Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8519101.1

Orthogroup ID

OG0007635

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2890

Gene Structure 2890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8519101.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 874 bp

atggcttctgtgtccagtcagccacagttccgctacactcagccaccatccaaggtgctccatttgaggaacttgccgtgggagtgtacagaggaggaattgattgagctgggaaagccatttggtcaagttgtgaacacaaagtgcaacgtcggagcaaaccgcaatcaggcttttattgaatttgcagagttaaatcaagctattacgatgatatcgtattatgcctcatcgtcagaacctgctcaagtaagggggaaaactgtctacctacagtactccaataggcaagaaatagtgaacaacaaaactgctgcagatgttgccggaaatgtactcttggtaacaattgaaggtgcagatgcacggcttgtcagtatagatgttttacacctggtattttcagcttttggatttgtgcacaagataactacttttgagaagacagcaggattccaggcactgatccaattttcagatgcacaaattgccactgatgcaaaaaattcactggatggaagaaacatccctagctatctgctccctgatcatctgggaccttgtagtctcaggataacatattctggacacacagatttgagtgtgaaatttcagagtcaccgaagcagggactacactaatccttaccttcctgttgctccatcagccatagatggaaatggtcagataagtgtgggcttggatggtaaaaagcaagaacctgagagtaacgttcttcttgcatccatcgagaacatgcagtatgccgtcaccttggacgttctgcacatggtcttctctgcttttgggcctgtccaaaagatcgccatgtttgataagaacgggggagttcaggctttgattcagtatcccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0048024 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090351 GO:0097159 GO:1901363 GO:1903311 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

291

Amino Acids

32.0

Weight (kDa)

