Length: 1416 bp
ATGAAGTACGATTCAGTGATTTCCAGAAGCATTCATCGGCTTGAGCAGAAGAGACTAAGATATGGAGCATTTCCTTGTTTCTTCCTGATAGCATTATGCTTTCGCACAGTGCTCGAGCATGGTCTGATTCGACCAGCTTTGAACTTGCAGCTGTCAGTAATCAAAGGTAAACTTGACTGGGAGATGGGAATCGAAGAGGTTAAAGATGTCAGTCTTCAAGTAGGAGACTTTGGTCTACAGGAAAATGAGAGACATGAACCAGATGCAGAGACAAATATTGCAGAAGTTGTGACAAAGAATTTGGAGCCGATTTGCAATGTGAAGGGACGGAGAAATGAGTTTTGCGAGATCAACAAGGATGTTCGGGTGGATGGGAAGTCGGCTTCAGTGTTTATTGTTTCATCTGAAATGGATCTGGGAAATGGGAATGGCTCCTGGACAATAAGACCATATGCTCGAAAAGAAGACAAAAGGGCAATGAGGGATACACGAAAATGGTCAGTGCAACAAGTAACTAGTTTCCAGGAAATGCCTCAATGTACACGAAATCACACTGTTCCAGCCATCTTGTTTTCAACTGGAGGATATACAGGAAACCATTTCCATGAGTTTGCTGATGTGGTTATTCCGCTCTATATTAATTCTCAAAAATATGATGGAGAAGTTCAATTTCTTATCACCGACAAACGATCTTGGTGGATTACAAAGTACAAAGCAGTACTACAAGGACTATCCAAGTATGAGGCTATGAACATTGATGAAGATGTAGTCCATTGCTTCCCAAGCGCAACAGTTGGCCTTAAACGACATCCCAAGGATCTGACCTTTGATCCTTCACTATATTCCTATTCTATGAAAGACTTCAGAGATTTCCTAAGAAACACATATTCCTTGAACAAAGCTAATGCAATCAGAATCCGAGATGGTCAACGTAAAAAACCCCGACTCCTGATCATATCAAGAAGGAGAACGAGGTCTTTCACAAATACAGAGGAAATTACTAAGATGGCTAGAAGCTTGGGATATGAGGTAACTGTTGCAGAGGCTGACAAGAACATGTCAAAAATTGCAGAAGTTGTGAATTCTTGTGATGTGTTAATGGGAGTCCATGGAGCTGGCCTAACAAACATTCTTTTCCTTCCTGAAAATGCAATTTTCATTCAAATACTTCCCGTAGGGGGATTCGAATGGATTGCAGCAAACTACTTCCGAGAGCCTTCAAGAGATATGAATCTGAAGTATTTGGAATACAAGATAAGCAAGGAGGAGAGCATACTGGAAAGTGAACCCCAATTGAATAAAAAAAAAGGATGGGAAGAGTTCAAGTCAAACTTTCTGAAAAGACAGAATGTAAAGCTTGATGTCGATAGGTTTAGGTCGACTTTGTTAGAAGCCCTGGAGCTTCTGCATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

471

Amino Acids

54.43

Weight (kDa)

8.83

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 279 - 386 3.7e-14 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 631
AccI GTMKAC 2 cut(s) 235, 1379
AciI CCGC 1 cut(s) 629
AclWI GGATC 3 cut(s) 420, 824, 825
AcsI RAATTY 2 cut(s) 298, 1081
AcuI CTGAAG 3 cut(s) 369, 847, 1256
AfaI GTAC 4 cut(s) 8, 541, 710, 720
AfiI CCNNNNNNNGG 1 cut(s) 1178
AflIII ACRYGT 1 cut(s) 1056
AgsI TTSAA 9 cut(s) 142, 218, 576, 668, 895, 1163, 1221, 1297, 1324
AhlI ACTAGT 1 cut(s) 515
AjnI CCWGG 3 cut(s) 434, 522, 1395
AluBI AGCT 7 cut(s) 137, 151, 902, 1017, 1115, 1357, 1402
AluI AGCT 7 cut(s) 137, 151, 902, 1017, 1115, 1357, 1402
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 4 cut(s) 46, 219, 244, 263
AlwI GGATC 3 cut(s) 420, 824, 825
AlwNI CAGNNNCTG 1 cut(s) 1046
