AT5G53180

polypyrimidine tract-binding protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
21568131 .. 21571904
3774 bp
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UTR
Exon/CDS
Intron
AT5G53180.2

Sequence Viewer

Length: 1290 bp
ATGTCTTCTGTTTCAAGCCAGCCACAGTTTCGTTACACGCAACCTCCTTCAAAGGTTCTTCATTTGAGAAACTTGCCATGGGAATGCACTGAAGAGGAGTTAATTGAACTCGGAAAGCCTTTTGGTACTGTTGTTAATACAAAATGCAATGTTGGAGCTAATCGAAATCAAGCTTTCATTGAGTTTGAAGATTTGAATCAAGCTATACAAATGATATCTTACTATGCTTCTTCTTCGGAGCCTGCTCAAGTTCGTGGTAAAACTGTCTACCTCCAGTACTCCAACAGGCAAGAGATAGTGAACAACAAAACGACAGCGGATGTTGTGGGGAATGTTCTTCTGGTGACTATCGAAGGCGATGATGCTCGTATGGTCAGCATTGATGTCTTGCATCTGGTATTCTCAGCATTTGGGTTTGTCCACAAGATTACTACTTTCGAGAAGACAGCCGGATACCAAGCACTGGTTCAATTTACTGATGCAGAAACTGCAACCGCTGCAAAACTTGCCCTCGATGGAAGAAGCATCCCTAGGTATCTACTCGCTGAGACCGTGGGACAATGCTCACTTAAAATCACATATTCAGCTCATACAGATCTGACTGTCAAATTTCAGAGTCATCGGAGCAGGGACTATACTAATCCTTACCTTCCCGTTGCTCCATCAGCCATTGATAGTACTGGTCAGGTGGCTGTGGGTGTAGACGGGAAGAAGATGGAACCTGAAAGTAATGTTCTTCTCGCATCTATTGAAAACATGCAGTATGCAGTAACCTTGGATGTTTTACACATGGTTTTTGCGGCTTTTGGGGAAGTTCAAAAGATTGCAATGTTTGACAAGAATGGTGGGGTACAGGCACTGATCCAATACTCAGATGTTCAAACGGCTGTGGTGGCGAAGGAAGCATTGGAAGGACATTGTATCTACGATGGTGGTTTTTGTAAGCTCCACATTACTTATTCACGCCACACCGACCTCAGCATAAAGGTGAACAACGATAGAAGCAGAGACTACACAATGCCCAACCCACCGGTTCCAATGCCTCAACAACCCGTTCAGAATCCATACGCCGGCAATCCACAGCAATACCACGCAGCAGGTGGGAGCCACCACCAGCAGCAGCAGCAGCCACAAGGTGGATGGGTCCAACCAGGAGGGCAAGGCTCTATGGGAATGGGTGGTGGTGGTCACAATCATTACATGGCACCACCATCTTCAAGCTCAATGCATCAAGGTCCGGGTGGTCATATGCCTCCACAGCATTATGGTGGTCCTGGTCCAATGCATTAG

Protein Analysis

429

Amino Acids

46.88

Weight (kDa)