5.97

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53180 AT5G53180 AT5G53180 AT5G53180 AT5G53180 AT5G53180
fragaria_vesca	FvH4_7g31120
malus_domestica	MD01G1216000.v1.1 MD07G1285900.v1.1
prunus_persica	Prupe.2G308000_v2.0.a1
pyrus_communis	pycom01g22680 pycom07g25930
rosa_chinensis	RchiOBHm_Chr1g0380181
rosa_laevigata	RLG00000026322
rosa_multiflora	Rmu_co8519101.1_g000001 Rmu_sc0001232.1_g000021 Rmu_sc0016989.1_g000003
rosa_roxburghii	Rroxscaffold_4G00279590
rosa_rugosa	Rorug01G0418700
rosa_samantha	Rh1AG443600 Rh1BG398500 Rh1CG411900 Rh1DG429200
rosa_wichuraiana	Rw1G038520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	564
Acc36I	ACCTGC	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	2 cut(s)	31, 163
AclI	AACGTT	1 cut(s)	732
AclWI	GGATC	1 cut(s)	460
AcsI	RAATTY	3 cut(s)	182, 505, 608
AdeI	CACNNNGTG	1 cut(s)	144
AfaI	GTAC	3 cut(s)	88, 278, 336
AfiI	CCNNNNNNNGG	2 cut(s)	169, 628
AgsI	TTSAA	2 cut(s)	182, 353
AjnI	CCWGG	2 cut(s)	393, 456
AluBI	AGCT	4 cut(s)	109, 203, 407, 534
AluI	AGCT	4 cut(s)	109, 203, 407, 534
Alw21I	GWGCWC	2 cut(s)	60, 423
Alw26I	GTCTC	1 cut(s)	572
Alw44I	GTGCAC	1 cut(s)	419
AlwI	GGATC	1 cut(s)	460
AlwNI	CAGNNNCTG	2 cut(s)	242, 463
AoxI	GGCC	1 cut(s)	809
ApaLI	GTGCAC	1 cut(s)	419
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	3 cut(s)	182, 505, 608
AspS9I	GGNCC	2 cut(s)	557, 809
AsuHPI	GGTGA	2 cut(s)	611, 763
AvaII	GGWCC	1 cut(s)	557
BaeGI	GKGCMC	1 cut(s)	423
BbsI	GAAGAC	2 cut(s)	449, 787
Bbv12I	GWGCWC	2 cut(s)	60, 423
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	6 cut(s)	55, 509, 668, 670, 698, 755
BceAI	ACGGC	3 cut(s)	61, 383, 752
BciT130I	CCWGG	2 cut(s)	395, 458
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	1 cut(s)	531
BfmI	CTRYAG	2 cut(s)	272, 315
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	395, 458
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	557, 809
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	2 cut(s)	395, 458
BmsI	GCATC	4 cut(s)	352, 469, 487, 752
BpiI	GAAGAC	2 cut(s)	449, 787
BpuEI	CTTGAG	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	51, 77, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 628
Bse1I	ACTGG	2 cut(s)	15, 516
BseBI	CCWGG	2 cut(s)	395, 458
BseDI	CCNNGG	3 cut(s)	51, 77, 774
BseGI	GGATG	5 cut(s)	47, 520, 525, 709, 743
BseLI	CCNNNNNNNGG	2 cut(s)	169, 628
BseMII	CTCAG	3 cut(s)	53, 583, 714
BseNI	ACTGG	2 cut(s)	15, 516
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	301
BseYI	CCCAGC	1 cut(s)	109
BsgI	GTGCAG	2 cut(s)	378, 770
BshFI	GGCC	1 cut(s)	811
BsiHKAI	GWGCWC	2 cut(s)	60, 423
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	570, 644
BslI	CCNNNNNNNGG	2 cut(s)	169, 628
BsmAI	GTCTC	1 cut(s)	572
BsmFI	GGGAC	2 cut(s)	570, 644
BsnI	GGCC	1 cut(s)	811
Bsp1286I	GDGCHC	2 cut(s)	60, 423
Bsp1407I	TGTACA	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	465, 547, 822
BspACI	CCGC	2 cut(s)	31, 163
BspANI	GGCC	1 cut(s)	811
BspCNI	CTCAG	3 cut(s)	52, 582, 715
BspLI	GGNNCC	1 cut(s)	558
BspMAI	CTGCAG	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	15, 516
BssECI	CCNNGG	3 cut(s)	51, 77, 774
BssMI	GATC	3 cut(s)	465, 547, 822
BssT1I	CCWWGG	2 cut(s)	51, 774
Bst2UI	CCWGG	2 cut(s)	395, 458
Bst4CI	ACNGT	3 cut(s)	27, 265, 276
BstAPI	GCANNNNNTGC	2 cut(s)	323, 488
BstAUI	TGTACA	1 cut(s)	86
BstDEI	CTNAG	3 cut(s)	39, 569, 723
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	5 cut(s)	47, 520, 525, 709, 743
BstKTI	GATC	3 cut(s)	468, 550, 825
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	3 cut(s)	465, 547, 822
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 323, 488, 497, 665
BstNI	CCWGG	2 cut(s)	395, 458
BstNSI	RCATGY	1 cut(s)	760
BstSCI	CCNGG	2 cut(s)	393, 456
BstSFI	CTRYAG	2 cut(s)	272, 315
BstSLI	GKGCMC	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	301
BstV2I	GAAGAC	2 cut(s)	449, 787
BsuRI	GGCC	1 cut(s)	811
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	5 cut(s)	47, 520, 525, 709, 743
BtsIMutI	CAGTG	3 cut(s)	461, 492, 509
BveI	ACCTGC	1 cut(s)	250
CaiI	CAGNNNCTG	2 cut(s)	242, 463
Cfr13I	GGNCC	2 cut(s)	557, 809
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	3 cut(s)	87, 277, 335
CviAII	CATG	3 cut(s)	757, 790, 829
CviQI	GTAC	3 cut(s)	87, 277, 335
