Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015109

Physical Location & Seq

Genomic Coordinates Forward (+)

9647436 .. 9650516

Gene Structure 3081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g16890.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGAGAGAGAAGACAACAGTTCATCCTTGAGCTCACCATTGATTCCTGTTTGTGAAGAAGATGAAGAGAGAAGCCATGAGAAGTGGTTCAAAAGAGAGGAAGTTGTGGAAGAAGTGAAGAGGCAGTTATGGCTAGCAGGGCCTCTTATATGTGTGAGTATATTACAGTACTCTATTCAGATCATAGCCGTCATGTTTGTAGGTCATCTCGGTGAGTTATCTTTATCTGGTGCTACCATGGCGCTTTCCTTCACATCAGTCACTGGTTTCAGCTTGCTTATGGGAATGTCGAGTGCACTGGATACATTCTCTGGGCAGTGCTATGGTGCAAAGCAATATCATATGATGGGCATACACATGCAGAGAGCAATGTTTGTTCTTTTACTTGTGTGCATACCCCTCGCTATCATTTCGGCCAACACAAGAATCATCTTAATAGCTCTAGGCCAAGATGCTGACATATCTACCGAAGCTGGAAAATTTGCACGCTTCAACATCCCTTCGCTTTTTGCATATGCTCTTCTTCAGTGTCTTGTTAGATTTTTACAGACTCAAAACATTGTATTTCCAATGATGCTGAGCTCTGGGATCACCACTTTACTGCATATTCCACTCTGTTGGCTTCTTGTGTTTAAATCTGGACTTGGAAGCAGGGGAGCCGCACTGGCAAATTCCATCTCTTATTGGATCAATGTGCTACTTTTGGTGCTTTATGTCAGGTTCTCTTCAACATGCGCAAAAACTTGGACAGGCCTTTCGAAGGAGGCCTTTCAAAATGTTGCTACATTTCTTAGACTCGCTATTCCATCAGCTGTCATGGTCTGCTTGGAAATGTGGTCATTTGAATTGATTGTTCTTCTATCTGGTCTTCTTCCTAACCCAAAGTTGGAGACCTCAGTGCTTTCTATCAGCCTTAATACAGCAGCAATGGTTTGGATGATCCCTTTCGGACTCAGTTCTGCTGTGAGCACTCGAGTCTCAAATGAATTAGGAGCAGGGCATCCTAAAACAGCACGGTTATCAGTATGTGTCGTCATGGTCATGGCCATTACCGAAGGTTTATTGGTGGGATTAGTCCTAATACTAATACGCAACTTCTGGGGATACGCTTATAGCAATGAAACAGAAGTGGTCGATTATCTGGCAACCATGATGCCAATACTTGCTACATCCAACTTCTTGGATGGTCTCCAGTGTGTTCTTTCAGGCACTGCAAGAGGATGTGGGTGGCAGAAGATTGGAGCATATGTCAATCTTGGGTCATATTATTTGGTTGGAATTCCATTGGCTGTTTTAATGGCATTTTTCTTGCACATTGGTGGAAAGGGGCTCTGGCTGGGAATCATATGCGCTCTTATTGTGCAAGTGTTGTCACTTCTTACTATAACCATACGAACCAACTGGGAGAAAGAGGCTAAACAAGCTACAGAAAGAGTATATGACTCGACAGTTCCAGATGACATTGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

491

Amino Acids

53.73

Weight (kDa)