6.21

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_5 PF13893 132 - 228 3.2e-07 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_8 PF11835 143 - 221 2.6e-08 RRM-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1088
Acc36I ACCTGC 1 cut(s) 1088
AccB1I GGYRCC 1 cut(s) 1204
AccB7I CCANNNNNTGG 2 cut(s) 463, 1136
AccI GTMKAC 2 cut(s) 267, 702
AciI CCGC 3 cut(s) 317, 495, 800
AclWI GGATC 1 cut(s) 856
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 1136
AfaI GTAC 4 cut(s) 127, 278, 679, 852
AfiI CCNNNNNNNGG 3 cut(s) 463, 1070, 1136
AgeI ACCGGT 1 cut(s) 1030
AjnI CCWGG 2 cut(s) 1150, 1273
AjuI GAANNNNNNNTTGG 4 cut(s) 450, 482, 890, 922
AluBI AGCT 6 cut(s) 158, 173, 203, 587, 946, 1221
AluI AGCT 6 cut(s) 158, 173, 203, 587, 946, 1221
Alw26I GTCTC 2 cut(s) 542, 1002
AlwI GGATC 1 cut(s) 856
AlwNI CAGNNNCTG 2 cut(s) 488, 859
ApeKI GCWGC 6 cut(s) 497, 1094, 1117, 1120, 1123, 1126
ApoI RAATTY 1 cut(s) 608
AsiGI ACCGGT 1 cut(s) 1030
AspA2I CCTAGG 1 cut(s) 530
AspS9I GGNCC 4 cut(s) 1144, 1235, 1271, 1277
AsuC2I CCSGG 1 cut(s) 1239
AsuHPI GGTGA 2 cut(s) 355, 1000
AvaII GGWCC 4 cut(s) 1144, 1235, 1271, 1277
AvrII CCTAGG 1 cut(s) 530
BaeI ACNNNNGTAYC 2 cut(s) 117, 150
BanI GGYRCC 1 cut(s) 1204
BbsI GAAGAC 1 cut(s) 449
BbvCI CCTCAGC 1 cut(s) 977
BbvI GCAGC 6 cut(s) 484, 1106, 1129, 1132, 1135, 1138
BccI CCATC 6 cut(s) 509, 670, 709, 923, 1134, 1219
BceAI ACGGC 1 cut(s) 900
BciT130I CCWGG 2 cut(s) 1152, 1275
BciVI GTATCC 1 cut(s) 446
BcnI CCSGG 1 cut(s) 1239
BcoDI GTCTC 2 cut(s) 542, 1002
BfaI CTAG 1 cut(s) 531
BfuAI ACCTGC 1 cut(s) 1088
BfuI GTATCC 1 cut(s) 446
BglII AGATCT 1 cut(s) 595
BisI GCNGC 7 cut(s) 498, 801, 1095, 1118, 1121, 1124, 1127
BlnI CCTAGG 1 cut(s) 530
BlsI GCNGC 7 cut(s) 499, 802, 1096, 1119, 1122, 1125, 1128
BmcAI AGTACT 2 cut(s) 278, 679
Bme1390I CCNGG 3 cut(s) 1152, 1239, 1275
Bme18I GGWCC 4 cut(s) 1144, 1235, 1271, 1277
BmgT120I GGNCC 4 cut(s) 1144, 1235, 1271, 1277
BmiI GGNNCC 6 cut(s) 240, 720, 1035, 1106, 1145, 1206
BmrFI CCNGG 3 cut(s) 1152, 1239, 1275
BmsI GCATC 6 cut(s) 352, 400, 469, 534, 752, 1237
BpiI GAAGAC 1 cut(s) 449
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 977
BpuEI CTTGAG 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 1239
BsaBI GATNNNNATC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 4 cut(s) 77, 530, 552, 774
BsaWI WCCGGW 1 cut(s) 1030
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 3 cut(s) 463, 1070, 1136
Bse118I RCCGGY 2 cut(s) 1030, 1070
Bse1I ACTGG 3 cut(s) 274, 468, 685
