RLG00000005378

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001096
Physical Location & Seq
Reverse (-)
67187217 .. 67189182
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005378

Sequence Viewer

Length: 1146 bp
ATGTTGCAAAGACAAGAAAATTACCGATTAATATGCAATGTTATGGAACCAAGAACTGAATTCTGTGAGATTGAGAATAGGGATGTTCGGGTCAATGGAAAAACGTCCTCAATGCATGTTCTTTCATCTCAAGGGGAGAATGTGATAGCAGCTGGGAATCACTCATGGACTATAAGACCTTATGCTCGAAAAGATGACGTAAAAGCAATAAGCCTCATTAGGAAATGGTCAGTGAAACAAGTACGTACTGGTGATCACCAGGAATCAATCCCTAAATGTACCAGAAATCATAGTGTTCCAGCCATCTTGTTTTCTATTGGTGGATATACATTAAATCAGTACCATGACTTTGCTGATTTTCTTATCACTGAGAATCGTATTAAGTGGATTCAAAAGTTCCAAGAAATACTAAAAGGACTTTCCAAGTATGAGCTTATTGACATTGACAAAGAATTAGAAAAAGTCCATTGCTTCCCAAGCGTAACGGTTGGCCTGAAAACATCTCGCAAGGAAATGACCTTTGATCCTTTGAGATATTCATATTCTATGAAAGACTTCAGAGAGTTTCTGAGAACCATTTATTCATTAAAGAGGGCCAATGCAATCAAACTCAGAGATGGACAGCGTCAACTAAACAAGCCTCGGCTTCCCATCCTATCAAGAAACAGAACAAGGTCTTTCACAAATACCGGAGAAATTAATGAGATGGCAAGAGACTTGGGGTACAAGGTAACTGTGGCAGAGGCTGACATGAATGTGCCAAAATTTGCAAATGTTGTGAATTCTTGTGATGTGATGATGGGAGTTCATGGAGTTGGTATTTTGAACATGATTTTCCTACCCGAAAATGCAATTTTTGTCCAGATAATTCCAGTTGGAAAGTTCCAATGGATTTCGACAACATACTATGGAGGGCCAGCAAAGGATATGAATCTAAAGTATTTGGAATATAAGATGAGCAATGAAGAGAGCACACTGATACAGCAATACCCACTTGATCATGCAGTTTTTGCTGACCCTATCTCAATTGGAAAACAAGGGTGGATGGCATTCAAGTCAATCTATCTGAACAAACAAAATGTAAAGCTTAATGTCACTAGGTTTAAACCCACGTTGTTAAAAGCCCTTGAGCTTTTGCAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

382

Amino Acids

44.08

Weight (kDa)