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 2 cut(s) 796, 1117
ApeKI GCWGC 2 cut(s) 148, 1196
ApoI RAATTY 2 cut(s) 298, 1081
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
AseI ATTAAT 1 cut(s) 639
Asp700I GAANNNNTTC 1 cut(s) 860
AspLEI GCGC 1 cut(s) 788
AsuHPI GGTGA 1 cut(s) 670
AsuII TTCGAA 1 cut(s) 1185
AvaI CYCGRG 1 cut(s) 113
BbsI GAAGAC 2 cut(s) 206, 471
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 160, 1208
BccI CCATC 7 cut(s) 178, 365, 572, 650, 917, 1000, 1305
BcgI CGANNNNNNTGC 4 cut(s) 94, 128, 1175, 1209
BciT130I CCWGG 3 cut(s) 436, 524, 1397
BciVI GTATCC 1 cut(s) 478
BclI TGATCA 1 cut(s) 951
BcoDI GTCTC 4 cut(s) 46, 219, 244, 263
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 2 cut(s) 516, 1011
BfmI CTRYAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 478
BisI GCNGC 2 cut(s) 149, 1197
BlsI GCNGC 2 cut(s) 150, 1198
BmcAI AGTACT 1 cut(s) 720
Bme1390I CCNGG 3 cut(s) 436, 524, 1397
BmeT110I CYCGRG 1 cut(s) 113
BmiI GGNNCC 2 cut(s) 306, 433
BmrFI CCNGG 3 cut(s) 436, 524, 1397
BmrI ACTGGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 187
BoxI GACNNNNGTC 1 cut(s) 231
BpiI GAAGAC 2 cut(s) 206, 471
BpmI CTGGAG 1 cut(s) 600
Bpu14I TTCGAA 1 cut(s) 1185
BpuEI CTTGAG 1 cut(s) 62
BsaBI GATNNNNATC 2 cut(s) 188, 1230
BsaJI CCNNGG 3 cut(s) 813, 1108, 1395
BsaXI ACNNNNNCTCC 2 cut(s) 930, 960
Bsc4I CCNNNNNNNGG 1 cut(s) 1178
Bse1I ACTGG 3 cut(s) 182, 583, 1281
Bse3DI GCAATG 3 cut(s) 322, 483, 772
Bse8I GATNNNNATC 2 cut(s) 188, 1230
BseBI CCWGG 3 cut(s) 436, 524, 1397
BseDI CCNNGG 3 cut(s) 813, 1108, 1395
BseGI GGATG 4 cut(s) 364, 376, 808, 1316
BseJI GATNNNNATC 2 cut(s) 188, 1230
BseLI CCNNNNNNNGG 1 cut(s) 1178
BseMI GCAATG 3 cut(s) 322, 483, 772
BseNI ACTGG 3 cut(s) 182, 583, 1281
BseRI GAGGAG 1 cut(s) 1280
BseXI GCAGC 2 cut(s) 160, 1208
BshFI GGCC 2 cut(s) 798, 1119
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 1178
BsmAI GTCTC 4 cut(s) 46, 219, 244, 263
BsmFI GGGAC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 30
BsnI GGCC 2 cut(s) 798, 1119
BsoBI CYCGRG 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 1185
Bsp1286I GDGCHC 1 cut(s) 114
Bsp1407I TGTACA 1 cut(s) 539
Bsp143I GATC 6 cut(s) 348, 412, 689, 817, 829, 951
Bsp19I CCATGG 1 cut(s) 1108
BspACI CCGC 1 cut(s) 629
BspANI GGCC 2 cut(s) 798, 1119