Bse3DI GCAATG 2 cut(s) 154, 834
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 2 cut(s) 1152, 1275
BseDI CCNNGG 4 cut(s) 77, 530, 552, 774
BseGI GGATG 4 cut(s) 325, 525, 784, 1145
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 3 cut(s) 463, 1070, 1136
BseMI GCAATG 2 cut(s) 154, 834
BseMII CTCAG 4 cut(s) 417, 537, 885, 991
BseNI ACTGG 3 cut(s) 274, 468, 685
BseRI GAGGAG 1 cut(s) 110
BseXI GCAGC 6 cut(s) 484, 1106, 1129, 1132, 1135, 1138
BshNI GGYRCC 1 cut(s) 1204
BshTI ACCGGT 1 cut(s) 1030
BsiSI CCGG 4 cut(s) 450, 1031, 1071, 1238
BslFI GGGAC 2 cut(s) 570, 644
BslI CCNNNNNNNGG 3 cut(s) 463, 1070, 1136
BsmAI GTCTC 2 cut(s) 542, 1002
BsmFI GGGAC 2 cut(s) 570, 644
BsmI GAATGC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 542
Bsp143I GATC 2 cut(s) 595, 861
Bsp19I CCATGG 1 cut(s) 77
BspACI CCGC 3 cut(s) 317, 495, 800
BspCNI CTCAG 4 cut(s) 416, 538, 884, 990
BspLI GGNNCC 6 cut(s) 240, 720, 1035, 1106, 1145, 1206
BspMI ACCTGC 1 cut(s) 1088
BspPI GGATC 1 cut(s) 856
BspT107I GGYRCC 1 cut(s) 1204
BspTNI GGTCTC 1 cut(s) 542
BsrDI GCAATG 2 cut(s) 154, 834
BsrFI RCCGGY 2 cut(s) 1030, 1070
BsrI ACTGG 3 cut(s) 274, 468, 685
BssAI RCCGGY 2 cut(s) 1030, 1070
BssECI CCNNGG 4 cut(s) 77, 530, 552, 774
BssMI GATC 2 cut(s) 595, 861
BssT1I CCWWGG 3 cut(s) 77, 530, 774
Bst2UI CCWGG 2 cut(s) 1152, 1275
Bst4CI ACNGT 5 cut(s) 27, 130, 265, 553, 604
Bst6I CTCTTC 1 cut(s) 87
BstAPI GCANNNNNTGC 3 cut(s) 488, 497, 506
BstC8I GCNNGC 3 cut(s) 20, 243, 1072
BstDEI CTNAG 4 cut(s) 403, 546, 871, 977
BstDSI CCRYGG 2 cut(s) 77, 552
BstF5I GGATG 4 cut(s) 325, 525, 784, 1145
BstKTI GATC 2 cut(s) 598, 864
BstMAI GTCTC 2 cut(s) 542, 1002
BstMBI GATC 2 cut(s) 595, 861
BstMWI GCNNNNNNNGC 9 cut(s) 488, 497, 506, 665, 893, 902, 1123, 1126, 1258
BstNI CCWGG 2 cut(s) 1152, 1275
BstNSI RCATGY 1 cut(s) 760
BstSCI CCNGG 3 cut(s) 1150, 1237, 1273
BstV1I GCAGC 6 cut(s) 484, 1106, 1129, 1132, 1135, 1138
BstV2I GAAGAC 1 cut(s) 449
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BsuI GTATCC 1 cut(s) 446
BtgI CCRYGG 2 cut(s) 77, 552
BtgZI GCGATG 1 cut(s) 372
BtsCI GGATG 4 cut(s) 325, 525, 784, 1145
BtsIMutI CAGTG 3 cut(s) 87, 461, 857
BveI ACCTGC 1 cut(s) 1088
Cac8I GCNNGC 3 cut(s) 20, 243, 1072
CaiI CAGNNNCTG 2 cut(s) 488, 859
Cfr10I RCCGGY 2 cut(s) 1030, 1070
Cfr13I GGNCC 4 cut(s) 1144, 1235, 1271, 1277
Csp6I GTAC 4 cut(s) 126, 277, 678, 851
CspAI ACCGGT 1 cut(s) 1030
CspCI CAANNNNNGTGG 2 cut(s) 826, 861
CviAII CATG 4 cut(s) 78, 757, 790, 1201
CviQI GTAC 4 cut(s) 126, 277, 678, 851
