Rh7DG021600

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001096
Physical Location & Seq
Forward (+)
1735215 .. 1737018
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG021600.1

Sequence Viewer

Length: 1587 bp
ATGATGTACGATTCGATACTTGCCAGAAGCTTTAGTCGGCATGAGCAGAAGAAATTAGGATATGGAGCATTTCTTTGCTGCTTGTTGATAGCATTGTGCTTTTGCACAGTGCTGAAGCCCAGTTTGAATCCTCTACCACCTTTGAATTTGCAGCGATCACTTGGTGTCAGAAACAAGATACTGGCACTAATGGAGTCGAACAAGGAATCAAACAGCTCTGAGCATGTAATCAAAACTAAAGTTGATCGCATCATAAAGACTGAAGAGTTCAAAAATGCGAGTCTTATTCATGAAGATGAAGTAGAAGATTCTAAACAAGAGCAGAAAAATGAAAGCATTACAGACAGTGTTACTTCTAGTCCCATTTCAAGCAGCGGTGACGATGATGATCATGAAACAAAGATTGTTGAAGTTGTGACAAAGAGTGTGGAGCCAATTATTTGCAATGTCAAGCAACCAAGAACTGAATATTGCGAGGTCAATGGTGATGCTCGGGTTGATGGAAAATCCTCCTCAGTTATTGTTGCTTCATCTGAACTGGAGATGTCATCAGCTAGCAATAGCTCCTGGACTATAAGAACTTATGCTCGAAAAGAAGATCCAACAGCAATGAGTCACGCTCGGAAATGGTTTGTGAAACCAGCAAGTACTGATGACCAGGAATTTCCTCAATGTAGTCGGAATCATAATGTTCCAGCCATTTTGTTTTCGAGTGGAGGATACACCGGAAACCATTTCCATGATTTCACTGATGTGGTGATTCCTCTCTTCATAACTTCACGAAAATACAAGGGTGAAGTTCAGTTTCTTGTCACGGATATACGACCATTTTGGATTGAAAAGTTCAAAGCAGTACTAAAAGGATTGTCCAACTATCAGTTCATTGACATTGACAAAGAACAAGTAGTCCATTGCTTCCCAAGCATAACCGTTGGCCTCATACGACACGGAAAGGAGCTGAGCATCAATGATCCTTCAAAGTATTCTCTTTCTATGAAAGACTTCAGAAAGTTTTTGAGGACAACTTATTCCTTAAAGAAAGTTAATGCAATTAGAGTCAAGGATGGTCAACGCAAAAAGCCGCGGCTTCTGATCATCCCAAGGAAGAGAACGAGGTCTTTCACTAATACAGGAGAGATTATGAGAATGGCAAAACGCTTGGGGTACAAGGTAAGTGTGGCAGAAGCTAGCATGGACGTCGCAAAATTTGCAGAACTTGTAAATTCTTGTGATGTATTGATGGGAGTTCATGGAGCTGGCCTCACAAACATTCTTTTTCTTCCGGAAAATGCAGTCTTCATCCAAATACTTCCTGTTGGAGGGTTTGAATGGCTTGCGGCGACCGATTTTGGAGAGCCTTCACAGGATATGAATCTCAAGTACTTGGAGTATAAGATAAGCAATGAGGAGAGCACATTAATACAGCAATACCCACTAGACCATGCAGTTTTTACTGACCCCTACTCTATTGGAAAACAGGGGTGGGAAGCCTTCAAGTCAATCTTTTTGGATAAGCAAAATGTAAAACTCAATGTCAACAGGTTCAAACCCACTTTGTTAAAAGCCCTTGAGCTTCTGCATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

528

Amino Acids

59.79

Weight (kDa)