BspLI GGNNCC 2 cut(s) 306, 433
BspPI GGATC 3 cut(s) 420, 824, 825
BspT104I TTCGAA 1 cut(s) 1185
BsrBI CCGCTC 1 cut(s) 631
BsrDI GCAATG 3 cut(s) 322, 483, 772
BsrGI TGTACA 1 cut(s) 539
BsrI ACTGG 3 cut(s) 182, 583, 1281
BssECI CCNNGG 3 cut(s) 813, 1108, 1395
BssMI GATC 6 cut(s) 348, 412, 689, 817, 829, 951
BssT1I CCWWGG 2 cut(s) 813, 1108
Bst2UI CCWGG 3 cut(s) 436, 524, 1397
Bst4CI ACNGT 4 cut(s) 109, 556, 793, 1036
Bst6I CTCTTC 3 cut(s) 44, 189, 1311
BstAUI TGTACA 1 cut(s) 539
BstBI TTCGAA 1 cut(s) 1185
BstC8I GCNNGC 1 cut(s) 1117
BstDEI CTNAG 3 cut(s) 56, 875, 1002
BstDSI CCRYGG 1 cut(s) 1108
BstF5I GGATG 4 cut(s) 364, 376, 808, 1316
BstHHI GCGC 1 cut(s) 788
BstKTI GATC 6 cut(s) 351, 415, 692, 820, 832, 954
BstMAI GTCTC 4 cut(s) 46, 219, 244, 263
BstMBI GATC 6 cut(s) 348, 412, 689, 817, 829, 951
BstMWI GCNNNNNNNGC 1 cut(s) 783
BstNI CCWGG 3 cut(s) 436, 524, 1397
BstNSI RCATGY 1 cut(s) 1060
BstPAI GACNNNNGTC 1 cut(s) 231
BstSCI CCNGG 3 cut(s) 434, 522, 1395
BstSFI CTRYAG 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 160, 1208
BstV2I GAAGAC 2 cut(s) 206, 471
BstX2I RGATCY 2 cut(s) 412, 817
BstXI CCANNNNNNTGG 1 cut(s) 1115
BstYI RGATCY 2 cut(s) 412, 817
BsuI GTATCC 1 cut(s) 478
BsuRI GGCC 2 cut(s) 798, 1119
BtgI CCRYGG 1 cut(s) 1108
BtsCI GGATG 4 cut(s) 364, 376, 808, 1316
BtsIMutI CAGTG 5 cut(s) 21, 114, 393, 507, 552
Cac8I GCNNGC 1 cut(s) 1117
CaiI CAGNNNCTG 1 cut(s) 1046
CfoI GCGC 1 cut(s) 788
Csp6I GTAC 4 cut(s) 7, 540, 709, 719
CviAII CATG 5 cut(s) 119, 254, 605, 1057, 1109
CviQI GTAC 4 cut(s) 7, 540, 709, 719
DdeI CTNAG 3 cut(s) 56, 875, 1002
DpnI GATC 6 cut(s) 350, 414, 691, 819, 831, 953
DpnII GATC 6 cut(s) 348, 412, 689, 817, 829, 951
Eam1104I CTCTTC 3 cut(s) 44, 189, 1311
EarI CTCTTC 3 cut(s) 44, 189, 1311
Eco130I CCWWGG 2 cut(s) 813, 1108
Eco57I CTGAAG 3 cut(s) 369, 847, 1256
Eco88I CYCGRG 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 1081
EcoRII CCWGG 3 cut(s) 434, 522, 1395
EcoT14I CCWWGG 2 cut(s) 813, 1108
ErhI CCWWGG 2 cut(s) 813, 1108
FaeI CATG 5 cut(s) 122, 257, 608, 1060, 1112
FalI AAGNNNNNCTT 4 cut(s) 156, 188, 1316, 1348
FaqI GGGAC 1 cut(s) 339
FatI CATG 5 cut(s) 118, 253, 604, 1056, 1108
FauNDI CATATG 1 cut(s) 451
FbaI TGATCA 1 cut(s) 951
FblI GTMKAC 2 cut(s) 235, 1379
Fnu4HI GCNGC 2 cut(s) 149, 1197
