Rh7AG020600

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
1402423 .. 1405432
3010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG020600.1

Sequence Viewer

Length: 1488 bp
ATGGAGAGAGAAGACAACAAACCATCCTTGAGCTCACCATTGATTCCAGTTCGTGAAGAAGATGGAGTTATATTAGAAGAAGAGAGGAGCCATGAGAAGTGGTTCAAGAAAGAGGAAGTTGTAGAAGAACTGAAGAAGCAGTTATGGCTAGCAGGGCCTCTTATATCTGTGAGTATATTACAGTACTCTATACAGATAATAGCTGTCATGTTTGTAGGTCATCTTGGTGAGTTGTCTCTATCCGGTGCTACCATGGCGCTTTCCTTCACATCAGTCACCGGTTTCAGCTTGCTGATGGGAATGTCGAGTGCATTGGATACTTTATCTGGGCAGTGTTATGGTGCAAAGCAATATCATATGATGGGCATACACATGCAGAGAGCAATGTTTGTTCTTTTACTAGTGTGCATACCCCTCGCTATCATTTCCGCCAACACAAGAATCATCTTAATAGCTCTAGGCCAAGACGTTGACATATCTACCGAAGCTGGAAAATTTGCACGTTTCAATATCCCTTCCCTTTTTGCATATGCACTTCTTCAGTGTCTCGTGAGATTCTTACAGACTCAAAACATTGTATTTCCAATGATGCTGAGCTCTGGAATCACTACTTTACTGCATATCCCTATCTGTTGGCTTCTTGTGTTTAATTCTGGACTTGGAGGTAGGGGAGCTGCACTGGCAAATTCCATCTCTTATTGGATCAATGTGGTACTTTTGGTGCTTTATGTCAGGTTCTCTTCATCATGTGCAAAAACTTGGACAGGCCTTTCGAGGGAGGCCTTTCAAAATGTTGTTACATTTCTTAGACTCGCTATTCCGTCGGCTGTCATGGTCTGCTTGGAAATGTGGTCGTTTGAATTGATTGTTCTTCTATCTGGTCTTCTTCCTAACCCAGAGTTGGAAACCTCAGTGCTTTCTATCAGCCTTAATACAGCAGCAATGGTTTGGATGATCCCTTTCGGACTCAGTTCTGCTGTGAGCACTCGAGTCTCGAATGAATTAGGAGCAGGGCATCCAAAAACAGCACGGTTATCAGTATGTGTGGTCTTAGTCATGGCCATCACTGAGGGTTTATTGGTGGGATTAGTCCTGATACTAATACGCAACTTCTGGGGATACGCTTATAGCAATGAAACAGAAGTGATCGATTATCTGGCAACCATGATGCCAATACTTGCTACATCCAACTTCTTGGATGGTCTCCAGTGTGTTCTTTCAGGCACTGCAAGAGGATGTGGGTGGCAGAAGATTGGAGCATATGTCAATCTTGGATCATATTATTTGGTTGGAATTCCATTGGCCGTTTTAATGGCATTTATCTTGCACATTGGTGGAAAGGGGCTCTGGCTAGGAATCATCTGTGCACTCATTGTGCAAGTGTTGTCACTTCTTACTATAACCATACGAACCAACTGGGAGAAAGAGGCGAAACAAGCTACAGAAAGAGTATATGACTCAACAGTTCCGGTTGACATAGTTTCATGA

Protein Analysis

495

Amino Acids

54.22

Weight (kDa)