8.62

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 328 - 434 1.9e-13 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1200
AccII CGCG 1 cut(s) 1084
AccIII TCCGGA 1 cut(s) 1282
AciI CCGC 4 cut(s) 375, 1082, 1084, 1337
AclWI GGATC 2 cut(s) 593, 965
AcsI RAATTY 4 cut(s) 145, 662, 1205, 1222
AcuI CTGAAG 3 cut(s) 134, 282, 988
AcyI GRCGYC 1 cut(s) 1197
AdeI CACNNNGTG 1 cut(s) 164
AfaI GTAC 5 cut(s) 8, 649, 855, 1166, 1382
AfiI CCNNNNNNNGG 1 cut(s) 1319
AjnI CCWGG 2 cut(s) 566, 657
AjuI GAANNNNNNNTTGG 2 cut(s) 863, 895
AleI CACNNNNGTG 1 cut(s) 752
AloI GAACNNNNNNTCC 2 cut(s) 891, 923
AluBI AGCT 8 cut(s) 30, 216, 554, 564, 958, 1187, 1256, 1573
AluI AGCT 8 cut(s) 30, 216, 554, 564, 958, 1187, 1256, 1573
Alw21I GWGCWC 1 cut(s) 1415
AlwI GGATC 2 cut(s) 593, 965
Ama87I CYCGRG 1 cut(s) 492
Aor13HI TCCGGA 1 cut(s) 1282
AoxI GGCC 2 cut(s) 934, 1258
ApeKI GCWGC 3 cut(s) 78, 151, 372
ApoI RAATTY 4 cut(s) 145, 662, 1205, 1222
AseI ATTAAT 1 cut(s) 1418
Asp700I GAANNNNTTC 1 cut(s) 1001
AsuHPI GGTGA 4 cut(s) 389, 497, 769, 806
AsuNHI GCTAGC 2 cut(s) 554, 1187
AvaI CYCGRG 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 1288
Bbv12I GWGCWC 1 cut(s) 1415
BbvI GCAGC 3 cut(s) 65, 163, 384
BccI CCATC 3 cut(s) 494, 1058, 1234
BcgI CGANNNNNNTGC 2 cut(s) 1180, 1214
BciT130I CCWGG 2 cut(s) 568, 659
BciVI GTATCC 1 cut(s) 713
BclI TGATCA 2 cut(s) 388, 1092
BfaI CTAG 4 cut(s) 357, 555, 1188, 1436
BfuI GTATCC 1 cut(s) 713
BisI GCNGC 6 cut(s) 79, 152, 373, 1082, 1085, 1338
BlpI GCTNAGC 1 cut(s) 959
BlsI GCNGC 6 cut(s) 80, 153, 374, 1083, 1086, 1339
BmcAI AGTACT 3 cut(s) 649, 855, 1382
Bme1390I CCNGG 2 cut(s) 568, 659
BmeT110I CYCGRG 1 cut(s) 492
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 2 cut(s) 568, 659
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 3 cut(s) 258, 478, 972
BmtI GCTAGC 2 cut(s) 558, 1191
BmuI ACTGGG 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 1288
BplI GAGNNNNNCTC 4 cut(s) 604, 636, 1245, 1277
BpmI CTGGAG 1 cut(s) 560
Bpu1102I GCTNAGC 1 cut(s) 959
BpuEI CTTGAG 1 cut(s) 1361
BsaBI GATNNNNATC 2 cut(s) 387, 1371
BsaHI GRCGYC 1 cut(s) 1197
BsaJI CCNNGG 2 cut(s) 1082, 1100
BsaWI WCCGGW 2 cut(s) 725, 1282
Bsc4I CCNNNNNNNGG 1 cut(s) 1319
Bse1I ACTGG 3 cut(s) 120, 186, 543
Bse3DI GCAATG 4 cut(s) 451, 615, 910, 1408
Bse8I GATNNNNATC 2 cut(s) 387, 1371
BseAI TCCGGA 1 cut(s) 1282
BseBI CCWGG 2 cut(s) 568, 659
BseDI CCNNGG 2 cut(s) 1082, 1100
BseGI GGATG 3 cut(s) 1069, 1095, 1299
BseJI GATNNNNATC 2 cut(s) 387, 1371
BseLI CCNNNNNNNGG 1 cut(s) 1319
BseMI GCAATG 4 cut(s) 451, 615, 910, 1408
