polypyrimidine tract-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G53180 AT5G53180 AT5G53180 AT5G53180 AT5G53180 AT5G53180 |
| fragaria_vesca | FvH4_7g31120 |
| malus_domestica | MD01G1216000.v1.1 MD07G1285900.v1.1 |
| prunus_persica | Prupe.2G308000_v2.0.a1 |
| pyrus_communis | pycom01g22680 pycom07g25930 |
| rosa_chinensis | RchiOBHm_Chr1g0380181 |
| rosa_laevigata | RLG00000026322 |
| rosa_multiflora | Rmu_co8519101.1_g000001 Rmu_sc0001232.1_g000021 Rmu_sc0016989.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00279590 |
| rosa_rugosa | Rorug01G0418700 |
| rosa_samantha | Rh1AG443600 Rh1BG398500 Rh1CG411900 Rh1DG429200 |
| rosa_wichuraiana | Rw1G038520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1088 |
| Acc36I | ACCTGC | 1 cut(s) | 1088 |
| AccB1I | GGYRCC | 1 cut(s) | 1204 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 463, 1136 |
| AccI | GTMKAC | 2 cut(s) | 267, 702 |
| AciI | CCGC | 3 cut(s) | 317, 495, 800 |
| AclWI | GGATC | 1 cut(s) | 856 |
| AcsI | RAATTY | 1 cut(s) | 608 |
| AcuI | CTGAAG | 1 cut(s) | 111 |
| AdeI | CACNNNGTG | 1 cut(s) | 1136 |
| AfaI | GTAC | 4 cut(s) | 127, 278, 679, 852 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 463, 1070, 1136 |
| AgeI | ACCGGT | 1 cut(s) | 1030 |
| AjnI | CCWGG | 2 cut(s) | 1150, 1273 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 450, 482, 890, 922 |
| AluBI | AGCT | 6 cut(s) | 158, 173, 203, 587, 946, 1221 |
| AluI | AGCT | 6 cut(s) | 158, 173, 203, 587, 946, 1221 |
| Alw26I | GTCTC | 2 cut(s) | 542, 1002 |
| AlwI | GGATC | 1 cut(s) | 856 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 488, 859 |
| ApeKI | GCWGC | 6 cut(s) | 497, 1094, 1117, 1120, 1123, 1126 |
| ApoI | RAATTY | 1 cut(s) | 608 |
| AsiGI | ACCGGT | 1 cut(s) | 1030 |
| AspA2I | CCTAGG | 1 cut(s) | 530 |
| AspS9I | GGNCC | 4 cut(s) | 1144, 1235, 1271, 1277 |
| AsuC2I | CCSGG | 1 cut(s) | 1239 |
| AsuHPI | GGTGA | 2 cut(s) | 355, 1000 |
| AvaII | GGWCC | 4 cut(s) | 1144, 1235, 1271, 1277 |
| AvrII | CCTAGG | 1 cut(s) | 530 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 117, 150 |
| BanI | GGYRCC | 1 cut(s) | 1204 |
| BbsI | GAAGAC | 1 cut(s) | 449 |
| BbvCI | CCTCAGC | 1 cut(s) | 977 |
| BbvI | GCAGC | 6 cut(s) | 484, 1106, 1129, 1132, 1135, 1138 |
| BccI | CCATC | 6 cut(s) | 509, 670, 709, 923, 1134, 1219 |
| BceAI | ACGGC | 1 cut(s) | 900 |
| BciT130I | CCWGG | 2 cut(s) | 1152, 1275 |
| BciVI | GTATCC | 1 cut(s) | 446 |
| BcnI | CCSGG | 1 cut(s) | 1239 |
| BcoDI | GTCTC | 2 cut(s) | 542, 1002 |
| BfaI | CTAG | 1 cut(s) | 531 |
| BfuAI | ACCTGC | 1 cut(s) | 1088 |
| BfuI | GTATCC | 1 cut(s) | 446 |
| BglII | AGATCT | 1 cut(s) | 595 |