6.02

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 53 - 213 4.3e-34 MatE
MatE PF01554 274 - 437 9.9e-31 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52450
fragaria_vesca FvH4_5g16890 FvH4_5g16890
malus_domestica MD06G1222800.v1.1
prunus_persica Prupe.5G227700_v2.0.a1
pyrus_communis pycom06g19860
rosa_chinensis RchiOBHm_Chr7g0179161
rosa_laevigata RLG00000005380
rosa_multiflora Rmu_sc0000888.1_g000021
rosa_roxburghii Rroxscaffold_3G00274250
rosa_rugosa Rorug06G0421700
rosa_samantha Rh7AG020600 Rh7BG020900 Rh7CG022000 Rh7DG021500
rosa_wichuraiana Rw7G001740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 429
AclWI GGATC 3 cut(s) 710, 949, 1282
AcoI YGGCCR 2 cut(s) 1059, 1302
AcsI RAATTY 3 cut(s) 494, 685, 1293
AcuI CTGAAG 2 cut(s) 152, 524
AfaI GTAC 2 cut(s) 185, 714
AfiI CCNNNNNNNGG 2 cut(s) 775, 901
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 4 cut(s) 106, 508, 788, 860
AhlI ACTAGT 1 cut(s) 400
AleI CACNNNNGTG 1 cut(s) 1332
AluBI AGCT 8 cut(s) 33, 203, 288, 455, 488, 597, 674, 1439
AluI AGCT 8 cut(s) 33, 203, 288, 455, 488, 597, 674, 1439
Alw21I GWGCWC 4 cut(s) 35, 599, 986, 1369
Alw26I GTCTC 4 cut(s) 240, 551, 997, 1208
Alw44I GTGCAC 1 cut(s) 1365
AlwI GGATC 3 cut(s) 710, 949, 1282
AlwNI CAGNNNCTG 1 cut(s) 1226
Ama87I CYCGRG 1 cut(s) 987
AoxI GGCC 6 cut(s) 155, 460, 766, 780, 1059, 1302
ApaLI GTGCAC 1 cut(s) 1365
ApeKI GCWGC 2 cut(s) 674, 938
ApoI RAATTY 3 cut(s) 494, 685, 1293
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
AsiGI ACCGGT 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 3 cut(s) 27, 239, 268
AsuNHI GCTAGC 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 987
BaeGI GKGCMC 1 cut(s) 1369
BalI TGGCCA 1 cut(s) 1061
BanII GRGCYC 3 cut(s) 35, 599, 1347
BauI CACGAG 1 cut(s) 548
BbsI GAAGAC 2 cut(s) 18, 875
Bbv12I GWGCWC 4 cut(s) 35, 599, 986, 1369
BbvI GCAGC 2 cut(s) 661, 950
BccI CCATC 7 cut(s) 31, 56, 289, 355, 698, 1070, 1193
BceAI ACGGC 1 cut(s) 1289
BcgI CGANNNNNNTGC 2 cut(s) 397, 431
BciVI GTATCC 2 cut(s) 310, 1112
BcoDI GTCTC 4 cut(s) 240, 551, 997, 1208
BcuI ACTAGT 1 cut(s) 400
BfaI CTAG 4 cut(s) 149, 401, 458, 1352
BfmI CTRYAG 1 cut(s) 1440
BfoI RGCGCY 1 cut(s) 260
BfuI GTATCC 2 cut(s) 310, 1112
BisI GCNGC 2 cut(s) 675, 939
BlpI GCTNAGC 1 cut(s) 593
BlsI GCNGC 2 cut(s) 676, 940
BmcAI AGTACT 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 987
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 89
BmrI ACTGGG 1 cut(s) 1426
BmsI GCATC 3 cut(s) 579, 1024, 1158
BmtI GCTAGC 1 cut(s) 152
BmuI ACTGGG 1 cut(s) 1426
BpiI GAAGAC 2 cut(s) 18, 875
BpmI CTGGAG 1 cut(s) 1190
Bpu1102I GCTNAGC 1 cut(s) 593
BpuEI CTTGAG 1 cut(s) 49
Bsa29I ATCGAT 1 cut(s) 1149
BsaI GGTCTC 1 cut(s) 1208
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 3 cut(s) 242, 278, 1468
BsaXI ACNNNNNCTCC 2 cut(s) 1248, 1278
Bsc4I CCNNNNNNNGG 2 cut(s) 775, 901