9.47

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 186 - 286 3.5e-08 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 518
AcsI RAATTY 3 cut(s) 59, 764, 781
AcuI CTGAAG 1 cut(s) 541
AfaI GTAC 5 cut(s) 243, 247, 280, 341, 725
AgsI TTSAA 3 cut(s) 392, 826, 1054
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 4 cut(s) 152, 433, 1087, 1132
AluI AGCT 4 cut(s) 152, 433, 1087, 1132
Alw21I GWGCWC 1 cut(s) 974
Alw26I GTCTC 1 cut(s) 708
AlwI GGATC 1 cut(s) 518
AlwNI CAGNNNCTG 1 cut(s) 746
AoxI GGCC 3 cut(s) 490, 594, 914
ApeKI GCWGC 2 cut(s) 149, 1138
ApoI RAATTY 3 cut(s) 59, 764, 781
AseI ATTAAT 2 cut(s) 29, 699
Asp700I GAANNNNTTC 1 cut(s) 554
AspS9I GGNCC 2 cut(s) 594, 914
AsuHPI GGTGA 2 cut(s) 248, 263
Bbv12I GWGCWC 1 cut(s) 974
BbvI GCAGC 1 cut(s) 161
BccI CCATC 6 cut(s) 311, 611, 659, 700, 793, 1039
BcgI CGANNNNNNTGC 2 cut(s) 15, 49
BciT130I CCWGG 1 cut(s) 260
BclI TGATCA 2 cut(s) 253, 997
BcoDI GTCTC 1 cut(s) 708
BfaI CTAG 1 cut(s) 1098
BisI GCNGC 2 cut(s) 150, 1139
BlsI GCNGC 2 cut(s) 151, 1140
Bme1390I CCNGG 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 594, 914
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 930
BsaJI CCNNGG 1 cut(s) 641
BsaWI WCCGGW 1 cut(s) 689
Bse1I ACTGG 2 cut(s) 253, 872
Bse3DI GCAATG 3 cut(s) 43, 466, 967
Bse8I GATNNNNATC 1 cut(s) 930
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 641
BseGI GGATG 3 cut(s) 88, 651, 1050
BseJI GATNNNNATC 1 cut(s) 930
BseMI GCAATG 3 cut(s) 43, 466, 967
BseMII CTCAG 3 cut(s) 360, 560, 625
BseNI ACTGG 2 cut(s) 253, 872
BseXI GCAGC 1 cut(s) 161
BseYI CCCAGC 1 cut(s) 152
BshFI GGCC 3 cut(s) 492, 596, 916
BsiHKAI GWGCWC 1 cut(s) 974
BsiSI CCGG 1 cut(s) 690
BsmAI GTCTC 1 cut(s) 708
BsmI GAATGC 1 cut(s) 1049
BsnI GGCC 3 cut(s) 492, 596, 916
Bsp1286I GDGCHC 1 cut(s) 974
Bsp143I GATC 3 cut(s) 253, 523, 997
BspANI GGCC 3 cut(s) 492, 596, 916
BspCNI CTCAG 3 cut(s) 361, 561, 624
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 1 cut(s) 518
BsrDI GCAATG 3 cut(s) 43, 466, 967
BsrI ACTGG 2 cut(s) 253, 872
BssECI CCNNGG 1 cut(s) 641
BssMI GATC 3 cut(s) 253, 523, 997
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 487, 736
Bst6I CTCTTC 1 cut(s) 960
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstBAI YACGTR 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 918
BstDEI CTNAG 3 cut(s) 369, 569, 611
BstF5I GGATG 3 cut(s) 88, 651, 1050
BstKTI GATC 3 cut(s) 256, 526, 1000
BstMAI GTCTC 1 cut(s) 708
BstMBI GATC 3 cut(s) 253, 523, 997
BstMWI GCNNNNNNNGC 3 cut(s) 477, 1010, 1138
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 258
BstSNI TACGTA 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 161
BsuRI GGCC 3 cut(s) 492, 596, 916
BtsCI GGATG 3 cut(s) 88, 651, 1050
BtsIMutI CAGTG 3 cut(s) 237, 366, 974
Cac8I GCNNGC 1 cut(s) 918
CaiI CAGNNNCTG 1 cut(s) 746
Cfr13I GGNCC 2 cut(s) 594, 914
CseI GACGC 1 cut(s) 614
Csp6I GTAC 5 cut(s) 242, 246, 279, 340, 724
CviAII CATG 7 cut(s) 116, 165, 344, 751, 809, 829, 1001
CviQI GTAC 5 cut(s) 242, 246, 279, 340, 724
DdeI CTNAG 3 cut(s) 369, 569, 611
DpnI GATC 3 cut(s) 255, 525, 999
DpnII GATC 3 cut(s) 253, 523, 997
DraI TTTAAA 1 cut(s) 1105
Eam1104I CTCTTC 1 cut(s) 960
EarI CTCTTC 1 cut(s) 960
Eco105I TACGTA 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 541
EcoRI GAATTC 2 cut(s) 59, 781
EcoRII CCWGG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 117
FaeI CATG 7 cut(s) 119, 168, 347, 754, 812, 832, 1004
FatI CATG 7 cut(s) 115, 164, 343, 750, 808, 828, 1000
FbaI TGATCA 2 cut(s) 253, 997
Fnu4HI GCNGC 2 cut(s) 150, 1139
FokI GGATG 3 cut(s) 95, 638, 1057
Fsp4HI GCNGC 2 cut(s) 150, 1139
FspBI CTAG 1 cut(s) 1098
GluI GCNGC 2 cut(s) 150, 1139
GsaI CCCAGC 1 cut(s) 156
