Rh7DG021900

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001096
Physical Location & Seq
Forward (+)
1746426 .. 1747600
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG021900.1

Sequence Viewer

Length: 810 bp
ATGAAGTACGATTCAGTGATTTCCAGAAGCATTCATCGGCTTGAGCAGAAGAGACTAAGATATGGAGCATTTCCTTGTTTCTTCCTGATAGCATTATGCTTTCGCATAGTGCTCGAGCTTGGTCTGATTCGACCAGCTTTGAACTTGCAGCTGTCAGTAATCAAAGGTGAACTTGACTGGGAGATGGGAATCGAAGAGGTTAAAGATGTCAGTCTTCAAGTAGGAGACTTTGGTCTACAGGAAAATGAGAGACATGAACCAGATGCAGAGTCAAATAGGACGGAGAAATATGAGTTTTGCGAGATCAACAAGGATGTTCGGGTGGATGGGAAATCGGCTCCAGCTGAAATGGATCTAGGAAATGGGAATAGCTCCTGGACAATAAGACCATATGCTCGAAAAGAAGACAAAAGGGCAATGAGGGATACACGAAAATGGTCGGTGCAACGAGTAACTAGTTTCCAGGAAATGCCTCAATGTACACGAAATCACACTGTTCCAGCCATCTTGTTTTCAACTGGAGGATATACAGGAAACCATTTCCATGAATTTGCTGATGTGGTTATTCCGTTCTATATTAATTCTCAAAAATATGATGGAGAAGTTCAATTTCTTATCACTGACAAACGATCTTGGTGGATTACAAAGGACAAAGCAGTACTACAAGGACTATCCAAGTATGAGGCTATTAACATTGATGAAGATGTAGTCCACTGCTTCCCAAGCACAACAGTTGGCCTTAAACGACATCCCAAGGATCTGATCCTTGATCCTTCACTATATTCCTATTCTATGAAAGAGATTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

269

Amino Acids

31.12

Weight (kDa)