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 4 cut(s) 47, 684, 1207, 1421
Bse3DI GCAATG 3 cut(s) 390, 948, 1138
BseCI ATCGAT 1 cut(s) 1149
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 6 cut(s) 23, 957, 1015, 1184, 1204, 1241
BseLI CCNNNNNNNGG 2 cut(s) 775, 901
BseMI GCAATG 3 cut(s) 390, 948, 1138
BseMII CTCAG 4 cut(s) 584, 924, 982, 1059
BseNI ACTGG 4 cut(s) 47, 684, 1207, 1421
BseRI GAGGAG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 1369
BseXI GCAGC 2 cut(s) 661, 950
BsgI GTGCAG 1 cut(s) 660
BshFI GGCC 6 cut(s) 157, 462, 768, 782, 1061, 1304
BshTI ACCGGT 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 1149
BsiHKAI GWGCWC 4 cut(s) 35, 599, 986, 1369
BsiHKCI CYCGRG 1 cut(s) 987
BsiSI CCGG 3 cut(s) 243, 279, 1469
BslI CCNNNNNNNGG 2 cut(s) 775, 901
BsmAI GTCTC 4 cut(s) 240, 551, 997, 1208
BsnI GGCC 6 cut(s) 157, 462, 768, 782, 1061, 1304
Bso31I GGTCTC 1 cut(s) 1208
BsoBI CYCGRG 1 cut(s) 987
Bsp1286I GDGCHC 5 cut(s) 35, 599, 986, 1347, 1369
Bsp143I GATC 4 cut(s) 702, 954, 1146, 1274
Bsp1720I GCTNAGC 1 cut(s) 593
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 1 cut(s) 429
BspANI GGCC 6 cut(s) 157, 462, 768, 782, 1061, 1304
BspCNI CTCAG 4 cut(s) 585, 923, 981, 1060
BspDI ATCGAT 1 cut(s) 1149
BspHI TCATGA 1 cut(s) 1484
BspLI GGNNCC 1 cut(s) 89
BspOI GCTAGC 1 cut(s) 152
BspPI GGATC 3 cut(s) 710, 949, 1282
BspTNI GGTCTC 1 cut(s) 1208
BsrDI GCAATG 3 cut(s) 390, 948, 1138
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 4 cut(s) 47, 684, 1207, 1421
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 4 cut(s) 702, 954, 1146, 1274
BssSI CACGAG 1 cut(s) 548
BssT1I CCWWGG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 548
Bst4CI ACNGT 3 cut(s) 183, 1032, 1465
Bst6I CTCTTC 2 cut(s) 75, 745
BstC8I GCNNGC 2 cut(s) 150, 290
BstDEI CTNAG 6 cut(s) 593, 806, 910, 968, 1051, 1068
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 6 cut(s) 23, 957, 1015, 1184, 1204, 1241
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 4 cut(s) 705, 957, 1149, 1277
BstMAI GTCTC 4 cut(s) 240, 551, 997, 1208
BstMBI GATC 4 cut(s) 702, 954, 1146, 1274
BstMWI GCNNNNNNNGC 5 cut(s) 145, 154, 254, 680, 1436
BstNSI RCATGY 1 cut(s) 376
BstSFI CTRYAG 1 cut(s) 1440
BstSLI GKGCMC 1 cut(s) 1369
BstV1I GCAGC 2 cut(s) 661, 950
BstV2I GAAGAC 2 cut(s) 18, 875
BstXI CCANNNNNNTGG 1 cut(s) 1195
Bsu15I ATCGAT 1 cut(s) 1149
BsuI GTATCC 2 cut(s) 310, 1112
BsuRI GGCC 6 cut(s) 157, 462, 768, 782, 1061, 1304
BsuTUI ATCGAT 1 cut(s) 1149
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 6 cut(s) 23, 957, 1015, 1184, 1204, 1241
BtsI GCAGTG 2 cut(s) 338, 1224
BtsIMutI CAGTG 7 cut(s) 338, 548, 677, 918, 1065, 1214, 1224
Cac8I GCNNGC 2 cut(s) 150, 290
CaiI CAGNNNCTG 1 cut(s) 1226
CciI TCATGA 1 cut(s) 1484
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 155