6.19

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	1 - 115	7e-24	MatE
MatE	PF01554	176 - 339	1.4e-30	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52450
fragaria_vesca	FvH4_5g16890 FvH4_5g16890
malus_domestica	MD06G1222800.v1.1
prunus_persica	Prupe.5G227700_v2.0.a1
pyrus_communis	pycom06g19860
rosa_chinensis	RchiOBHm_Chr7g0179161
rosa_laevigata	RLG00000005380
rosa_multiflora	Rmu_sc0000888.1_g000021
rosa_roxburghii	Rroxscaffold_3G00274250
rosa_rugosa	Rorug06G0421700
rosa_samantha	Rh7AG020600 Rh7BG020900 Rh7CG022000 Rh7DG021500
rosa_wichuraiana	Rw7G001740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	736
AciI	CCGC	1 cut(s)	660
AclWI	GGATC	3 cut(s)	596, 695, 934
AcoI	YGGCCR	2 cut(s)	414, 1044
AcsI	RAATTY	3 cut(s)	479, 670, 1278
AcuI	CTGAAG	1 cut(s)	509
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	760, 886
AgsI	TTSAA	5 cut(s)	91, 493, 729, 773, 845
AleI	CACNNNNGTG	1 cut(s)	1317
AluBI	AGCT	7 cut(s)	33, 273, 440, 473, 582, 812, 1424
AluI	AGCT	7 cut(s)	33, 273, 440, 473, 582, 812, 1424
Alw21I	GWGCWC	4 cut(s)	35, 298, 584, 971
Alw26I	GTCTC	3 cut(s)	884, 982, 1193
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	3 cut(s)	596, 695, 934
AlwNI	CAGNNNCTG	2 cut(s)	263, 1211
Ama87I	CYCGRG	1 cut(s)	972
AoxI	GGCC	6 cut(s)	140, 414, 445, 751, 765, 1044
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	923
ApoI	RAATTY	3 cut(s)	479, 670, 1278
ArsI	GACNNNNNNTTYG	2 cut(s)	739, 771
Asp700I	GAANNNNTTC	1 cut(s)	86
AspLEI	GCGC	3 cut(s)	244, 737, 1352
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	3 cut(s)	27, 224, 583
AsuII	TTCGAA	1 cut(s)	758
AsuNHI	GCTAGC	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	972
BaeGI	GKGCMC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	1046
BanII	GRGCYC	3 cut(s)	35, 584, 1332
BbsI	GAAGAC	2 cut(s)	18, 860
Bbv12I	GWGCWC	4 cut(s)	35, 298, 584, 971
BbvI	GCAGC	1 cut(s)	935
BccI	CCATC	4 cut(s)	340, 683, 814, 1178
BceAI	ACGGC	1 cut(s)	173
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciVI	GTATCC	2 cut(s)	295, 1097
BcoDI	GTCTC	3 cut(s)	884, 982, 1193
BfaI	CTAG	2 cut(s)	134, 443
BfmI	CTRYAG	1 cut(s)	1425
BfoI	RGCGCY	1 cut(s)	245
BfuI	GTATCC	2 cut(s)	295, 1097
BglI	GCCNNNNNGGC	1 cut(s)	665
BisI	GCNGC	2 cut(s)	660, 924
BlpI	GCTNAGC	1 cut(s)	578
BlsI	GCNGC	2 cut(s)	661, 925
BmcAI	AGTACT	1 cut(s)	170
BmeT110I	CYCGRG	1 cut(s)	972
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	658
BmrI	ACTGGG	1 cut(s)	1411
BmsI	GCATC	4 cut(s)	442, 564, 1009, 1143
BmtI	GCTAGC	1 cut(s)	137
BmuI	ACTGGG	1 cut(s)	1411
BpiI	GAAGAC	2 cut(s)	18, 860
BpmI	CTGGAG	1 cut(s)	1175
Bpu1102I	GCTNAGC	1 cut(s)	578
Bpu14I	TTCGAA	1 cut(s)	758
BpuEI	CTTGAG	1 cut(s)	49
BsaI	GGTCTC	2 cut(s)	884, 1193