FokI GGATG 4 cut(s) 371, 383, 795, 1323
Fsp4HI GCNGC 2 cut(s) 149, 1197
FspBI CTAG 2 cut(s) 516, 1011
GlaI GCGC 1 cut(s) 787
GluI GCNGC 2 cut(s) 149, 1197
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 2 cut(s) 798, 1119
HhaI GCGC 1 cut(s) 788
Hin1II CATG 5 cut(s) 122, 257, 608, 1060, 1112
Hin6I GCGC 1 cut(s) 786
HinP1I GCGC 1 cut(s) 786
HincII GTYRAC 2 cut(s) 929, 1380
HindII GTYRAC 2 cut(s) 929, 1380
HindIII AAGCTT 2 cut(s) 1015, 1355
HinfI GANTC 8 cut(s) 11, 127, 189, 915, 945, 1104, 1182, 1231
HphI GGTGA 1 cut(s) 670
Hpy166II GTNNAC 6 cut(s) 170, 236, 542, 929, 1286, 1380
Hpy188I TCNGA 9 cut(s) 126, 406, 822, 866, 914, 920, 1211, 1236, 1338
Hpy188III TCNNGA 6 cut(s) 24, 85, 949, 960, 1142, 1221
Hpy8I GTNNAC 6 cut(s) 170, 236, 542, 929, 1286, 1380
HpyAV CCTTC 5 cut(s) 316, 843, 957, 1148, 1227
HpyCH4III ACNGT 4 cut(s) 109, 556, 793, 1036
HpyCH4IV ACGT 1 cut(s) 931
HpyF10VI GCNNNNNNNGC 1 cut(s) 783
HpyF3I CTNAG 3 cut(s) 56, 875, 1002
HpySE526I ACGT 1 cut(s) 931
Hsp92II CATG 5 cut(s) 122, 257, 608, 1060, 1112
HspAI GCGC 1 cut(s) 786
Ksp22I TGATCA 1 cut(s) 951
Kzo9I GATC 6 cut(s) 348, 412, 689, 817, 829, 951
LmnI GCTCC 5 cut(s) 65, 304, 437, 1112, 1399
Lsp1109I GCAGC 2 cut(s) 160, 1208
LweI GCATC 1 cut(s) 253
MaeI CTAG 2 cut(s) 516, 1011
MaeII ACGT 1 cut(s) 931
MaeIII GTNAC 3 cut(s) 289, 511, 1030
MalI GATC 6 cut(s) 350, 414, 691, 819, 831, 953
MbiI CCGCTC 1 cut(s) 631
MboI GATC 6 cut(s) 348, 412, 689, 817, 829, 951
MboII GAAGA 7 cut(s) 61, 73, 206, 206, 476, 773, 1328
MfeI CAATTG 1 cut(s) 1292
MflI RGATCY 2 cut(s) 412, 817
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 8 cut(s) 298, 640, 668, 996, 1065, 1081, 1152, 1292
MlyI GAGTC 2 cut(s) 939, 1113
MroXI GAANNNNTTC 1 cut(s) 860
MseI TTAA 4 cut(s) 201, 639, 801, 1097
MslI CAYNNNNRTG 2 cut(s) 493, 603
MspA1I CMGCKG 1 cut(s) 151
MspR9I CCNGG 3 cut(s) 436, 524, 1397
MunI CAATTG 1 cut(s) 1292
Mva1269I GAATGC 1 cut(s) 30
MvaI CCWGG 3 cut(s) 436, 524, 1397
MwoI GCNNNNNNNGC 1 cut(s) 783
NcoI CCATGG 1 cut(s) 1108
NdeI CATATG 1 cut(s) 451
NdeII GATC 6 cut(s) 348, 412, 689, 817, 829, 951
NlaIII CATG 5 cut(s) 122, 257, 608, 1060, 1112
NlaIV GGNNCC 2 cut(s) 306, 433
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 1 cut(s) 1060
NspV TTCGAA 1 cut(s) 1185
PaeR7I CTCGAG 1 cut(s) 113
PciI ACATGT 1 cut(s) 1056