| BisI | GCNGC | 7 cut(s) | 498, 801, 1095, 1118, 1121, 1124, 1127 |
| BlnI | CCTAGG | 1 cut(s) | 530 |
| BlsI | GCNGC | 7 cut(s) | 499, 802, 1096, 1119, 1122, 1125, 1128 |
| BmcAI | AGTACT | 2 cut(s) | 278, 679 |
| Bme1390I | CCNGG | 3 cut(s) | 1152, 1239, 1275 |
| Bme18I | GGWCC | 4 cut(s) | 1144, 1235, 1271, 1277 |
| BmgT120I | GGNCC | 4 cut(s) | 1144, 1235, 1271, 1277 |
| BmiI | GGNNCC | 6 cut(s) | 240, 720, 1035, 1106, 1145, 1206 |
| BmrFI | CCNGG | 3 cut(s) | 1152, 1239, 1275 |
| BmsI | GCATC | 6 cut(s) | 352, 400, 469, 534, 752, 1237 |
| BpiI | GAAGAC | 1 cut(s) | 449 |
| BpmI | CTGGAG | 1 cut(s) | 257 |
| Bpu10I | CCTNAGC | 1 cut(s) | 977 |
| BpuEI | CTTGAG | 1 cut(s) | 231 |
| BpuMI | CCSGG | 1 cut(s) | 1239 |
| BsaBI | GATNNNNATC | 1 cut(s) | 195 |
| BsaI | GGTCTC | 1 cut(s) | 542 |
| BsaJI | CCNNGG | 4 cut(s) | 77, 530, 552, 774 |
| BsaWI | WCCGGW | 1 cut(s) | 1030 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 28, 58 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 463, 1070, 1136 |
| Bse118I | RCCGGY | 2 cut(s) | 1030, 1070 |
| Bse1I | ACTGG | 3 cut(s) | 274, 468, 685 |
| Bse3DI | GCAATG | 2 cut(s) | 154, 834 |
| Bse8I | GATNNNNATC | 1 cut(s) | 195 |
| BseBI | CCWGG | 2 cut(s) | 1152, 1275 |
| BseDI | CCNNGG | 4 cut(s) | 77, 530, 552, 774 |
| BseGI | GGATG | 4 cut(s) | 325, 525, 784, 1145 |
| BseJI | GATNNNNATC | 1 cut(s) | 195 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 463, 1070, 1136 |
| BseMI | GCAATG | 2 cut(s) | 154, 834 |
| BseMII | CTCAG | 4 cut(s) | 417, 537, 885, 991 |
| BseNI | ACTGG | 3 cut(s) | 274, 468, 685 |
| BseRI | GAGGAG | 1 cut(s) | 110 |
| BseXI | GCAGC | 6 cut(s) | 484, 1106, 1129, 1132, 1135, 1138 |
| BshNI | GGYRCC | 1 cut(s) | 1204 |
| BshTI | ACCGGT | 1 cut(s) | 1030 |
| BsiSI | CCGG | 4 cut(s) | 450, 1031, 1071, 1238 |
| BslFI | GGGAC | 2 cut(s) | 570, 644 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 463, 1070, 1136 |
| BsmAI | GTCTC | 2 cut(s) | 542, 1002 |
| BsmFI | GGGAC | 2 cut(s) | 570, 644 |
| BsmI | GAATGC | 1 cut(s) | 89 |
| Bso31I | GGTCTC | 1 cut(s) | 542 |
| Bsp143I | GATC | 2 cut(s) | 595, 861 |
| Bsp19I | CCATGG | 1 cut(s) | 77 |
| BspACI | CCGC | 3 cut(s) | 317, 495, 800 |
| BspCNI | CTCAG | 4 cut(s) | 416, 538, 884, 990 |
| BspLI | GGNNCC | 6 cut(s) | 240, 720, 1035, 1106, 1145, 1206 |
| BspMI | ACCTGC | 1 cut(s) | 1088 |
| BspPI | GGATC | 1 cut(s) | 856 |
| BspT107I | GGYRCC | 1 cut(s) | 1204 |
| BspTNI | GGTCTC | 1 cut(s) | 542 |
| BsrDI | GCAATG | 2 cut(s) | 154, 834 |
| BsrFI | RCCGGY | 2 cut(s) | 1030, 1070 |
| BsrI | ACTGG | 3 cut(s) | 274, 468, 685 |
| BssAI | RCCGGY | 2 cut(s) | 1030, 1070 |
| BssECI | CCNNGG | 4 cut(s) | 77, 530, 552, 774 |
| BssMI | GATC | 2 cut(s) | 595, 861 |