BseMII CTCAG 3 cut(s) 210, 528, 950
BseNI ACTGG 3 cut(s) 120, 186, 543
BseRI GAGGAG 2 cut(s) 502, 1421
BseXI GCAGC 3 cut(s) 65, 163, 384
Bsh1236I CGCG 1 cut(s) 1084
Bsh1285I CGRYCG 1 cut(s) 1344
BshFI GGCC 2 cut(s) 936, 1260
BsiEI CGRYCG 1 cut(s) 1344
BsiHKAI GWGCWC 1 cut(s) 1415
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 2 cut(s) 726, 1283
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 1319
BsmFI GGGAC 1 cut(s) 345
BsnI GGCC 2 cut(s) 936, 1260
BsoBI CYCGRG 1 cut(s) 492
Bsp1286I GDGCHC 1 cut(s) 1415
Bsp13I TCCGGA 1 cut(s) 1282
Bsp143I GATC 6 cut(s) 155, 244, 388, 598, 970, 1092
Bsp1720I GCTNAGC 1 cut(s) 959
BspACI CCGC 4 cut(s) 375, 1082, 1084, 1337
BspANI GGCC 2 cut(s) 936, 1260
BspCNI CTCAG 3 cut(s) 211, 527, 951
BspEI TCCGGA 1 cut(s) 1282
BspFNI CGCG 1 cut(s) 1084
BspHI TCATGA 2 cut(s) 289, 391
BspLI GGNNCC 1 cut(s) 432
BspOI GCTAGC 2 cut(s) 558, 1191
BspPI GGATC 2 cut(s) 593, 965
BsrDI GCAATG 4 cut(s) 451, 615, 910, 1408
BsrI ACTGG 3 cut(s) 120, 186, 543
BssECI CCNNGG 2 cut(s) 1082, 1100
BssMI GATC 6 cut(s) 155, 244, 388, 598, 970, 1092
BssNI GRCGYC 1 cut(s) 1197
BssT1I CCWWGG 1 cut(s) 1100
Bst2UI CCWGG 2 cut(s) 568, 659
Bst4CI ACNGT 3 cut(s) 109, 347, 931
Bst6I CTCTTC 3 cut(s) 258, 773, 1100
BstACI GRCGYC 1 cut(s) 1197
BstAPI GCANNNNNTGC 1 cut(s) 1208
BstC8I GCNNGC 4 cut(s) 556, 1189, 1258, 1335
BstDEI CTNAG 3 cut(s) 219, 514, 959
BstDSI CCRYGG 1 cut(s) 1082
BstENI CCTNNNNNAGG 1 cut(s) 1317
BstF5I GGATG 3 cut(s) 1069, 1095, 1299
BstFNI CGCG 1 cut(s) 1084
BstKTI GATC 6 cut(s) 158, 247, 391, 601, 973, 1095
BstMBI GATC 6 cut(s) 155, 244, 388, 598, 970, 1092
BstMCI CGRYCG 1 cut(s) 1344
BstMWI GCNNNNNNNGC 2 cut(s) 921, 1208
BstNI CCWGG 2 cut(s) 568, 659
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 566, 657
BstUI CGCG 1 cut(s) 1084
BstV1I GCAGC 3 cut(s) 65, 163, 384
BstV2I GAAGAC 1 cut(s) 1288
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BsuI GTATCC 1 cut(s) 713
BsuRI GGCC 2 cut(s) 936, 1260
BtgI CCRYGG 1 cut(s) 1082
BtsCI GGATG 3 cut(s) 1069, 1095, 1299
BtsIMutI CAGTG 3 cut(s) 114, 352, 747
Cac8I GCNNGC 4 cut(s) 556, 1189, 1258, 1335
CciI TCATGA 2 cut(s) 289, 391
Cfr42I CCGCGG 1 cut(s) 1085
Csp6I GTAC 5 cut(s) 7, 648, 854, 1165, 1381
CspCI CAANNNNNGTGG 2 cut(s) 408, 443
CviAII CATG 8 cut(s) 41, 224, 290, 392, 740, 1192, 1250, 1442
CviQI GTAC 5 cut(s) 7, 648, 854, 1165, 1381
DdeI CTNAG 3 cut(s) 219, 514, 959
DpnI GATC 6 cut(s) 157, 246, 390, 600, 972, 1094
DpnII GATC 6 cut(s) 155, 244, 388, 598, 970, 1092
DraIII CACNNNGTG 1 cut(s) 164
Eam1104I CTCTTC 3 cut(s) 258, 773, 1100