PctI GAATGC 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 860
PfeI GAWTC 6 cut(s) 11, 127, 189, 915, 1182, 1231
PfoI TCCNGGA 2 cut(s) 434, 522
PkrI GCNGC 2 cut(s) 150, 1198
PleI GAGTC 2 cut(s) 939, 1112
PpsI GAGTC 2 cut(s) 939, 1112
PscI ACATGT 1 cut(s) 1056
PshAI GACNNNNGTC 1 cut(s) 231
PshBI ATTAAT 1 cut(s) 639
Psp6I CCWGG 3 cut(s) 434, 522, 1395
PspGI CCWGG 3 cut(s) 434, 522, 1395
PspN4I GGNNCC 2 cut(s) 306, 433
PspXI VCTCGAGB 1 cut(s) 113
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 2 cut(s) 412, 817
PvuII CAGCTG 1 cut(s) 151
RsaI GTAC 4 cut(s) 8, 541, 710, 720
RsaNI GTAC 4 cut(s) 7, 540, 709, 719
RseI CAYNNNNRTG 2 cut(s) 493, 603
SalI GTCGAC 1 cut(s) 1378
SaqAI TTAA 4 cut(s) 201, 639, 801, 1097
SatI GCNGC 2 cut(s) 149, 1197
Sau3AI GATC 6 cut(s) 348, 412, 689, 817, 829, 951
ScaI AGTACT 1 cut(s) 720
SchI GAGTC 2 cut(s) 939, 1113
ScrFI CCNGG 3 cut(s) 436, 524, 1397
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 236
Sfr274I CTCGAG 1 cut(s) 113
SfuI TTCGAA 1 cut(s) 1185
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 2 cut(s) 493, 603
SmlI CTYRAG 2 cut(s) 41, 113
SmoI CTYRAG 2 cut(s) 41, 113
SpeI ACTAGT 1 cut(s) 515
Sse9I AATT 8 cut(s) 298, 640, 668, 996, 1065, 1081, 1152, 1292
SsiI CCGC 1 cut(s) 629
SspI AATATT 1 cut(s) 277
SspMI CTAG 2 cut(s) 516, 1011
StyD4I CCNGG 3 cut(s) 434, 522, 1395
StyI CCWWGG 2 cut(s) 813, 1108
TaaI ACNGT 4 cut(s) 109, 556, 793, 1036
TaiI ACGT 1 cut(s) 934
TaqI TCGA 7 cut(s) 114, 130, 192, 457, 1185, 1365, 1379
TasI AATT 8 cut(s) 298, 640, 668, 996, 1065, 1081, 1152, 1292
TatI WGTACW 3 cut(s) 539, 708, 718
TfiI GAWTC 6 cut(s) 11, 127, 189, 915, 1182, 1231
Tru1I TTAA 4 cut(s) 201, 639, 801, 1097
Tru9I TTAA 4 cut(s) 201, 639, 801, 1097
TscAI CASTG 5 cut(s) 21, 114, 393, 507, 559
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 148, 1196
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 9 cut(s) 17, 23, 270, 390, 764, 774, 869, 1147, 1244
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 5 cut(s) 21, 114, 393, 507, 559
VspI ATTAAT 1 cut(s) 639
XapI RAATTY 2 cut(s) 298, 1081
XceI RCATGY 1 cut(s) 1060
XhoI CTCGAG 1 cut(s) 113
XmiI GTMKAC 2 cut(s) 235, 1379
XmnI GAANNNNTTC 1 cut(s) 860
XspI CTAG 2 cut(s) 516, 1011
ZrmI AGTACT 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.