| BssT1I | CCWWGG | 3 cut(s) | 77, 530, 774 |
| Bst2UI | CCWGG | 2 cut(s) | 1152, 1275 |
| Bst4CI | ACNGT | 5 cut(s) | 27, 130, 265, 553, 604 |
| Bst6I | CTCTTC | 1 cut(s) | 87 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 488, 497, 506 |
| BstC8I | GCNNGC | 3 cut(s) | 20, 243, 1072 |
| BstDEI | CTNAG | 4 cut(s) | 403, 546, 871, 977 |
| BstDSI | CCRYGG | 2 cut(s) | 77, 552 |
| BstF5I | GGATG | 4 cut(s) | 325, 525, 784, 1145 |
| BstKTI | GATC | 2 cut(s) | 598, 864 |
| BstMAI | GTCTC | 2 cut(s) | 542, 1002 |
| BstMBI | GATC | 2 cut(s) | 595, 861 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 488, 497, 506, 665, 893, 902, 1123, 1126, 1258 |
| BstNI | CCWGG | 2 cut(s) | 1152, 1275 |
| BstNSI | RCATGY | 1 cut(s) | 760 |
| BstSCI | CCNGG | 3 cut(s) | 1150, 1237, 1273 |
| BstV1I | GCAGC | 6 cut(s) | 484, 1106, 1129, 1132, 1135, 1138 |
| BstV2I | GAAGAC | 1 cut(s) | 449 |
| BstX2I | RGATCY | 1 cut(s) | 595 |
| BstYI | RGATCY | 1 cut(s) | 595 |
| BsuI | GTATCC | 1 cut(s) | 446 |
| BtgI | CCRYGG | 2 cut(s) | 77, 552 |
| BtgZI | GCGATG | 1 cut(s) | 372 |
| BtsCI | GGATG | 4 cut(s) | 325, 525, 784, 1145 |
| BtsIMutI | CAGTG | 3 cut(s) | 87, 461, 857 |
| BveI | ACCTGC | 1 cut(s) | 1088 |
| Cac8I | GCNNGC | 3 cut(s) | 20, 243, 1072 |
| CaiI | CAGNNNCTG | 2 cut(s) | 488, 859 |
| Cfr10I | RCCGGY | 2 cut(s) | 1030, 1070 |
| Cfr13I | GGNCC | 4 cut(s) | 1144, 1235, 1271, 1277 |
| Csp6I | GTAC | 4 cut(s) | 126, 277, 678, 851 |
| CspAI | ACCGGT | 1 cut(s) | 1030 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 826, 861 |
| CviAII | CATG | 4 cut(s) | 78, 757, 790, 1201 |
| CviQI | GTAC | 4 cut(s) | 126, 277, 678, 851 |
| DdeI | CTNAG | 4 cut(s) | 403, 546, 871, 977 |
| DpnI | GATC | 2 cut(s) | 597, 863 |
| DpnII | GATC | 2 cut(s) | 595, 861 |
| DraIII | CACNNNGTG | 1 cut(s) | 1136 |
| Eam1104I | CTCTTC | 1 cut(s) | 87 |
| EarI | CTCTTC | 1 cut(s) | 87 |
| Eco130I | CCWWGG | 3 cut(s) | 77, 530, 774 |
| Eco31I | GGTCTC | 1 cut(s) | 542 |
| Eco32I | GATATC | 1 cut(s) | 216 |
| Eco47I | GGWCC | 4 cut(s) | 1144, 1235, 1271, 1277 |
| Eco57I | CTGAAG | 1 cut(s) | 111 |
| EcoRII | CCWGG | 2 cut(s) | 1150, 1273 |
| EcoRV | GATATC | 1 cut(s) | 216 |
| EcoT14I | CCWWGG | 3 cut(s) | 77, 530, 774 |
| EcoT22I | ATGCAT | 2 cut(s) | 1230, 1287 |
| ErhI | CCWWGG | 3 cut(s) | 77, 530, 774 |
| FaeI | CATG | 4 cut(s) | 81, 760, 793, 1204 |
| FaqI | GGGAC | 2 cut(s) | 570, 644 |
| FatI | CATG | 4 cut(s) | 77, 756, 789, 1200 |
| FauNDI | CATATG | 1 cut(s) | 1248 |
| FblI | GTMKAC | 2 cut(s) | 267, 702 |
| Fnu4HI | GCNGC | 7 cut(s) | 498, 801, 1095, 1118, 1121, 1124, 1127 |
| FokI | GGATG | 4 cut(s) | 332, 512, 791, 1152 |