EarI CTCTTC 3 cut(s) 258, 773, 1100
Eco130I CCWWGG 1 cut(s) 1100
Eco57I CTGAAG 3 cut(s) 134, 282, 988
Eco88I CYCGRG 1 cut(s) 492
EcoNI CCTNNNNNAGG 1 cut(s) 1317
EcoRII CCWGG 2 cut(s) 566, 657
EcoT14I CCWWGG 1 cut(s) 1100
ErhI CCWWGG 1 cut(s) 1100
FaeI CATG 8 cut(s) 44, 227, 293, 395, 743, 1195, 1253, 1445
FalI AAGNNNNNCTT 2 cut(s) 1487, 1519
FaqI GGGAC 1 cut(s) 345
FatI CATG 8 cut(s) 40, 223, 289, 391, 739, 1191, 1249, 1441
FbaI TGATCA 2 cut(s) 388, 1092
Fnu4HI GCNGC 6 cut(s) 79, 152, 373, 1082, 1085, 1338
FokI GGATG 3 cut(s) 1076, 1082, 1286
Fsp4HI GCNGC 6 cut(s) 79, 152, 373, 1082, 1085, 1338
FspBI CTAG 4 cut(s) 357, 555, 1188, 1436
GluI GCNGC 6 cut(s) 79, 152, 373, 1082, 1085, 1338
GsuI CTGGAG 1 cut(s) 560
HaeIII GGCC 2 cut(s) 936, 1260
HapII CCGG 2 cut(s) 726, 1283
Hin1I GRCGYC 1 cut(s) 1197
Hin1II CATG 8 cut(s) 44, 227, 293, 395, 743, 1195, 1253, 1445
HincII GTYRAC 2 cut(s) 1070, 1537
HindII GTYRAC 2 cut(s) 1070, 1537
HindIII AAGCTT 1 cut(s) 28
HpaII CCGG 2 cut(s) 726, 1283
HphI GGTGA 4 cut(s) 389, 497, 769, 806
Hpy166II GTNNAC 2 cut(s) 1070, 1537
Hpy188I TCNGA 7 cut(s) 170, 220, 535, 624, 681, 1007, 1092
Hpy188III TCNNGA 4 cut(s) 290, 392, 780, 1283
Hpy8I GTNNAC 2 cut(s) 1070, 1537
Hpy99I CGWCG 1 cut(s) 1202
HpyAV CCTTC 3 cut(s) 984, 1368, 1501
HpyCH4III ACNGT 3 cut(s) 109, 347, 931
HpyCH4IV ACGT 1 cut(s) 1197
HpyCH4V TGCA 8 cut(s) 105, 151, 444, 1049, 1211, 1292, 1445, 1579
HpyF10VI GCNNNNNNNGC 2 cut(s) 921, 1208
HpyF3I CTNAG 3 cut(s) 219, 514, 959
HpySE526I ACGT 1 cut(s) 1197
Hsp92I GRCGYC 1 cut(s) 1197
Hsp92II CATG 8 cut(s) 44, 227, 293, 395, 743, 1195, 1253, 1445
Kpn2I TCCGGA 1 cut(s) 1282
Ksp22I TGATCA 2 cut(s) 388, 1092
KspI CCGCGG 1 cut(s) 1085
Kzo9I GATC 6 cut(s) 155, 244, 388, 598, 970, 1092
LmnI GCTCC 5 cut(s) 65, 430, 569, 955, 1253
Lsp1109I GCAGC 3 cut(s) 65, 163, 384
LweI GCATC 3 cut(s) 258, 478, 972
MaeI CTAG 4 cut(s) 357, 555, 1188, 1436
MaeII ACGT 1 cut(s) 1197
MaeIII GTNAC 5 cut(s) 349, 377, 415, 614, 811
MalI GATC 6 cut(s) 157, 246, 390, 600, 972, 1094
MboI GATC 6 cut(s) 155, 244, 388, 598, 970, 1092
MboII GAAGA 9 cut(s) 61, 275, 305, 317, 608, 760, 1117, 1271, 1288
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 1 cut(s) 1415
MluCI AATT 7 cut(s) 53, 145, 435, 662, 1050, 1205, 1222
MlyI GAGTC 4 cut(s) 203, 289, 622, 1065
MmeI TCCRAC 4 cut(s) 626, 659, 894, 1297
MroI TCCGGA 1 cut(s) 1282
MroXI GAANNNNTTC 1 cut(s) 1001
MseI TTAA 4 cut(s) 1034, 1044, 1418, 1559
MslI CAYNNNNRTG 3 cut(s) 294, 738, 752
MspA1I CMGCKG 2 cut(s) 375, 1084
MspI CCGG 2 cut(s) 726, 1283