ClaI ATCGAT 1 cut(s) 1149
Csp6I GTAC 2 cut(s) 184, 713
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 9 cut(s) 92, 208, 253, 373, 747, 832, 1057, 1165, 1485
CviQI GTAC 2 cut(s) 184, 713
DdeI CTNAG 6 cut(s) 593, 806, 910, 968, 1051, 1068
DpnI GATC 4 cut(s) 704, 956, 1148, 1276
DpnII GATC 4 cut(s) 702, 954, 1146, 1274
EaeI YGGCCR 2 cut(s) 1059, 1302
Eam1104I CTCTTC 2 cut(s) 75, 745
EarI CTCTTC 2 cut(s) 75, 745
EciI GGCGGA 1 cut(s) 418
Ecl136II GAGCTC 2 cut(s) 33, 597
Eco130I CCWWGG 1 cut(s) 252
Eco147I AGGCCT 2 cut(s) 768, 782
Eco24I GRGCYC 3 cut(s) 35, 599, 1347
Eco31I GGTCTC 1 cut(s) 1208
Eco53kI GAGCTC 2 cut(s) 33, 597
Eco57I CTGAAG 2 cut(s) 152, 524
Eco88I CYCGRG 1 cut(s) 987
EcoICRI GAGCTC 2 cut(s) 33, 597
EcoO109I RGGNCCY 1 cut(s) 155
EcoRI GAATTC 1 cut(s) 1293
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 3 cut(s) 35, 599, 1347
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 9 cut(s) 95, 211, 256, 376, 750, 835, 1060, 1168, 1488
FatI CATG 9 cut(s) 91, 207, 252, 372, 746, 831, 1056, 1164, 1484
FauNDI CATATG 3 cut(s) 357, 529, 1261
Fnu4HI GCNGC 2 cut(s) 675, 939
FokI GGATG 6 cut(s) 10, 964, 1002, 1171, 1211, 1248
FriOI GRGCYC 3 cut(s) 35, 599, 1347
Fsp4HI GCNGC 2 cut(s) 675, 939
FspBI CTAG 4 cut(s) 149, 401, 458, 1352
GlaI GCGC 1 cut(s) 258
GluI GCNGC 2 cut(s) 675, 939
GsuI CTGGAG 1 cut(s) 1190
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 6 cut(s) 157, 462, 768, 782, 1061, 1304
HapII CCGG 3 cut(s) 243, 279, 1469
HhaI GCGC 1 cut(s) 259
Hin1II CATG 9 cut(s) 95, 211, 256, 376, 750, 835, 1060, 1168, 1488
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HincII GTYRAC 2 cut(s) 472, 1474
HindII GTYRAC 2 cut(s) 472, 1474
HpaII CCGG 3 cut(s) 243, 279, 1469
HphI GGTGA 3 cut(s) 27, 239, 268
Hpy166II GTNNAC 3 cut(s) 472, 1367, 1474
Hpy188I TCNGA 1 cut(s) 965
Hpy188III TCNNGA 8 cut(s) 53, 106, 550, 600, 654, 994, 1093, 1485
Hpy8I GTNNAC 3 cut(s) 472, 1367, 1474
Hpy99I CGWCG 1 cut(s) 826
HpyAV CCTTC 2 cut(s) 274, 525
HpyCH4III ACNGT 3 cut(s) 183, 1032, 1465
HpyCH4IV ACGT 2 cut(s) 468, 502
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 154, 254, 680, 1436
HpyF3I CTNAG 6 cut(s) 593, 806, 910, 968, 1051, 1068
HpySE526I ACGT 2 cut(s) 468, 502
Hsp92II CATG 9 cut(s) 95, 211, 256, 376, 750, 835, 1060, 1168, 1488
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 4 cut(s) 702, 954, 1146, 1274
LmnI GCTCC 4 cut(s) 87, 671, 1007, 1256
Lsp1109I GCAGC 2 cut(s) 661, 950
LweI GCATC 3 cut(s) 579, 1024, 1158
MaeI CTAG 4 cut(s) 149, 401, 458, 1352
MaeII ACGT 2 cut(s) 468, 502
MaeIII GTNAC 3 cut(s) 274, 796, 1386
MalI GATC 4 cut(s) 704, 956, 1148, 1276
MboI GATC 4 cut(s) 702, 954, 1146, 1274
MhlI GDGCHC 5 cut(s) 35, 599, 986, 1347, 1369
MlsI TGGCCA 1 cut(s) 1061
MluCI AATT 6 cut(s) 494, 649, 685, 860, 1001, 1293
MluNI TGGCCA 1 cut(s) 1061
MlyI GAGTC 5 cut(s) 559, 804, 960, 999, 1451