| Fsp4HI | GCNGC | 7 cut(s) | 498, 801, 1095, 1118, 1121, 1124, 1127 |
| FspBI | CTAG | 1 cut(s) | 531 |
| GluI | GCNGC | 7 cut(s) | 498, 801, 1095, 1118, 1121, 1124, 1127 |
| GsuI | CTGGAG | 1 cut(s) | 257 |
| HapII | CCGG | 4 cut(s) | 450, 1031, 1071, 1238 |
| Hin1II | CATG | 4 cut(s) | 81, 760, 793, 1204 |
| HindIII | AAGCTT | 1 cut(s) | 171 |
| HinfI | GANTC | 3 cut(s) | 196, 616, 1060 |
| HpaII | CCGG | 4 cut(s) | 450, 1031, 1071, 1238 |
| HphI | GGTGA | 2 cut(s) | 355, 1000 |
| Hpy166II | GTNNAC | 5 cut(s) | 268, 301, 421, 703, 991 |
| Hpy188I | TCNGA | 7 cut(s) | 113, 238, 600, 615, 624, 874, 1059 |
| Hpy188III | TCNNGA | 1 cut(s) | 439 |
| Hpy8I | GTNNAC | 5 cut(s) | 268, 301, 421, 703, 991 |
| HpyAV | CCTTC | 5 cut(s) | 57, 347, 659, 892, 905 |
| HpyCH4III | ACNGT | 5 cut(s) | 27, 130, 265, 553, 604 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 488, 497, 506, 665, 893, 902, 1123, 1126, 1258 |
| HpyF3I | CTNAG | 4 cut(s) | 403, 546, 871, 977 |
| Hsp92II | CATG | 4 cut(s) | 81, 760, 793, 1204 |
| KroI | GCCGGC | 1 cut(s) | 1070 |
| KroNI | GCCGGC | 1 cut(s) | 1072 |
| Kzo9I | GATC | 2 cut(s) | 595, 861 |
| LmnI | GCTCC | 6 cut(s) | 155, 238, 624, 664, 951, 1104 |
| Lsp1109I | GCAGC | 6 cut(s) | 484, 1106, 1129, 1132, 1135, 1138 |
| LweI | GCATC | 6 cut(s) | 352, 400, 469, 534, 752, 1237 |
| MaeI | CTAG | 1 cut(s) | 531 |
| MaeIII | GTNAC | 4 cut(s) | 32, 343, 769, 1187 |
| MalI | GATC | 2 cut(s) | 597, 863 |
| MboI | GATC | 2 cut(s) | 595, 861 |
| MflI | RGATCY | 1 cut(s) | 595 |
| MluCI | AATT | 3 cut(s) | 102, 470, 608 |
| MlyI | GAGTC | 1 cut(s) | 625 |
| MmeI | TCCRAC | 3 cut(s) | 133, 306, 1171 |
| MnlI | CCTC | 8 cut(s) | 54, 88, 281, 521, 986, 1053, 1148, 1263 |
| Mph1103I | ATGCAT | 2 cut(s) | 1230, 1287 |
| MroNI | GCCGGC | 1 cut(s) | 1070 |
| MseI | TTAA | 3 cut(s) | 101, 135, 570 |
| MslI | CAYNNNNRTG | 3 cut(s) | 82, 986, 1266 |
| MspA1I | CMGCKG | 2 cut(s) | 317, 497 |
| MspI | CCGG | 4 cut(s) | 450, 1031, 1071, 1238 |
| MspR9I | CCNGG | 3 cut(s) | 1152, 1239, 1275 |
| Mva1269I | GAATGC | 1 cut(s) | 89 |
| MvaI | CCWGG | 2 cut(s) | 1152, 1275 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 488, 497, 506, 665, 893, 902, 1123, 1126, 1258 |
| NaeI | GCCGGC | 1 cut(s) | 1072 |
| NciI | CCSGG | 1 cut(s) | 1239 |
| NcoI | CCATGG | 1 cut(s) | 77 |
| NdeI | CATATG | 1 cut(s) | 1248 |
| NdeII | GATC | 2 cut(s) | 595, 861 |
| NgoMIV | GCCGGC | 1 cut(s) | 1070 |
| NlaIII | CATG | 4 cut(s) | 81, 760, 793, 1204 |
| NlaIV | GGNNCC | 6 cut(s) | 240, 720, 1035, 1106, 1145, 1206 |
| NmuCI | GTSAC | 2 cut(s) | 343, 1187 |
| NsiI | ATGCAT | 2 cut(s) | 1230, 1287 |
| NspI | RCATGY | 1 cut(s) | 760 |
| PaqCI | CACCTGC | 1 cut(s) | 1088 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 549 |
