FvH4_5g16880

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001096
Physical Location & Seq
Reverse (-)
9639609 .. 9642009
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16880.t1

Sequence Viewer

Length: 1599 bp
ATGATGTATGATTCAATACTTGCCAGAAGCTTCAGTCGGCATGAGCAGAAGAAACTAGGATATGGAGCCTTTCTTTGCTGCTTGTTCCTAGCATTGTGCTTCTGCACAGTGCTGAAGCCTAGTTTGAATCCTCTACCAGCTTTGAATTTGCAGCGATCACTTGGTGTCAGAAACAAGATACTGGCACTAATGGAGTCGAACAACGAATCGAACAGCTCTGAGCATGTAGTGATCACAACTAAAGTTATTGATCGCATCATAAAGAACGAAGAGTTCAAGAATGTGAGTCTTATTCATGAAGATGAAGTAGAAGATTCTAAACAAGAGCAGAAAGATGAAAGCATTGCGGAGAGTGTTACTACTAGTCCCATTTCGAGCAGCGGTGACGATGATGATCATGAGACAAAGATTGTTGAAGTTGTGACAAAGACGGCTAGTGTGGAGCGAATTATTTGCAATGTCAAGCAACCAAGAACTGAATATTGCGAGGTCAACGGTGATGCTCGGGTGGATGGAAAATCTTCCTCAGTTATTGTTGCTTCATCTCAACTGGAGATGTCATCAGAGGGCAATGGCTCCTGGACTATAAGAACTTATGCTCGAAAAGAAGATGCAACAGCAATGAGTCATGCTAGGAAATGGTTTGTGAAACAAGCAAGTACAGATGATCCGGAAACTCCTCAATGTAGTAGGAATCATAATGTTCCGGCCATTCTGTTTTCAAGTGGAGGATACACTGGAAACCATTTCCATGACTTCACTGATGTGGTGATTCCCCTCTTCATCACTTCACGAAAATACAAGGGTGAAGTTCAGTTTCTTGTCACAGATATACGACCATTTTGGATTGAGAAGTTCAAAGCAATACTAAAAGGATTGTCCAACTATCAGTTCATTGACATTGACAATGAGCAAGAAGTCCATTGCTTCCCAAGCATAACCGTTGGCCTCATACGACACGAAAAGGAGCTGAGCATCAATGATCCTTCAAAATATTCACATACCATGAAAGACTTCAGGGAGTTTTTGAGGGAAACTTATTCCTTGAAGAAATCTAATGCTATTAGAGTCAAAGATGGTCAACGCAAAAAGCCGCGGCTTCTGATCATCCCAAGGAAGAGAACAAGGTCTTTCACCAATACAGGAGAGATTATGAGAATGGCGAAACGCTTGGGGTACAAGGTAAGTGTGGCAGAAGGTATCTCAGACGTTGCGAAATTTGCACAACTTGTGAATGCTTGTGATGTGTTGATGGGAGTTCATGGAGCTGGCCTCACGAACATTCTTTTTCTCCCGGAAAATGCAGTCGTCATCCAAATACTTCCGGTTGGAGGATTTGAATGGCTTGCCATGACAGATTTCGGCGAGCCTTCGCAGGATATGAACCTCAAGTACTTGGAGTATAAGATAAGCAATGAGGAGAGCACATTGATACAGCAATACCCTCTTGACCATGCAGTTTTTACTGATCCCTACTCTATTGGAAAACAAGGGTGGGAAGCATTCAAGTCAATCTTTTTGGACAAGCAAAATGTAAAGCTCAATGTCGATAGGTTCAAACCCACTTTGTTAAAAGCCCTTGAGCTTCTTCACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

533

Amino Acids

60.28

Weight (kDa)

