Rroxscaffold_3G00274230

Glycosyltransferase-like domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001096
Physical Location & Seq
Reverse (-)
65876359 .. 65877921
1563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00274230.1

Sequence Viewer

Length: 495 bp
ATGAAGTACGATTCAGTGATTTCCAGAAGCATTCATCGGCTTGAGCAGAAGAGACTAAGATCTGGAACATTTCCTTGTTTCTTCCTAATAGCATTATGCTTTCGCATAGTGCTCGAGCTTGGTCTGATTCGACCAGCTTTGAACTTGCAGCTGTCAGTAATCAAAGGTGAACTTGACTGGGAGATGGGAATCGAAGAGGTTAAAGATGTCAGTCTTCAAGTAGGAGACTTTGGTCTACAGGAAAATGAGAGACATGAACCAGATGCAGAGACAAATAAGGCTGACAAAAACATGTCAAAAATCGCAGAAGTTGTGAATTCTAGTGACGTGTTAATGGGAGTCCATGGAGCTGGCCTTGCAAACATTCTTTTCCATCCTGAAAATGCAATTTTTATTCAAATACTTCCTGTAGGAGGAATGGAGGATTCGAATGGACTGCAGCAAACTACTTCCGAGAGCCTTCAAGATAAGCAAGGAGAGCATAATGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

164

Amino Acids

18.25

Weight (kDa)