DdeI CTNAG 4 cut(s) 403, 546, 871, 977
DpnI GATC 2 cut(s) 597, 863
DpnII GATC 2 cut(s) 595, 861
DraIII CACNNNGTG 1 cut(s) 1136
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 3 cut(s) 77, 530, 774
Eco31I GGTCTC 1 cut(s) 542
Eco32I GATATC 1 cut(s) 216
Eco47I GGWCC 4 cut(s) 1144, 1235, 1271, 1277
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 1150, 1273
EcoRV GATATC 1 cut(s) 216
EcoT14I CCWWGG 3 cut(s) 77, 530, 774
EcoT22I ATGCAT 2 cut(s) 1230, 1287
ErhI CCWWGG 3 cut(s) 77, 530, 774
FaeI CATG 4 cut(s) 81, 760, 793, 1204
FaqI GGGAC 2 cut(s) 570, 644
FatI CATG 4 cut(s) 77, 756, 789, 1200
FauNDI CATATG 1 cut(s) 1248
FblI GTMKAC 2 cut(s) 267, 702
Fnu4HI GCNGC 7 cut(s) 498, 801, 1095, 1118, 1121, 1124, 1127
FokI GGATG 4 cut(s) 332, 512, 791, 1152
Fsp4HI GCNGC 7 cut(s) 498, 801, 1095, 1118, 1121, 1124, 1127
FspBI CTAG 1 cut(s) 531
GluI GCNGC 7 cut(s) 498, 801, 1095, 1118, 1121, 1124, 1127
GsuI CTGGAG 1 cut(s) 257
HapII CCGG 4 cut(s) 450, 1031, 1071, 1238
Hin1II CATG 4 cut(s) 81, 760, 793, 1204
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 3 cut(s) 196, 616, 1060
HpaII CCGG 4 cut(s) 450, 1031, 1071, 1238
HphI GGTGA 2 cut(s) 355, 1000
Hpy166II GTNNAC 5 cut(s) 268, 301, 421, 703, 991
Hpy188I TCNGA 7 cut(s) 113, 238, 600, 615, 624, 874, 1059
Hpy188III TCNNGA 1 cut(s) 439
Hpy8I GTNNAC 5 cut(s) 268, 301, 421, 703, 991
HpyAV CCTTC 5 cut(s) 57, 347, 659, 892, 905
HpyCH4III ACNGT 5 cut(s) 27, 130, 265, 553, 604
HpyF10VI GCNNNNNNNGC 9 cut(s) 488, 497, 506, 665, 893, 902, 1123, 1126, 1258
HpyF3I CTNAG 4 cut(s) 403, 546, 871, 977
Hsp92II CATG 4 cut(s) 81, 760, 793, 1204
KroI GCCGGC 1 cut(s) 1070
KroNI GCCGGC 1 cut(s) 1072
Kzo9I GATC 2 cut(s) 595, 861
LmnI GCTCC 6 cut(s) 155, 238, 624, 664, 951, 1104
Lsp1109I GCAGC 6 cut(s) 484, 1106, 1129, 1132, 1135, 1138
LweI GCATC 6 cut(s) 352, 400, 469, 534, 752, 1237
MaeI CTAG 1 cut(s) 531
MaeIII GTNAC 4 cut(s) 32, 343, 769, 1187
MalI GATC 2 cut(s) 597, 863
MboI GATC 2 cut(s) 595, 861
MflI RGATCY 1 cut(s) 595
MluCI AATT 3 cut(s) 102, 470, 608
MlyI GAGTC 1 cut(s) 625
MmeI TCCRAC 3 cut(s) 133, 306, 1171
MnlI CCTC 8 cut(s) 54, 88, 281, 521, 986, 1053, 1148, 1263
Mph1103I ATGCAT 2 cut(s) 1230, 1287
MroNI GCCGGC 1 cut(s) 1070
MseI TTAA 3 cut(s) 101, 135, 570
MslI CAYNNNNRTG 3 cut(s) 82, 986, 1266
MspA1I CMGCKG 2 cut(s) 317, 497
MspI CCGG 4 cut(s) 450, 1031, 1071, 1238
MspR9I CCNGG 3 cut(s) 1152, 1239, 1275
Mva1269I GAATGC 1 cut(s) 89
MvaI CCWGG 2 cut(s) 1152, 1275
MwoI GCNNNNNNNGC 9 cut(s) 488, 497, 506, 665, 893, 902, 1123, 1126, 1258