MmeI TCCRAC 3 cut(s) 882, 1212, 1270
Mox20I TGGCCA 1 cut(s) 1061
MroXI GAANNNNTTC 1 cut(s) 101
MscI TGGCCA 1 cut(s) 1061
MseI TTAA 4 cut(s) 449, 648, 930, 1310
MslI CAYNNNNRTG 3 cut(s) 225, 371, 1332
Msp20I TGGCCA 1 cut(s) 1061
MspI CCGG 3 cut(s) 243, 279, 1469
MwoI GCNNNNNNNGC 5 cut(s) 145, 154, 254, 680, 1436
NcoI CCATGG 1 cut(s) 252
NdeI CATATG 3 cut(s) 357, 529, 1261
NdeII GATC 4 cut(s) 702, 954, 1146, 1274
NheI GCTAGC 1 cut(s) 148
NlaIII CATG 9 cut(s) 95, 211, 256, 376, 750, 835, 1060, 1168, 1488
NlaIV GGNNCC 1 cut(s) 89
NmuCI GTSAC 2 cut(s) 274, 1386
NspI RCATGY 1 cut(s) 376
OliI CACNNNNGTG 1 cut(s) 1332
PaeR7I CTCGAG 1 cut(s) 987
PagI TCATGA 1 cut(s) 1484
PceI AGGCCT 2 cut(s) 768, 782
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 5 cut(s) 43, 441, 555, 603, 1356
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 2 cut(s) 676, 940
PleI GAGTC 5 cut(s) 559, 804, 960, 998, 1451
PpsI GAGTC 5 cut(s) 559, 804, 960, 998, 1451
Psp124BI GAGCTC 2 cut(s) 35, 599
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 155
PspXI VCTCGAGB 1 cut(s) 987
PstNI CAGNNNCTG 1 cut(s) 1226
RsaI GTAC 2 cut(s) 185, 714
RsaNI GTAC 2 cut(s) 184, 713
RseI CAYNNNNRTG 3 cut(s) 225, 371, 1332
SacI GAGCTC 2 cut(s) 35, 599
SaqAI TTAA 4 cut(s) 449, 648, 930, 1310
SatI GCNGC 2 cut(s) 675, 939
Sau3AI GATC 4 cut(s) 702, 954, 1146, 1274
Sau96I GGNCC 1 cut(s) 155
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 5 cut(s) 559, 804, 960, 999, 1451
SduI GDGCHC 5 cut(s) 35, 599, 986, 1347, 1369
SfaNI GCATC 3 cut(s) 579, 1024, 1158
SfcI CTRYAG 1 cut(s) 1440
Sfr274I CTCGAG 1 cut(s) 987
SlaI CTCGAG 1 cut(s) 987
SmiMI CAYNNNNRTG 3 cut(s) 225, 371, 1332
SmlI CTYRAG 2 cut(s) 28, 987
SmoI CTYRAG 2 cut(s) 28, 987
SpeI ACTAGT 1 cut(s) 400
Sse9I AATT 6 cut(s) 494, 649, 685, 860, 1001, 1293
SseBI AGGCCT 2 cut(s) 768, 782
SsiI CCGC 1 cut(s) 429
SspMI CTAG 4 cut(s) 149, 401, 458, 1352
SstI GAGCTC 2 cut(s) 35, 599
StuI AGGCCT 2 cut(s) 768, 782
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 3 cut(s) 183, 1032, 1465
TaiI ACGT 2 cut(s) 471, 505
TaqI TCGA 5 cut(s) 305, 773, 988, 995, 1149
TasI AATT 6 cut(s) 494, 649, 685, 860, 1001, 1293
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 5 cut(s) 43, 441, 555, 603, 1356
Tru1I TTAA 4 cut(s) 449, 648, 930, 1310
Tru9I TTAA 4 cut(s) 449, 648, 930, 1310
TscAI CASTG 7 cut(s) 338, 548, 684, 918, 1072, 1214, 1231
TseFI GTSAC 2 cut(s) 274, 1386
TseI GCWGC 2 cut(s) 674, 938
Tsp45I GTSAC 2 cut(s) 274, 1386
TspDTI ATGAA 4 cut(s) 732, 1014, 1149, 1473
TspGWI ACGGA 1 cut(s) 810
TspRI CASTG 7 cut(s) 338, 548, 684, 918, 1072, 1214, 1231
VneI GTGCAC 1 cut(s) 1365
XapI RAATTY 3 cut(s) 494, 685, 1293
XceI RCATGY 1 cut(s) 376
XhoI CTCGAG 1 cut(s) 987
XmnI GAANNNNTTC 1 cut(s) 101
XspI CTAG 4 cut(s) 149, 401, 458, 1352
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.