HaeIII GGCC 3 cut(s) 492, 596, 916
HapII CCGG 1 cut(s) 690
HgaI GACGC 1 cut(s) 614
Hin1II CATG 7 cut(s) 119, 168, 347, 754, 812, 832, 1004
HincII GTYRAC 1 cut(s) 629
HindII GTYRAC 1 cut(s) 629
HindIII AAGCTT 1 cut(s) 1085
HinfI GANTC 5 cut(s) 157, 263, 373, 388, 931
HpaII CCGG 1 cut(s) 690
HphI GGTGA 2 cut(s) 248, 263
Hpy166II GTNNAC 1 cut(s) 629
Hpy188I TCNGA 4 cut(s) 560, 570, 614, 1068
Hpy188III TCNNGA 2 cut(s) 660, 862
Hpy8I GTNNAC 1 cut(s) 629
HpyCH4III ACNGT 2 cut(s) 487, 736
HpyCH4IV ACGT 4 cut(s) 104, 198, 244, 1112
HpyCH4V TGCA 8 cut(s) 7, 36, 115, 602, 770, 851, 1004, 1138
HpyF10VI GCNNNNNNNGC 3 cut(s) 477, 1010, 1138
HpyF3I CTNAG 3 cut(s) 369, 569, 611
HpySE526I ACGT 4 cut(s) 104, 198, 244, 1112
Hsp92II CATG 7 cut(s) 119, 168, 347, 754, 812, 832, 1004
Ksp22I TGATCA 2 cut(s) 253, 997
Kzo9I GATC 3 cut(s) 253, 523, 997
Lsp1109I GCAGC 1 cut(s) 161
MaeI CTAG 1 cut(s) 1098
MaeII ACGT 4 cut(s) 104, 198, 244, 1112
MaeIII GTNAC 3 cut(s) 481, 730, 1093
MalI GATC 3 cut(s) 255, 525, 999
MboI GATC 3 cut(s) 253, 523, 997
MboII GAAGA 1 cut(s) 977
MfeI CAATTG 1 cut(s) 1026
MhlI GDGCHC 1 cut(s) 974
MluCI AATT 9 cut(s) 19, 59, 452, 696, 764, 781, 852, 867, 1026
MmeI TCCRAC 1 cut(s) 856
MnlI CCTC 6 cut(s) 118, 224, 585, 651, 736, 905
Mph1103I ATGCAT 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 554
MseI TTAA 8 cut(s) 29, 332, 381, 587, 699, 1089, 1104, 1118
MslI CAYNNNNRTG 1 cut(s) 755
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 690
MspR9I CCNGG 1 cut(s) 260
MssI GTTTAAAC 1 cut(s) 1105
MunI CAATTG 1 cut(s) 1026
Mva1269I GAATGC 1 cut(s) 1049
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 3 cut(s) 477, 1010, 1138
NdeII GATC 3 cut(s) 253, 523, 997
NlaIII CATG 7 cut(s) 119, 168, 347, 754, 812, 832, 1004
NlaIV GGNNCC 1 cut(s) 48
NmeAIII GCCGAG 1 cut(s) 622
NmuCI GTSAC 1 cut(s) 1093
NsiI ATGCAT 1 cut(s) 117
NspI RCATGY 1 cut(s) 119
PctI GAATGC 1 cut(s) 1049
PdmI GAANNNNTTC 1 cut(s) 554
PfeI GAWTC 5 cut(s) 157, 263, 373, 388, 931
PflFI GACNNNGTC 1 cut(s) 624
PkrI GCNGC 2 cut(s) 151, 1140
PmeI GTTTAAAC 1 cut(s) 1105
Ppu21I YACGTR 1 cut(s) 245
PshBI ATTAAT 2 cut(s) 29, 699
Psp6I CCWGG 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 2 cut(s) 594, 914
PstNI CAGNNNCTG 1 cut(s) 746
PsyI GACNNNGTC 1 cut(s) 624
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 5 cut(s) 243, 247, 280, 341, 725
RsaNI GTAC 5 cut(s) 242, 246, 279, 340, 724
RseI CAYNNNNRTG 1 cut(s) 755
SaqAI TTAA 8 cut(s) 29, 332, 381, 587, 699, 1089, 1104, 1118
SatI GCNGC 2 cut(s) 150, 1139
Sau3AI GATC 3 cut(s) 253, 523, 997
Sau96I GGNCC 2 cut(s) 594, 914
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 1 cut(s) 974
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 2 cut(s) 129, 1127
SmoI CTYRAG 2 cut(s) 129, 1127
SnaBI TACGTA 1 cut(s) 245
Sse9I AATT 9 cut(s) 19, 59, 452, 696, 764, 781, 852, 867, 1026
SspMI CTAG 1 cut(s) 1098
StyD4I CCNGG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 487, 736
TaiI ACGT 4 cut(s) 107, 201, 247, 1115
TaqI TCGA 2 cut(s) 187, 896
TasI AATT 9 cut(s) 19, 59, 452, 696, 764, 781, 852, 867, 1026
TfiI GAWTC 5 cut(s) 157, 263, 373, 388, 931
Tru1I TTAA 8 cut(s) 29, 332, 381, 587, 699, 1089, 1104, 1118
Tru9I TTAA 8 cut(s) 29, 332, 381, 587, 699, 1089, 1104, 1118
TscAI CASTG 3 cut(s) 237, 373, 981
TseFI GTSAC 1 cut(s) 1093
TseI GCWGC 2 cut(s) 149, 1138
Tsp45I GTSAC 1 cut(s) 1093
TspDTI ATGAA 8 cut(s) 114, 528, 563, 573, 767, 797, 944, 978
TspRI CASTG 3 cut(s) 237, 373, 981
Tth111I GACNNNGTC 1 cut(s) 624
VspI ATTAAT 2 cut(s) 29, 699
XapI RAATTY 3 cut(s) 59, 764, 781
XceI RCATGY 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 554
XspI CTAG 1 cut(s) 1098
Zsp2I ATGCAT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.