NaeI GCCGGC 1 cut(s) 1072
NciI CCSGG 1 cut(s) 1239
NcoI CCATGG 1 cut(s) 77
NdeI CATATG 1 cut(s) 1248
NdeII GATC 2 cut(s) 595, 861
NgoMIV GCCGGC 1 cut(s) 1070
NlaIII CATG 4 cut(s) 81, 760, 793, 1204
NlaIV GGNNCC 6 cut(s) 240, 720, 1035, 1106, 1145, 1206
NmuCI GTSAC 2 cut(s) 343, 1187
NsiI ATGCAT 2 cut(s) 1230, 1287
NspI RCATGY 1 cut(s) 760
PaqCI CACCTGC 1 cut(s) 1088
PcsI WCGNNNNNNNCGW 1 cut(s) 549
PctI GAATGC 1 cut(s) 89
PdiI GCCGGC 1 cut(s) 1072
PfeI GAWTC 2 cut(s) 196, 1060
PflMI CCANNNNNTGG 2 cut(s) 463, 1136
PinAI ACCGGT 1 cut(s) 1030
PkrI GCNGC 7 cut(s) 499, 802, 1096, 1119, 1122, 1125, 1128
PleI GAGTC 1 cut(s) 624
PpsI GAGTC 1 cut(s) 624
Psp6I CCWGG 2 cut(s) 1150, 1273
PspGI CCWGG 2 cut(s) 1150, 1273
PspN4I GGNNCC 6 cut(s) 240, 720, 1035, 1106, 1145, 1206
PspPI GGNCC 4 cut(s) 1144, 1235, 1271, 1277
PstNI CAGNNNCTG 2 cut(s) 488, 859
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 4 cut(s) 127, 278, 679, 852
RsaNI GTAC 4 cut(s) 126, 277, 678, 851
RseI CAYNNNNRTG 3 cut(s) 82, 986, 1266
SaqAI TTAA 3 cut(s) 101, 135, 570
SatI GCNGC 7 cut(s) 498, 801, 1095, 1118, 1121, 1124, 1127
Sau3AI GATC 2 cut(s) 595, 861
Sau96I GGNCC 4 cut(s) 1144, 1235, 1271, 1277
ScaI AGTACT 2 cut(s) 278, 679
SchI GAGTC 1 cut(s) 625
ScrFI CCNGG 3 cut(s) 1152, 1239, 1275
SfaNI GCATC 6 cut(s) 352, 400, 469, 534, 752, 1237
SinI GGWCC 4 cut(s) 1144, 1235, 1271, 1277
SmiMI CAYNNNNRTG 3 cut(s) 82, 986, 1266
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 3 cut(s) 102, 470, 608
SsiI CCGC 3 cut(s) 317, 495, 800
SspMI CTAG 1 cut(s) 531
StyD4I CCNGG 3 cut(s) 1150, 1237, 1273
StyI CCWWGG 3 cut(s) 77, 530, 774
TaaI ACNGT 5 cut(s) 27, 130, 265, 553, 604
TaqI TCGA 4 cut(s) 163, 351, 438, 513
TasI AATT 3 cut(s) 102, 470, 608
TatI WGTACW 2 cut(s) 276, 677
TauI GCSGC 1 cut(s) 803
TfiI GAWTC 2 cut(s) 196, 1060
Tru1I TTAA 3 cut(s) 101, 135, 570
Tru9I TTAA 3 cut(s) 101, 135, 570
TscAI CASTG 3 cut(s) 94, 468, 864
TseFI GTSAC 2 cut(s) 343, 1187
TseI GCWGC 6 cut(s) 497, 1094, 1117, 1120, 1123, 1126
Tsp45I GTSAC 2 cut(s) 343, 1187
TspDTI ATGAA 2 cut(s) 50, 166
TspRI CASTG 3 cut(s) 94, 468, 864
Van91I CCANNNNNTGG 2 cut(s) 463, 1136
VpaK11BI GGWCC 4 cut(s) 1144, 1235, 1271, 1277
XapI RAATTY 1 cut(s) 608
XceI RCATGY 1 cut(s) 760
XcmI CCANNNNNNNNNTGG 2 cut(s) 1097, 1137
XmaJI CCTAGG 1 cut(s) 530
XmiI GTMKAC 2 cut(s) 267, 702
XspI CTAG 1 cut(s) 531
ZrmI AGTACT 2 cut(s) 278, 679
Zsp2I ATGCAT 2 cut(s) 1230, 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.