6.72

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 329 - 438 3.7e-13 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1096
AccIII TCCGGA 1 cut(s) 670
AciI CCGC 4 cut(s) 347, 381, 1094, 1096
AclWI GGATC 3 cut(s) 662, 977, 1463
AcoI YGGCCR 1 cut(s) 708
AcsI RAATTY 2 cut(s) 145, 1217
AcuI CTGAAG 3 cut(s) 16, 134, 1000
AdeI CACNNNGTG 1 cut(s) 164
AfaI GTAC 3 cut(s) 661, 1178, 1394
AfiI CCNNNNNNNGG 1 cut(s) 1331
AhlI ACTAGT 1 cut(s) 362
AjnI CCWGG 1 cut(s) 578
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
AleI CACNNNNGTG 1 cut(s) 764
AluBI AGCT 7 cut(s) 30, 140, 216, 970, 1268, 1540, 1585
AluI AGCT 7 cut(s) 30, 140, 216, 970, 1268, 1540, 1585
Alw21I GWGCWC 1 cut(s) 1427
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 3 cut(s) 662, 977, 1463
Ama87I CYCGRG 1 cut(s) 504
Aor13HI TCCGGA 1 cut(s) 670
AoxI GGCC 3 cut(s) 708, 946, 1270
ApeKI GCWGC 3 cut(s) 78, 151, 378
ApoI RAATTY 2 cut(s) 145, 1217
Asp700I GAANNNNTTC 2 cut(s) 520, 1013
AsuC2I CCSGG 1 cut(s) 1295
AsuHPI GGTGA 6 cut(s) 395, 509, 781, 818, 1126, 1583
AvaI CYCGRG 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 1427
BbvI GCAGC 3 cut(s) 65, 163, 390
BccI CCATC 3 cut(s) 506, 1070, 1246
BceAI ACGGC 1 cut(s) 447
BcgI CGANNNNNNTGC 2 cut(s) 435, 469
BciT130I CCWGG 1 cut(s) 580
BciVI GTATCC 1 cut(s) 725
BclI TGATCA 3 cut(s) 231, 394, 1104
BcnI CCSGG 1 cut(s) 1295
BcoDI GTCTC 1 cut(s) 395
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 6 cut(s) 56, 89, 120, 363, 435, 633
BfuI GTATCC 1 cut(s) 725
BisI GCNGC 5 cut(s) 79, 152, 379, 1094, 1097
BlpI GCTNAGC 1 cut(s) 971
BlsI GCNGC 5 cut(s) 80, 153, 380, 1095, 1098
BmcAI AGTACT 1 cut(s) 1394
Bme1390I CCNGG 2 cut(s) 580, 1295
BmeT110I CYCGRG 1 cut(s) 504
BmiI GGNNCC 2 cut(s) 67, 577
BmrFI CCNGG 2 cut(s) 580, 1295
BmsI GCATC 4 cut(s) 264, 490, 601, 984
BplI GAGNNNNNCTC 2 cut(s) 1257, 1289
BpmI CTGGAG 1 cut(s) 572
Bpu1102I GCTNAGC 1 cut(s) 971
BpuEI CTTGAG 1 cut(s) 1373
BpuMI CCSGG 1 cut(s) 1295
BsaBI GATNNNNATC 1 cut(s) 393
BsaJI CCNNGG 2 cut(s) 1094, 1112
BsaWI WCCGGW 2 cut(s) 670, 1324
Bsc4I CCNNNNNNNGG 1 cut(s) 1331
Bse1I ACTGG 4 cut(s) 186, 555, 742, 1594
Bse3DI GCAATG 6 cut(s) 342, 463, 577, 627, 922, 1420
Bse8I GATNNNNATC 1 cut(s) 393
BseAI TCCGGA 1 cut(s) 670
BseBI CCWGG 1 cut(s) 580
BseDI CCNNGG 2 cut(s) 1094, 1112
BseGI GGATG 3 cut(s) 517, 1107, 1311