5.09

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 235
AcsI RAATTY 1 cut(s) 316
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 413
AflIII ACRYGT 2 cut(s) 291, 327
AgsI TTSAA 4 cut(s) 142, 218, 398, 464
AjiI CACGTC 1 cut(s) 328
AluBI AGCT 4 cut(s) 118, 137, 151, 350
AluI AGCT 4 cut(s) 118, 137, 151, 350
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 4 cut(s) 46, 219, 244, 263
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 2 cut(s) 148, 439
ApoI RAATTY 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 179
AsuII TTCGAA 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 160, 451
BccI CCATC 2 cut(s) 178, 381
BcgI CGANNNNNNTGC 4 cut(s) 94, 128, 418, 452
BcoDI GTCTC 4 cut(s) 46, 219, 244, 263
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 3 cut(s) 236, 408, 437
BglII AGATCT 1 cut(s) 59
BisI GCNGC 2 cut(s) 149, 440
BlsI GCNGC 2 cut(s) 150, 441
BmeT110I CYCGRG 1 cut(s) 113
BmgBI CACGTC 1 cut(s) 328
BmrI ACTGGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 187
BoxI GACNNNNGTC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 206
Bpu14I TTCGAA 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 343
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 373
BseJI GATNNNNATC 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 413
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 160, 451
BshFI GGCC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 4 cut(s) 46, 219, 244, 263
BsmI GAATGC 1 cut(s) 30
BsnI GGCC 1 cut(s) 354
BsoBI CYCGRG 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 59
Bsp19I CCATGG 1 cut(s) 343
BspANI GGCC 1 cut(s) 354
BspMAI CTGCAG 1 cut(s) 441
BspT104I TTCGAA 1 cut(s) 428
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 343
Bst6I CTCTTC 2 cut(s) 44, 189
BstBI TTCGAA 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 1 cut(s) 56
BstDSI CCRYGG 1 cut(s) 343
BstENI CCTNNNNNAGG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 1 cut(s) 62
BstMAI GTCTC 4 cut(s) 46, 219, 244, 263
BstMBI GATC 1 cut(s) 59
BstMWI GCNNNNNNNGC 2 cut(s) 356, 478
BstNSI RCATGY 1 cut(s) 295
BstPAI GACNNNNGTC 1 cut(s) 231
BstSFI CTRYAG 3 cut(s) 236, 408, 437
BstV1I GCAGC 2 cut(s) 160, 451
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 1 cut(s) 59
BsuRI GGCC 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 343
BtrI CACGTC 1 cut(s) 328
BtsCI GGATG 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 352
Csp6I GTAC 1 cut(s) 7
CviAII CATG 3 cut(s) 254, 292, 344
CviJI RGCY 8 cut(s) 40, 118, 137, 151, 281, 350, 354, 459
CviKI_1 RGCY 8 cut(s) 40, 118, 137, 151, 281, 350, 354, 459
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 56
DpnI GATC 1 cut(s) 61
DpnII GATC 1 cut(s) 59
Eam1104I CTCTTC 2 cut(s) 44, 189
EarI CTCTTC 2 cut(s) 44, 189
Eco130I CCWWGG 1 cut(s) 343
Eco88I CYCGRG 1 cut(s) 113
EcoNI CCTNNNNNAGG 1 cut(s) 411
EcoRI GAATTC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 343
FaeI CATG 3 cut(s) 257, 295, 347
FaiI YATR 6 cut(s) 97, 107, 255, 293, 345, 483
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FatI CATG 3 cut(s) 253, 291, 343
FblI GTMKAC 1 cut(s) 235
Fnu4HI GCNGC 2 cut(s) 149, 440
FokI GGATG 1 cut(s) 360
Fsp4HI GCNGC 2 cut(s) 149, 440
FspBI CTAG 1 cut(s) 321
GluI GCNGC 2 cut(s) 149, 440
HaeIII GGCC 1 cut(s) 354
Hin1II CATG 3 cut(s) 257, 295, 347
HinfI GANTC 5 cut(s) 11, 127, 189, 339, 425
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 2 cut(s) 170, 236
Hpy188I TCNGA 2 cut(s) 126, 454
Hpy188III TCNNGA 4 cut(s) 24, 63, 377, 464
Hpy8I GTNNAC 2 cut(s) 170, 236
HpyAV CCTTC 1 cut(s) 470
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 5 cut(s) 148, 266, 359, 386, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 478
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 3 cut(s) 257, 295, 347
Kzo9I GATC 1 cut(s) 59
LmnI GCTCC 1 cut(s) 347
LpnPI CCDG 9 cut(s) 37, 48, 147, 163, 224, 273, 336, 390, 420
Lsp1109I GCAGC 2 cut(s) 160, 451
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 321
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 323
MalI GATC 1 cut(s) 61
MboI GATC 1 cut(s) 59
MboII GAAGA 4 cut(s) 61, 73, 206, 206
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 2 cut(s) 316, 387
MlyI GAGTC 1 cut(s) 348
MnlI CCTC 3 cut(s) 190, 407, 415
MseI TTAA 2 cut(s) 201, 332
MspA1I CMGCKG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 356, 478
NcoI CCATGG 1 cut(s) 343
NdeII GATC 1 cut(s) 59
NlaIII CATG 3 cut(s) 257, 295, 347
NmuCI GTSAC 1 cut(s) 323
NspI RCATGY 1 cut(s) 295
NspV TTCGAA 1 cut(s) 428
PaeR7I CTCGAG 1 cut(s) 113
PciI ACATGT 1 cut(s) 291
PctI GAATGC 1 cut(s) 30
PfeI GAWTC 4 cut(s) 11, 127, 189, 425
PkrI GCNGC 2 cut(s) 150, 441
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
PscI ACATGT 1 cut(s) 291
PshAI GACNNNNGTC 1 cut(s) 231
PspXI VCTCGAGB 1 cut(s) 113
PstI CTGCAG 1 cut(s) 441
PsuI RGATCY 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 151
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 2 cut(s) 201, 332
SatI GCNGC 2 cut(s) 149, 440
Sau3AI GATC 1 cut(s) 59
SchI GAGTC 1 cut(s) 348
SduI GDGCHC 1 cut(s) 114
SetI ASST 7 cut(s) 120, 139, 153, 169, 201, 330, 352
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 3 cut(s) 236, 408, 437
Sfr274I CTCGAG 1 cut(s) 113
SfuI TTCGAA 1 cut(s) 428
SlaI CTCGAG 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 41, 113
SmoI CTYRAG 2 cut(s) 41, 113
Sse9I AATT 2 cut(s) 316, 387
SspMI CTAG 1 cut(s) 321
StyI CCWWGG 1 cut(s) 343
TaiI ACGT 1 cut(s) 330
TaqI TCGA 4 cut(s) 114, 130, 192, 428
TasI AATT 2 cut(s) 316, 387
TfiI GAWTC 4 cut(s) 11, 127, 189, 425
Tru1I TTAA 2 cut(s) 201, 332
Tru9I TTAA 2 cut(s) 201, 332
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 2 cut(s) 148, 439
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 3 cut(s) 17, 23, 270
TspRI CASTG 1 cut(s) 21
XagI CCTNNNNNAGG 1 cut(s) 411
XapI RAATTY 1 cut(s) 316
XceI RCATGY 1 cut(s) 295
XhoI CTCGAG 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 235
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.