6.2

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 235
AclWI GGATC 4 cut(s) 360, 757, 764, 765
AcsI RAATTY 1 cut(s) 548
AfaI GTAC 3 cut(s) 8, 481, 660
AgsI TTSAA 4 cut(s) 142, 218, 516, 608
AhlI ACTAGT 1 cut(s) 455
AjnI CCWGG 2 cut(s) 374, 462
AluBI AGCT 5 cut(s) 118, 137, 151, 344, 372
AluI AGCT 5 cut(s) 118, 137, 151, 344, 372
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 3 cut(s) 46, 219, 244
AlwI GGATC 4 cut(s) 360, 757, 764, 765
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 1 cut(s) 736
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 548
AseI ATTAAT 1 cut(s) 579
AsuHPI GGTGA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 113
BbsI GAAGAC 2 cut(s) 206, 411
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 160
BccI CCATC 4 cut(s) 178, 320, 512, 590
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BciT130I CCWGG 2 cut(s) 376, 464
BciVI GTATCC 1 cut(s) 418
BcoDI GTCTC 3 cut(s) 46, 219, 244
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 3 cut(s) 356, 456, 808
BfmI CTRYAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 418
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
BmcAI AGTACT 1 cut(s) 660
Bme1390I CCNGG 2 cut(s) 376, 464
BmeT110I CYCGRG 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 2 cut(s) 376, 464
BmrI ACTGGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 187
BoxI GACNNNNGTC 1 cut(s) 231
BpiI GAAGAC 2 cut(s) 206, 411
BpmI CTGGAG 2 cut(s) 324, 540
BpuEI CTTGAG 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 753
Bse1I ACTGG 2 cut(s) 182, 523
Bse3DI GCAATG 1 cut(s) 423
Bse8I GATNNNNATC 1 cut(s) 188
BseBI CCWGG 2 cut(s) 376, 464
BseDI CCNNGG 1 cut(s) 753
BseGI GGATG 3 cut(s) 319, 331, 748
BseJI GATNNNNATC 1 cut(s) 188
BseMI GCAATG 1 cut(s) 423
BseNI ACTGG 2 cut(s) 182, 523
BseXI GCAGC 1 cut(s) 160
BshFI GGCC 1 cut(s) 738
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 113
BsmAI GTCTC 3 cut(s) 46, 219, 244
BsmI GAATGC 1 cut(s) 30
BsnI GGCC 1 cut(s) 738
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 114
Bsp1407I TGTACA 1 cut(s) 479
Bsp143I GATC 6 cut(s) 303, 352, 629, 757, 762, 769
BspANI GGCC 1 cut(s) 738
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 4 cut(s) 360, 757, 764, 765
BsrDI GCAATG 1 cut(s) 423
BsrGI TGTACA 1 cut(s) 479
BsrI ACTGG 2 cut(s) 182, 523
BssECI CCNNGG 1 cut(s) 753
BssMI GATC 6 cut(s) 303, 352, 629, 757, 762, 769
BssT1I CCWWGG 1 cut(s) 753
Bst2UI CCWGG 2 cut(s) 376, 464
Bst4CI ACNGT 2 cut(s) 496, 733
Bst6I CTCTTC 2 cut(s) 44, 189
BstAUI TGTACA 1 cut(s) 479
BstDEI CTNAG 1 cut(s) 56
BstF5I GGATG 3 cut(s) 319, 331, 748
BstKTI GATC 6 cut(s) 306, 355, 632, 760, 765, 772
BstMAI GTCTC 3 cut(s) 46, 219, 244
BstMBI GATC 6 cut(s) 303, 352, 629, 757, 762, 769
BstMWI GCNNNNNNNGC 1 cut(s) 723
BstNI CCWGG 2 cut(s) 376, 464
BstPAI GACNNNNGTC 1 cut(s) 231
BstSCI CCNGG 2 cut(s) 374, 462
BstSFI CTRYAG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 2 cut(s) 206, 411
BstX2I RGATCY 2 cut(s) 352, 757
BstYI RGATCY 2 cut(s) 352, 757
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 1 cut(s) 738
BtsCI GGATG 3 cut(s) 319, 331, 748
BtsI GCAGTG 1 cut(s) 712
BtsIMutI CAGTG 4 cut(s) 21, 492, 618, 712
Csp6I GTAC 3 cut(s) 7, 480, 659
CviAII CATG 2 cut(s) 254, 545
CviQI GTAC 3 cut(s) 7, 480, 659
DdeI CTNAG 1 cut(s) 56
DpnI GATC 6 cut(s) 305, 354, 631, 759, 764, 771
DpnII GATC 6 cut(s) 303, 352, 629, 757, 762, 769
Eam1104I CTCTTC 2 cut(s) 44, 189
EarI CTCTTC 2 cut(s) 44, 189
Eco130I CCWWGG 1 cut(s) 753
Eco88I CYCGRG 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 374, 462