MspR9I CCNGG 2 cut(s) 568, 659
MvaI CCWGG 2 cut(s) 568, 659
MvnI CGCG 1 cut(s) 1084
MwoI GCNNNNNNNGC 2 cut(s) 921, 1208
NdeII GATC 6 cut(s) 155, 244, 388, 598, 970, 1092
NheI GCTAGC 2 cut(s) 554, 1187
NlaIII CATG 8 cut(s) 44, 227, 293, 395, 743, 1195, 1253, 1445
NlaIV GGNNCC 1 cut(s) 432
NmuCI GTSAC 4 cut(s) 377, 415, 614, 811
NspI RCATGY 1 cut(s) 227
OliI CACNNNNGTG 1 cut(s) 752
PagI TCATGA 2 cut(s) 289, 391
PdmI GAANNNNTTC 1 cut(s) 1001
PfeI GAWTC 7 cut(s) 11, 127, 206, 308, 682, 760, 1372
PfoI TCCNGGA 1 cut(s) 566
PkrI GCNGC 6 cut(s) 80, 153, 374, 1083, 1086, 1339
PleI GAGTC 4 cut(s) 202, 288, 621, 1064
PpsI GAGTC 4 cut(s) 202, 288, 621, 1064
PshBI ATTAAT 1 cut(s) 1418
Psp6I CCWGG 2 cut(s) 566, 657
PspGI CCWGG 2 cut(s) 566, 657
PspN4I GGNNCC 1 cut(s) 432
PsuI RGATCY 1 cut(s) 598
RsaI GTAC 5 cut(s) 8, 649, 855, 1166, 1382
RsaNI GTAC 5 cut(s) 7, 648, 854, 1165, 1381
RseI CAYNNNNRTG 3 cut(s) 294, 738, 752
SacII CCGCGG 1 cut(s) 1085
SaqAI TTAA 4 cut(s) 1034, 1044, 1418, 1559
SatI GCNGC 6 cut(s) 79, 152, 373, 1082, 1085, 1338
Sau3AI GATC 6 cut(s) 155, 244, 388, 598, 970, 1092
ScaI AGTACT 3 cut(s) 649, 855, 1382
SchI GAGTC 4 cut(s) 203, 289, 622, 1065
ScrFI CCNGG 2 cut(s) 568, 659
SduI GDGCHC 1 cut(s) 1415
SfaNI GCATC 3 cut(s) 258, 478, 972
Sfr303I CCGCGG 1 cut(s) 1085
SgrBI CCGCGG 1 cut(s) 1085
SmiMI CAYNNNNRTG 3 cut(s) 294, 738, 752
SmlI CTYRAG 2 cut(s) 1376, 1568
SmoI CTYRAG 2 cut(s) 1376, 1568
Sse9I AATT 7 cut(s) 53, 145, 435, 662, 1050, 1205, 1222
SsiI CCGC 4 cut(s) 375, 1082, 1084, 1337
SspI AATATT 1 cut(s) 470
SspMI CTAG 4 cut(s) 357, 555, 1188, 1436
StyD4I CCNGG 2 cut(s) 566, 657
StyI CCWWGG 1 cut(s) 1100
TaaI ACNGT 3 cut(s) 109, 347, 931
TaiI ACGT 1 cut(s) 1200
TaqI TCGA 4 cut(s) 14, 197, 589, 710
TaqII GACCGA 1 cut(s) 1358
TasI AATT 7 cut(s) 53, 145, 435, 662, 1050, 1205, 1222
TatI WGTACW 3 cut(s) 647, 853, 1380
TauI GCSGC 3 cut(s) 1084, 1087, 1340
TfiI GAWTC 7 cut(s) 11, 127, 206, 308, 682, 760, 1372
Tru1I TTAA 4 cut(s) 1034, 1044, 1418, 1559
Tru9I TTAA 4 cut(s) 1034, 1044, 1418, 1559
TscAI CASTG 3 cut(s) 114, 352, 754
TseFI GTSAC 4 cut(s) 377, 415, 614, 811
TseI GCWGC 3 cut(s) 78, 151, 372
Tsp45I GTSAC 4 cut(s) 377, 415, 614, 811
TspGWI ACGGA 2 cut(s) 830, 963
TspRI CASTG 3 cut(s) 114, 352, 754
VspI ATTAAT 1 cut(s) 1418
XagI CCTNNNNNAGG 1 cut(s) 1317
XapI RAATTY 4 cut(s) 145, 662, 1205, 1222
XceI RCATGY 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 1001
XspI CTAG 4 cut(s) 357, 555, 1188, 1436
ZraI GACGTC 1 cut(s) 1198
ZrmI AGTACT 3 cut(s) 649, 855, 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.