| PctI | GAATGC | 1 cut(s) | 89 |
| PdiI | GCCGGC | 1 cut(s) | 1072 |
| PfeI | GAWTC | 2 cut(s) | 196, 1060 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 463, 1136 |
| PinAI | ACCGGT | 1 cut(s) | 1030 |
| PkrI | GCNGC | 7 cut(s) | 499, 802, 1096, 1119, 1122, 1125, 1128 |
| PleI | GAGTC | 1 cut(s) | 624 |
| PpsI | GAGTC | 1 cut(s) | 624 |
| Psp6I | CCWGG | 2 cut(s) | 1150, 1273 |
| PspGI | CCWGG | 2 cut(s) | 1150, 1273 |
| PspN4I | GGNNCC | 6 cut(s) | 240, 720, 1035, 1106, 1145, 1206 |
| PspPI | GGNCC | 4 cut(s) | 1144, 1235, 1271, 1277 |
| PstNI | CAGNNNCTG | 2 cut(s) | 488, 859 |
| PsuI | RGATCY | 1 cut(s) | 595 |
| RsaI | GTAC | 4 cut(s) | 127, 278, 679, 852 |
| RsaNI | GTAC | 4 cut(s) | 126, 277, 678, 851 |
| RseI | CAYNNNNRTG | 3 cut(s) | 82, 986, 1266 |
| SaqAI | TTAA | 3 cut(s) | 101, 135, 570 |
| SatI | GCNGC | 7 cut(s) | 498, 801, 1095, 1118, 1121, 1124, 1127 |
| Sau3AI | GATC | 2 cut(s) | 595, 861 |
| Sau96I | GGNCC | 4 cut(s) | 1144, 1235, 1271, 1277 |
| ScaI | AGTACT | 2 cut(s) | 278, 679 |
| SchI | GAGTC | 1 cut(s) | 625 |
| ScrFI | CCNGG | 3 cut(s) | 1152, 1239, 1275 |
| SfaNI | GCATC | 6 cut(s) | 352, 400, 469, 534, 752, 1237 |
| SinI | GGWCC | 4 cut(s) | 1144, 1235, 1271, 1277 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 82, 986, 1266 |
| SmlI | CTYRAG | 1 cut(s) | 246 |
| SmoI | CTYRAG | 1 cut(s) | 246 |
| Sse9I | AATT | 3 cut(s) | 102, 470, 608 |
| SsiI | CCGC | 3 cut(s) | 317, 495, 800 |
| SspMI | CTAG | 1 cut(s) | 531 |
| StyD4I | CCNGG | 3 cut(s) | 1150, 1237, 1273 |
| StyI | CCWWGG | 3 cut(s) | 77, 530, 774 |
| TaaI | ACNGT | 5 cut(s) | 27, 130, 265, 553, 604 |
| TaqI | TCGA | 4 cut(s) | 163, 351, 438, 513 |
| TasI | AATT | 3 cut(s) | 102, 470, 608 |
| TatI | WGTACW | 2 cut(s) | 276, 677 |
| TauI | GCSGC | 1 cut(s) | 803 |
| TfiI | GAWTC | 2 cut(s) | 196, 1060 |
| Tru1I | TTAA | 3 cut(s) | 101, 135, 570 |
| Tru9I | TTAA | 3 cut(s) | 101, 135, 570 |
| TscAI | CASTG | 3 cut(s) | 94, 468, 864 |
| TseFI | GTSAC | 2 cut(s) | 343, 1187 |
| TseI | GCWGC | 6 cut(s) | 497, 1094, 1117, 1120, 1123, 1126 |
| Tsp45I | GTSAC | 2 cut(s) | 343, 1187 |
| TspDTI | ATGAA | 2 cut(s) | 50, 166 |
| TspRI | CASTG | 3 cut(s) | 94, 468, 864 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 463, 1136 |
| VpaK11BI | GGWCC | 4 cut(s) | 1144, 1235, 1271, 1277 |
| XapI | RAATTY | 1 cut(s) | 608 |
| XceI | RCATGY | 1 cut(s) | 760 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1097, 1137 |
| XmaJI | CCTAGG | 1 cut(s) | 530 |
| XmiI | GTMKAC | 2 cut(s) | 267, 702 |
| XspI | CTAG | 1 cut(s) | 531 |
| ZrmI | AGTACT | 2 cut(s) | 278, 679 |
| Zsp2I | ATGCAT | 2 cut(s) | 1230, 1287 |