EcoT14I CCWWGG 1 cut(s) 753
ErhI CCWWGG 1 cut(s) 753
FaeI CATG 2 cut(s) 257, 548
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FatI CATG 2 cut(s) 253, 544
FauNDI CATATG 1 cut(s) 391
FblI GTMKAC 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 3 cut(s) 326, 338, 735
Fsp4HI GCNGC 1 cut(s) 149
FspBI CTAG 3 cut(s) 356, 456, 808
GluI GCNGC 1 cut(s) 149
GsuI CTGGAG 2 cut(s) 324, 540
HaeIII GGCC 1 cut(s) 738
Hin1II CATG 2 cut(s) 257, 548
HinfI GANTC 4 cut(s) 11, 127, 189, 269
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 4 cut(s) 170, 236, 482, 712
Hpy188I TCNGA 2 cut(s) 126, 762
Hpy188III TCNNGA 2 cut(s) 24, 85
Hpy8I GTNNAC 4 cut(s) 170, 236, 482, 712
HpyAV CCTTC 1 cut(s) 783
HpyCH4III ACNGT 2 cut(s) 496, 733
HpyCH4V TGCA 3 cut(s) 148, 266, 445
HpyF10VI GCNNNNNNNGC 1 cut(s) 723
HpyF3I CTNAG 1 cut(s) 56
Hsp92II CATG 2 cut(s) 257, 548
Kzo9I GATC 6 cut(s) 303, 352, 629, 757, 762, 769
LmnI GCTCC 3 cut(s) 65, 343, 377
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 253
MaeI CTAG 3 cut(s) 356, 456, 808
MaeIII GTNAC 1 cut(s) 451
MalI GATC 6 cut(s) 305, 354, 631, 759, 764, 771
MboI GATC 6 cut(s) 303, 352, 629, 757, 762, 769
MboII GAAGA 6 cut(s) 61, 73, 206, 206, 416, 713
MflI RGATCY 2 cut(s) 352, 757
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 3 cut(s) 548, 580, 608
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 5 cut(s) 190, 414, 483, 515, 676
MseI TTAA 4 cut(s) 201, 579, 690, 741
MslI CAYNNNNRTG 2 cut(s) 433, 543
MspA1I CMGCKG 2 cut(s) 151, 344
MspR9I CCNGG 2 cut(s) 376, 464
Mva1269I GAATGC 1 cut(s) 30
MvaI CCWGG 2 cut(s) 376, 464
MwoI GCNNNNNNNGC 1 cut(s) 723
NdeI CATATG 1 cut(s) 391
NdeII GATC 6 cut(s) 303, 352, 629, 757, 762, 769
NlaIII CATG 2 cut(s) 257, 548
NlaIV GGNNCC 1 cut(s) 339
PaeR7I CTCGAG 1 cut(s) 113
PctI GAATGC 1 cut(s) 30
PfeI GAWTC 3 cut(s) 11, 127, 189
PfoI TCCNGGA 2 cut(s) 374, 462
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PshAI GACNNNNGTC 1 cut(s) 231
PshBI ATTAAT 1 cut(s) 579
Psp6I CCWGG 2 cut(s) 374, 462
PspGI CCWGG 2 cut(s) 374, 462
PspN4I GGNNCC 1 cut(s) 339
PspXI VCTCGAGB 1 cut(s) 113
PsuI RGATCY 2 cut(s) 352, 757
PvuII CAGCTG 2 cut(s) 151, 344
RsaI GTAC 3 cut(s) 8, 481, 660
RsaNI GTAC 3 cut(s) 7, 480, 659
RseI CAYNNNNRTG 2 cut(s) 433, 543
SaqAI TTAA 4 cut(s) 201, 579, 690, 741
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 6 cut(s) 303, 352, 629, 757, 762, 769
ScaI AGTACT 1 cut(s) 660
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 376, 464
SduI GDGCHC 1 cut(s) 114
SetI ASST 7 cut(s) 120, 139, 153, 169, 201, 346, 374
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 236
Sfr274I CTCGAG 1 cut(s) 113
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 2 cut(s) 433, 543
SmlI CTYRAG 2 cut(s) 41, 113
SmoI CTYRAG 2 cut(s) 41, 113
SpeI ACTAGT 1 cut(s) 455
Sse9I AATT 3 cut(s) 548, 580, 608
SspMI CTAG 3 cut(s) 356, 456, 808
StyD4I CCNGG 2 cut(s) 374, 462
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 2 cut(s) 496, 733
TaqI TCGA 4 cut(s) 114, 130, 192, 397
TasI AATT 3 cut(s) 548, 580, 608
TatI WGTACW 2 cut(s) 479, 658
TfiI GAWTC 3 cut(s) 11, 127, 189
Tru1I TTAA 4 cut(s) 201, 579, 690, 741
Tru9I TTAA 4 cut(s) 201, 579, 690, 741
TscAI CASTG 4 cut(s) 21, 499, 625, 719
TseI GCWGC 1 cut(s) 148
TspDTI ATGAA 6 cut(s) 17, 23, 270, 561, 714, 809
TspGWI ACGGA 2 cut(s) 296, 558
TspRI CASTG 4 cut(s) 21, 499, 625, 719
VspI ATTAAT 1 cut(s) 579
XapI RAATTY 1 cut(s) 548
XhoI CTCGAG 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 235
XspI CTAG 3 cut(s) 356, 456, 808
ZrmI AGTACT 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.