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 1331
BseMI GCAATG 6 cut(s) 342, 463, 577, 627, 922, 1420
BseMII CTCAG 4 cut(s) 210, 540, 962, 1218
BseNI ACTGG 4 cut(s) 186, 555, 742, 1594
BseRI GAGGAG 2 cut(s) 669, 1433
BseXI GCAGC 3 cut(s) 65, 163, 390
BsgI GTGCAG 1 cut(s) 88
Bsh1236I CGCG 1 cut(s) 1096
BshFI GGCC 3 cut(s) 710, 948, 1272
BsiHKAI GWGCWC 1 cut(s) 1427
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 4 cut(s) 671, 707, 1295, 1325
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 1331
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 351
BsmI GAATGC 2 cut(s) 1240, 1502
BsnI GGCC 3 cut(s) 710, 948, 1272
BsoBI CYCGRG 1 cut(s) 504
Bsp1286I GDGCHC 1 cut(s) 1427
Bsp13I TCCGGA 1 cut(s) 670
Bsp143I GATC 8 cut(s) 155, 231, 250, 394, 667, 982, 1104, 1468
Bsp1720I GCTNAGC 1 cut(s) 971
BspACI CCGC 4 cut(s) 347, 381, 1094, 1096
BspANI GGCC 3 cut(s) 710, 948, 1272
BspCNI CTCAG 4 cut(s) 211, 539, 963, 1217
BspEI TCCGGA 1 cut(s) 670
BspFNI CGCG 1 cut(s) 1096
BspHI TCATGA 2 cut(s) 295, 397
BspLI GGNNCC 2 cut(s) 67, 577
BspPI GGATC 3 cut(s) 662, 977, 1463
BsrDI GCAATG 6 cut(s) 342, 463, 577, 627, 922, 1420
BsrI ACTGG 4 cut(s) 186, 555, 742, 1594
BssECI CCNNGG 2 cut(s) 1094, 1112
BssMI GATC 8 cut(s) 155, 231, 250, 394, 667, 982, 1104, 1468
BssT1I CCWWGG 1 cut(s) 1112
Bst2UI CCWGG 1 cut(s) 580
Bst4CI ACNGT 3 cut(s) 109, 497, 943
Bst6I CTCTTC 3 cut(s) 264, 785, 1112
BstC8I GCNNGC 3 cut(s) 1270, 1347, 1367
BstDEI CTNAG 4 cut(s) 219, 526, 971, 1204
BstDSI CCRYGG 1 cut(s) 1094
BstF5I GGATG 3 cut(s) 517, 1107, 1311
BstFNI CGCG 1 cut(s) 1096
BstKTI GATC 8 cut(s) 158, 234, 253, 397, 670, 985, 1107, 1471
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 8 cut(s) 155, 231, 250, 394, 667, 982, 1104, 1468
BstMWI GCNNNNNNNGC 2 cut(s) 933, 1220
BstNI CCWGG 1 cut(s) 580
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 578, 1293
BstUI CGCG 1 cut(s) 1096
BstV1I GCAGC 3 cut(s) 65, 163, 390
BsuI GTATCC 1 cut(s) 725
BsuRI GGCC 3 cut(s) 710, 948, 1272
BtgI CCRYGG 1 cut(s) 1094
BtsCI GGATG 3 cut(s) 517, 1107, 1311
BtsIMutI CAGTG 3 cut(s) 114, 735, 759
Cac8I GCNNGC 3 cut(s) 1270, 1347, 1367
CciI TCATGA 2 cut(s) 295, 397
Cfr42I CCGCGG 1 cut(s) 1097
Csp6I GTAC 3 cut(s) 660, 1177, 1393
CviQI GTAC 3 cut(s) 660, 1177, 1393
DdeI CTNAG 4 cut(s) 219, 526, 971, 1204