BsaJI	CCNNGG	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	1233, 1263
Bsc4I	CCNNNNNNNGG	2 cut(s)	760, 886
Bse1I	ACTGG	5 cut(s)	268, 303, 669, 1192, 1406
Bse3DI	GCAATG	3 cut(s)	375, 933, 1123
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	7 cut(s)	23, 495, 942, 1000, 1169, 1189, 1226
BseLI	CCNNNNNNNGG	2 cut(s)	760, 886
BseMI	GCAATG	3 cut(s)	375, 933, 1123
BseMII	CTCAG	3 cut(s)	569, 909, 967
BseNI	ACTGG	5 cut(s)	268, 303, 669, 1192, 1406
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	935
BseYI	CCCAGC	1 cut(s)	1336
BshFI	GGCC	6 cut(s)	142, 416, 447, 753, 767, 1046
BsiHKAI	GWGCWC	4 cut(s)	35, 298, 584, 971
BsiHKCI	CYCGRG	1 cut(s)	972
BslI	CCNNNNNNNGG	2 cut(s)	760, 886
BsmAI	GTCTC	3 cut(s)	884, 982, 1193
BsnI	GGCC	6 cut(s)	142, 416, 447, 753, 767, 1046
Bso31I	GGTCTC	2 cut(s)	884, 1193
BsoBI	CYCGRG	1 cut(s)	972
Bsp119I	TTCGAA	1 cut(s)	758
Bsp1286I	GDGCHC	5 cut(s)	35, 298, 584, 971, 1332
Bsp143I	GATC	4 cut(s)	180, 588, 687, 939
Bsp1720I	GCTNAGC	1 cut(s)	578
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	1 cut(s)	660
BspANI	GGCC	6 cut(s)	142, 416, 447, 753, 767, 1046
BspCNI	CTCAG	3 cut(s)	570, 908, 966
BspHI	TCATGA	1 cut(s)	1469
BspLI	GGNNCC	1 cut(s)	658
BspOI	GCTAGC	1 cut(s)	137
BspPI	GGATC	3 cut(s)	596, 695, 934
BspQI	GCTCTTC	1 cut(s)	525
BspT104I	TTCGAA	1 cut(s)	758
BspTNI	GGTCTC	2 cut(s)	884, 1193
BsrDI	GCAATG	3 cut(s)	375, 933, 1123
BsrI	ACTGG	5 cut(s)	268, 303, 669, 1192, 1406
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	4 cut(s)	180, 588, 687, 939
BssT1I	CCWWGG	1 cut(s)	237
Bst4CI	ACNGT	4 cut(s)	20, 168, 1017, 1450
Bst6I	CTCTTC	4 cut(s)	60, 113, 525, 730
BstBI	TTCGAA	1 cut(s)	758
BstC8I	GCNNGC	3 cut(s)	135, 275, 487
BstDEI	CTNAG	4 cut(s)	578, 791, 895, 953
BstDSI	CCRYGG	1 cut(s)	237
BstENI	CCTNNNNNAGG	1 cut(s)	758
BstF5I	GGATG	7 cut(s)	23, 495, 942, 1000, 1169, 1189, 1226
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	3 cut(s)	244, 737, 1352
BstKTI	GATC	4 cut(s)	183, 591, 690, 942
BstMAI	GTCTC	3 cut(s)	884, 982, 1193
BstMBI	GATC	4 cut(s)	180, 588, 687, 939
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 139, 239, 665, 1421
BstNSI	RCATGY	2 cut(s)	361, 735
BstSFI	CTRYAG	1 cut(s)	1425
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	935
BstV2I	GAAGAC	2 cut(s)	18, 860
BstXI	CCANNNNNNTGG	2 cut(s)	618, 1180
BsuI	GTATCC	2 cut(s)	295, 1097
BsuRI	GGCC	6 cut(s)	142, 416, 447, 753, 767, 1046
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	7 cut(s)	23, 495, 942, 1000, 1169, 1189, 1226
BtsI	GCAGTG	2 cut(s)	323, 1209
BtsIMutI	CAGTG	8 cut(s)	261, 296, 323, 533, 662, 903, 1199, 1209
Cac8I	GCNNGC	3 cut(s)	135, 275, 487
CaiI	CAGNNNCTG	2 cut(s)	263, 1211
CciI	TCATGA	1 cut(s)	1469
CfoI	GCGC	3 cut(s)	244, 737, 1352