DdeI	CTNAG	3 cut(s)	39, 569, 723
DpnI	GATC	3 cut(s)	467, 549, 824
DpnII	GATC	3 cut(s)	465, 547, 822
DraIII	CACNNNGTG	1 cut(s)	144
DrdI	GACNNNNNNGTC	1 cut(s)	564
DseDI	GACNNNNNNGTC	1 cut(s)	564
Eco130I	CCWWGG	2 cut(s)	51, 774
Eco32I	GATATC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	557
EcoRII	CCWGG	2 cut(s)	393, 456
EcoRV	GATATC	1 cut(s)	216
EcoT14I	CCWWGG	2 cut(s)	51, 774
ErhI	CCWWGG	2 cut(s)	51, 774
FaeI	CATG	3 cut(s)	760, 793, 832
FaiI	YATR	8 cut(s)	225, 380, 580, 671, 758, 765, 791, 830
FaqI	GGGAC	2 cut(s)	570, 644
FatI	CATG	3 cut(s)	756, 789, 828
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	5 cut(s)	34, 512, 527, 716, 730
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	1 cut(s)	531
GluI	GCNGC	1 cut(s)	315
GsaI	CCCAGC	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	811
HapII	CCGG	1 cut(s)	327
Hin1II	CATG	3 cut(s)	760, 793, 832
HinfI	GANTC	3 cut(s)	453, 616, 862
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	2 cut(s)	611, 763
Hpy166II	GTNNAC	5 cut(s)	87, 136, 268, 301, 421
Hpy188I	TCNGA	5 cut(s)	155, 238, 478, 615, 687
Hpy188III	TCNNGA	3 cut(s)	571, 585, 751
Hpy8I	GTNNAC	5 cut(s)	87, 136, 268, 301, 421
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	347, 659
HpyCH4III	ACNGT	3 cut(s)	27, 265, 276
HpyCH4IV	ACGT	3 cut(s)	150, 732, 780
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 323, 488, 497, 665
HpyF3I	CTNAG	3 cut(s)	39, 569, 723
HpySE526I	ACGT	3 cut(s)	150, 732, 780
Hsp92II	CATG	3 cut(s)	760, 793, 832
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	3 cut(s)	465, 547, 822
LmnI	GCTCC	4 cut(s)	63, 155, 546, 664
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	4 cut(s)	352, 469, 487, 752
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	3 cut(s)	150, 732, 780
MaeIII	GTNAC	4 cut(s)	343, 617, 728, 769
MalI	GATC	3 cut(s)	467, 549, 824
MboI	GATC	3 cut(s)	465, 547, 822
MboII	GAAGA	4 cut(s)	454, 531, 728, 787
MfeI	CAATTG	1 cut(s)	348
MhlI	GDGCHC	2 cut(s)	60, 423
MluCI	AATT	7 cut(s)	98, 182, 348, 470, 486, 505, 608
MlyI	GAGTC	1 cut(s)	625
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	4 cut(s)	60, 85, 88, 238
MseI	TTAA	1 cut(s)	194
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	2 cut(s)	395, 458
MunI	CAATTG	1 cut(s)	348
MvaI	CCWGG	2 cut(s)	395, 458
MwoI	GCNNNNNNNGC	5 cut(s)	115, 323, 488, 497, 665
NdeII	GATC	3 cut(s)	465, 547, 822
NlaIII	CATG	3 cut(s)	760, 793, 832
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	2 cut(s)	617, 769
NspI	RCATGY	1 cut(s)	760
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	453, 862
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	624
PpuMI	RGGWCCY	1 cut(s)	557
Psp1406I	AACGTT	1 cut(s)	732
Psp5II	RGGWCCY	1 cut(s)	557
Psp6I	CCWGG	2 cut(s)	393, 456
PspFI	CCCAGC	1 cut(s)	109
PspGI	CCWGG	2 cut(s)	393, 456
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	2 cut(s)	557, 809
PspPPI	RGGWCCY	1 cut(s)	557
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	2 cut(s)	242, 463
RsaI	GTAC	3 cut(s)	88, 278, 336
RsaNI	GTAC	3 cut(s)	87, 277, 335
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	3 cut(s)	465, 547, 822
Sau96I	GGNCC	2 cut(s)	557, 809
ScaI	AGTACT	1 cut(s)	278
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	2 cut(s)	395, 458
SduI	GDGCHC	2 cut(s)	60, 423
SexAI	ACCWGGT	1 cut(s)	393
SfaNI	GCATC	4 cut(s)	352, 469, 487, 752
SfcI	CTRYAG	2 cut(s)	272, 315
SinI	GGWCC	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	7 cut(s)	98, 182, 348, 470, 486, 505, 608
SsiI	CCGC	2 cut(s)	31, 163
SspMI	CTAG	1 cut(s)	531
StyD4I	CCNGG	2 cut(s)	393, 456
StyI	CCWWGG	2 cut(s)	51, 774
TaaI	ACNGT	3 cut(s)	27, 265, 276
TaiI	ACGT	3 cut(s)	153, 735, 783
TaqI	TCGA	1 cut(s)	750
TasI	AATT	7 cut(s)	98, 182, 348, 470, 486, 505, 608
TatI	WGTACW	3 cut(s)	86, 276, 334
TfiI	GAWTC	2 cut(s)	453, 862
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	3 cut(s)	468, 499, 516
TseFI	GTSAC	2 cut(s)	617, 769
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	2 cut(s)	617, 769
TspRI	CASTG	3 cut(s)	468, 499, 516
VneI	GTGCAC	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	3 cut(s)	182, 505, 608
XceI	RCATGY	1 cut(s)	760
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	531
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.