DpnI GATC 8 cut(s) 157, 233, 252, 396, 669, 984, 1106, 1470
DpnII GATC 8 cut(s) 155, 231, 250, 394, 667, 982, 1104, 1468
DraIII CACNNNGTG 1 cut(s) 164
EaeI YGGCCR 1 cut(s) 708
Eam1104I CTCTTC 3 cut(s) 264, 785, 1112
EarI CTCTTC 3 cut(s) 264, 785, 1112
Eco130I CCWWGG 1 cut(s) 1112
Eco57I CTGAAG 3 cut(s) 16, 134, 1000
Eco88I CYCGRG 1 cut(s) 504
EcoRII CCWGG 1 cut(s) 578
EcoT14I CCWWGG 1 cut(s) 1112
ErhI CCWWGG 1 cut(s) 1112
FalI AAGNNNNNCTT 2 cut(s) 1499, 1531
FaqI GGGAC 1 cut(s) 351
FbaI TGATCA 3 cut(s) 231, 394, 1104
Fnu4HI GCNGC 5 cut(s) 79, 152, 379, 1094, 1097
FokI GGATG 3 cut(s) 524, 1094, 1298
Fsp4HI GCNGC 5 cut(s) 79, 152, 379, 1094, 1097
FspBI CTAG 6 cut(s) 56, 89, 120, 363, 435, 633
GluI GCNGC 5 cut(s) 79, 152, 379, 1094, 1097
GsuI CTGGAG 1 cut(s) 572
HaeIII GGCC 3 cut(s) 710, 948, 1272
HapII CCGG 4 cut(s) 671, 707, 1295, 1325
HincII GTYRAC 2 cut(s) 493, 1082
HindII GTYRAC 2 cut(s) 493, 1082
HindIII AAGCTT 1 cut(s) 28
HpaII CCGG 4 cut(s) 671, 707, 1295, 1325
HphI GGTGA 6 cut(s) 395, 509, 781, 818, 1126, 1583
Hpy166II GTNNAC 2 cut(s) 493, 1082
Hpy188I TCNGA 5 cut(s) 170, 220, 565, 1104, 1207
Hpy188III TCNNGA 7 cut(s) 277, 296, 398, 671, 792, 1276, 1448
Hpy8I GTNNAC 2 cut(s) 493, 1082
HpyAV CCTTC 3 cut(s) 996, 1190, 1380
HpyCH4III ACNGT 3 cut(s) 109, 497, 943
HpyCH4IV ACGT 1 cut(s) 1209
HpyCH4V TGCA 7 cut(s) 105, 151, 456, 614, 1223, 1304, 1457
HpyF10VI GCNNNNNNNGC 2 cut(s) 933, 1220
HpyF3I CTNAG 4 cut(s) 219, 526, 971, 1204
HpySE526I ACGT 1 cut(s) 1209
Kpn2I TCCGGA 1 cut(s) 670
Ksp22I TGATCA 3 cut(s) 231, 394, 1104
KspI CCGCGG 1 cut(s) 1097
Kzo9I GATC 8 cut(s) 155, 231, 250, 394, 667, 982, 1104, 1468
LmnI GCTCC 5 cut(s) 65, 442, 581, 967, 1265
Lsp1109I GCAGC 3 cut(s) 65, 163, 390
LweI GCATC 4 cut(s) 264, 490, 601, 984
MaeI CTAG 6 cut(s) 56, 89, 120, 363, 435, 633
MaeII ACGT 1 cut(s) 1209
MaeIII GTNAC 4 cut(s) 355, 383, 421, 823
MalI GATC 8 cut(s) 157, 233, 252, 396, 669, 984, 1106, 1470
MboI GATC 8 cut(s) 155, 231, 250, 394, 667, 982, 1104, 1468
MhlI GDGCHC 1 cut(s) 1427
MluCI AATT 3 cut(s) 145, 447, 1217
MlyI GAGTC 4 cut(s) 203, 295, 634, 1077
MmeI TCCRAC 2 cut(s) 906, 1309
MroI TCCGGA 1 cut(s) 670
MroXI GAANNNNTTC 2 cut(s) 520, 1013
MseI TTAA 1 cut(s) 1571
MslI CAYNNNNRTG 3 cut(s) 300, 750, 764
MspA1I CMGCKG 2 cut(s) 381, 1096
MspI CCGG 4 cut(s) 671, 707, 1295, 1325