Cfr13I	GGNCC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	169
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	4 cut(s)	578, 791, 895, 953
DpnI	GATC	4 cut(s)	182, 590, 689, 941
DpnII	GATC	4 cut(s)	180, 588, 687, 939
DraI	TTTAAA	1 cut(s)	634
EaeI	YGGCCR	2 cut(s)	414, 1044
Eam1104I	CTCTTC	4 cut(s)	60, 113, 525, 730
EarI	CTCTTC	4 cut(s)	60, 113, 525, 730
Ecl136II	GAGCTC	2 cut(s)	33, 582
Eco130I	CCWWGG	1 cut(s)	237
Eco147I	AGGCCT	2 cut(s)	753, 767
Eco24I	GRGCYC	3 cut(s)	35, 584, 1332
Eco31I	GGTCTC	2 cut(s)	884, 1193
Eco53kI	GAGCTC	2 cut(s)	33, 582
Eco57I	CTGAAG	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	972
EcoICRI	GAGCTC	2 cut(s)	33, 582
EcoNI	CCTNNNNNAGG	1 cut(s)	758
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRI	GAATTC	1 cut(s)	1278
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	3 cut(s)	35, 584, 1332
ErhI	CCWWGG	1 cut(s)	237
FalI	AAGNNNNNCTT	2 cut(s)	752, 784
FauNDI	CATATG	4 cut(s)	342, 514, 1246, 1346
Fnu4HI	GCNGC	2 cut(s)	660, 924
FokI	GGATG	7 cut(s)	10, 482, 949, 987, 1156, 1196, 1233
FriOI	GRGCYC	3 cut(s)	35, 584, 1332
Fsp4HI	GCNGC	2 cut(s)	660, 924
FspBI	CTAG	2 cut(s)	134, 443
FspI	TGCGCA	1 cut(s)	736
GlaI	GCGC	3 cut(s)	243, 736, 1351
GluI	GCNGC	2 cut(s)	660, 924
GsaI	CCCAGC	1 cut(s)	1340
GsuI	CTGGAG	1 cut(s)	1175
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	6 cut(s)	142, 416, 447, 753, 767, 1046
HhaI	GCGC	3 cut(s)	244, 737, 1352
Hin6I	GCGC	3 cut(s)	242, 735, 1350
HinP1I	GCGC	3 cut(s)	242, 735, 1350
HinfI	GANTC	8 cut(s)	43, 426, 550, 795, 951, 975, 1341, 1442
HphI	GGTGA	3 cut(s)	27, 224, 583
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	2 cut(s)	180, 950
Hpy188III	TCNNGA	3 cut(s)	639, 1454, 1470
Hpy8I	GTNNAC	1 cut(s)	296
HpyAV	CCTTC	4 cut(s)	259, 510, 754, 1049
HpyCH4III	ACNGT	4 cut(s)	20, 168, 1017, 1450
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 139, 239, 665, 1421
HpyF3I	CTNAG	4 cut(s)	578, 791, 895, 953
HspAI	GCGC	3 cut(s)	242, 735, 1350
Kzo9I	GATC	4 cut(s)	180, 588, 687, 939
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	3 cut(s)	656, 992, 1241
Lsp1109I	GCAGC	1 cut(s)	935
LweI	GCATC	4 cut(s)	442, 564, 1009, 1143
MaeI	CTAG	2 cut(s)	134, 443
MaeIII	GTNAC	2 cut(s)	259, 1371
MalI	GATC	4 cut(s)	182, 590, 689, 941
MboI	GATC	4 cut(s)	180, 588, 687, 939
MhlI	GDGCHC	5 cut(s)	35, 298, 584, 971, 1332
MlsI	TGGCCA	1 cut(s)	1046
MluCI	AATT	5 cut(s)	479, 670, 845, 986, 1278
MluNI	TGGCCA	1 cut(s)	1046
MlyI	GAGTC	5 cut(s)	544, 789, 945, 984, 1436
MmeI	TCCRAC	3 cut(s)	867, 1197, 1255
MnlI	CCTC	8 cut(s)	91, 114, 153, 410, 757, 904, 1211, 1405
Mox20I	TGGCCA	1 cut(s)	1046
MroXI	GAANNNNTTC	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	1046
MseI	TTAA	4 cut(s)	434, 633, 915, 1295