MspR9I CCNGG 2 cut(s) 580, 1295
Mva1269I GAATGC 2 cut(s) 1240, 1502
MvaI CCWGG 1 cut(s) 580
MvnI CGCG 1 cut(s) 1096
MwoI GCNNNNNNNGC 2 cut(s) 933, 1220
NciI CCSGG 1 cut(s) 1295
NdeII GATC 8 cut(s) 155, 231, 250, 394, 667, 982, 1104, 1468
NlaIV GGNNCC 2 cut(s) 67, 577
NmuCI GTSAC 3 cut(s) 383, 421, 823
NspI RCATGY 1 cut(s) 227
OliI CACNNNNGTG 1 cut(s) 764
PagI TCATGA 2 cut(s) 295, 397
PctI GAATGC 2 cut(s) 1240, 1502
PdmI GAANNNNTTC 2 cut(s) 520, 1013
PfeI GAWTC 6 cut(s) 11, 127, 206, 314, 694, 772
PfoI TCCNGGA 2 cut(s) 578, 1293
PkrI GCNGC 5 cut(s) 80, 153, 380, 1095, 1098
PleI GAGTC 4 cut(s) 202, 294, 633, 1076
PpsI GAGTC 4 cut(s) 202, 294, 633, 1076
Psp6I CCWGG 1 cut(s) 578
PspGI CCWGG 1 cut(s) 578
PspN4I GGNNCC 2 cut(s) 67, 577
PsrI GAACNNNNNNTAC 2 cut(s) 1376, 1408
RsaI GTAC 3 cut(s) 661, 1178, 1394
RsaNI GTAC 3 cut(s) 660, 1177, 1393
RseI CAYNNNNRTG 3 cut(s) 300, 750, 764
SacII CCGCGG 1 cut(s) 1097
SaqAI TTAA 1 cut(s) 1571
SatI GCNGC 5 cut(s) 79, 152, 379, 1094, 1097
Sau3AI GATC 8 cut(s) 155, 231, 250, 394, 667, 982, 1104, 1468
ScaI AGTACT 1 cut(s) 1394
SchI GAGTC 4 cut(s) 203, 295, 634, 1077
ScrFI CCNGG 2 cut(s) 580, 1295
SduI GDGCHC 1 cut(s) 1427
SfaNI GCATC 4 cut(s) 264, 490, 601, 984
Sfr303I CCGCGG 1 cut(s) 1097
SgrBI CCGCGG 1 cut(s) 1097
SmiMI CAYNNNNRTG 3 cut(s) 300, 750, 764
SmlI CTYRAG 2 cut(s) 1388, 1580
SmoI CTYRAG 2 cut(s) 1388, 1580
SpeI ACTAGT 1 cut(s) 362
Sse9I AATT 3 cut(s) 145, 447, 1217
SsiI CCGC 4 cut(s) 347, 381, 1094, 1096
SspI AATATT 2 cut(s) 482, 995
SspMI CTAG 6 cut(s) 56, 89, 120, 363, 435, 633
StyD4I CCNGG 2 cut(s) 578, 1293
StyI CCWWGG 1 cut(s) 1112
TaaI ACNGT 3 cut(s) 109, 497, 943
TaiI ACGT 1 cut(s) 1212
TaqI TCGA 5 cut(s) 197, 209, 374, 601, 1548
TasI AATT 3 cut(s) 145, 447, 1217
TatI WGTACW 2 cut(s) 659, 1392
TauI GCSGC 2 cut(s) 1096, 1099
TfiI GAWTC 6 cut(s) 11, 127, 206, 314, 694, 772
Tru1I TTAA 1 cut(s) 1571
Tru9I TTAA 1 cut(s) 1571
TscAI CASTG 3 cut(s) 114, 742, 766
TseFI GTSAC 3 cut(s) 383, 421, 823
TseI GCWGC 3 cut(s) 78, 151, 378
Tsp45I GTSAC 3 cut(s) 383, 421, 823
TspRI CASTG 3 cut(s) 114, 742, 766
XapI RAATTY 2 cut(s) 145, 1217
XceI RCATGY 1 cut(s) 227
XmnI GAANNNNTTC 2 cut(s) 520, 1013
XspI CTAG 6 cut(s) 56, 89, 120, 363, 435, 633
ZrmI AGTACT 1 cut(s) 1394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.