MslI	CAYNNNNRTG	4 cut(s)	210, 356, 1040, 1317
Msp20I	TGGCCA	1 cut(s)	1046
MspA1I	CMGCKG	1 cut(s)	812
MwoI	GCNNNNNNNGC	5 cut(s)	130, 139, 239, 665, 1421
NcoI	CCATGG	1 cut(s)	237
NdeI	CATATG	4 cut(s)	342, 514, 1246, 1346
NdeII	GATC	4 cut(s)	180, 588, 687, 939
NheI	GCTAGC	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	658
NmuCI	GTSAC	2 cut(s)	259, 1371
NsbI	TGCGCA	1 cut(s)	736
NspI	RCATGY	2 cut(s)	361, 735
NspV	TTCGAA	1 cut(s)	758
OliI	CACNNNNGTG	1 cut(s)	1317
PaeR7I	CTCGAG	1 cut(s)	972
PagI	TCATGA	1 cut(s)	1469
PceI	AGGCCT	2 cut(s)	753, 767
PciSI	GCTCTTC	1 cut(s)	525
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	3 cut(s)	43, 426, 1341
PkrI	GCNGC	2 cut(s)	661, 925
PleI	GAGTC	5 cut(s)	544, 789, 945, 983, 1436
PpsI	GAGTC	5 cut(s)	544, 789, 945, 983, 1436
Psp124BI	GAGCTC	2 cut(s)	35, 584
PspFI	CCCAGC	1 cut(s)	1336
PspN4I	GGNNCC	1 cut(s)	658
PspPI	GGNCC	1 cut(s)	140
PspXI	VCTCGAGB	1 cut(s)	972
PstNI	CAGNNNCTG	2 cut(s)	263, 1211
PvuII	CAGCTG	1 cut(s)	812
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	4 cut(s)	210, 356, 1040, 1317
SacI	GAGCTC	2 cut(s)	35, 584
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	4 cut(s)	434, 633, 915, 1295
SatI	GCNGC	2 cut(s)	660, 924
Sau3AI	GATC	4 cut(s)	180, 588, 687, 939
Sau96I	GGNCC	1 cut(s)	140
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	5 cut(s)	544, 789, 945, 984, 1436
SduI	GDGCHC	5 cut(s)	35, 298, 584, 971, 1332
SfaNI	GCATC	4 cut(s)	442, 564, 1009, 1143
SfcI	CTRYAG	1 cut(s)	1425
Sfr274I	CTCGAG	1 cut(s)	972
SfuI	TTCGAA	1 cut(s)	758
SlaI	CTCGAG	1 cut(s)	972
SmiMI	CAYNNNNRTG	4 cut(s)	210, 356, 1040, 1317
SmlI	CTYRAG	2 cut(s)	28, 972
SmoI	CTYRAG	2 cut(s)	28, 972
Sse9I	AATT	5 cut(s)	479, 670, 845, 986, 1278
SseBI	AGGCCT	2 cut(s)	753, 767
SsiI	CCGC	1 cut(s)	660
SspMI	CTAG	2 cut(s)	134, 443
SstI	GAGCTC	2 cut(s)	35, 584
StuI	AGGCCT	2 cut(s)	753, 767
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	4 cut(s)	20, 168, 1017, 1450
TaqI	TCGA	5 cut(s)	290, 758, 973, 1134, 1445
TasI	AATT	5 cut(s)	479, 670, 845, 986, 1278
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	662
TfiI	GAWTC	3 cut(s)	43, 426, 1341
Tru1I	TTAA	4 cut(s)	434, 633, 915, 1295
Tru9I	TTAA	4 cut(s)	434, 633, 915, 1295
TscAI	CASTG	8 cut(s)	268, 303, 323, 533, 669, 903, 1199, 1216
TseFI	GTSAC	2 cut(s)	259, 1371
TseI	GCWGC	1 cut(s)	923
Tsp45I	GTSAC	2 cut(s)	259, 1371
TspDTI	ATGAA	5 cut(s)	12, 78, 999, 1134, 1458
TspRI	CASTG	8 cut(s)	268, 303, 323, 533, 669, 903, 1199, 1216
VneI	GTGCAC	1 cut(s)	294
XagI	CCTNNNNNAGG	1 cut(s)	758
XapI	RAATTY	3 cut(s)	479, 670, 1278
XceI	RCATGY	2 cut(s)	361, 735
XhoI	CTCGAG	1 cut(s)	972
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	2 cut(s)	134, 443
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.