FvH4_7g31120

Polypyrimidine tract-binding protein homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
22520185 .. 22526427
6243 bp
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UTR
Exon/CDS
Intron
FvH4_7g31120.t1

Sequence Viewer

Length: 1332 bp
ATGGCTTCAGTGTCCAGTCAGCCACAGTTCCGATACACTCAGCCACCATCCAAGGTACTCCATTTGAGGAACTTGCCGTGGGAGTGTACAGAGGAGGAACTGATTGAACTGGGGAAGCCATTTGGTCAAGTTGTGAACACAAAGTGCAATGTTGGAGCAAACCGGAATCAAGCTTTTATTGAATTTGCAGAGTTGAATCAAGCTATTACAATGATATCATATTATGCCTCATCATCAGAACCGGCTCAAGTTAGGGGGAAAACTGTCTACCTACAGTACTCCAATAGGCAAGAAATAGTGAACAACAAAACTGCTGCAGATGTTGCTGGAAATGTACTCTTGGTAACAATTGAAGGTGAAGATGCACGGCTTGTCAGTATAGATGTTTTACACCTGGTATTTTCAGCTTTTGGGTTTGTGCATAAGATAACAACTTTTGAGAAGACAGCGGGATTTCAGGCACTGGTCCAATTTTCAGATGCACAAATTGCCACGGATGCAAAAAATTCACTGGATGGAAGAAACATCCCTAGCTATCTGCTCCCTGATAATCTGGGACCTTGTAGTCTCAGGATAACATATTCTGGACACACAGATTTGAGTGTGAAATTTCAGAGTCATCGAAGCAGGGACTACACTAATCCCTACCTTCCTGTTGCTCCATCAGCCATTGATGGAAATGGTCAGATAAGTGTGGGTTTGGATGGTAAGAAGCAAGAACCTGAGAGTAACGTGCTTCTTGCATCCATCGAGAACATGCAGTATGCTGTTACCTTGGACGTTCTGCACATGGTCTTCTCTGCTTTTGGGCCTGTCCAAAAGATCGCCATGTTTGATAAGAACGGGGGAGTTCAGGCTTTGATTCAGTATCCTGATGTTCAGACAGCTGTTGTTGCAAAGGAAGCCTTGGAGGGGCATTGCATTTATGATGGAGGGTTTTGCAAGCTTCACGTCTCGTATTCACGTCATACTGATCTCAGCATAAAGGTAAACAATGATAGGAGCAGAGACTATACACTTCCTACCGTTCCAATGGTGAACTCACAACCCTCGATTCTAGGACAACAGCCAGTTCACATGATGAACCCAGCTGCTCCTCAATACAGTGGTGGTGCACAATTTGCTCCTACAGGTCAGGCTATGATGCCTCAACCTTCAGCAGGGTGGGTACCTACAGTTCCAGCAGTTCCTTCTCAGCCCATGCCGATGCAGATGCCTAATCAACCTTACATGCCATCTGGAACAGTACCCTCCCAAATGGGTCCTGGCATGATGCCGGGTGGCGCGCAGCACCCGAATTTGCCCCCATATCACAATGGTCATGTGCAATAG

Protein Analysis

444

Amino Acids

48.29

Weight (kDa)

6.1

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 22 - 71 7e-07 RNA recognition motif
RRM_8 PF11835 243 - 321 6.2e-08 RRM-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 564
Acc65I GGTACC 1 cut(s) 1168
AccB1I GGYRCC 1 cut(s) 1168
AccI GTMKAC 1 cut(s) 267
AccII CGCG 1 cut(s) 1286
AciI CCGC 1 cut(s) 449
AcsI RAATTY 4 cut(s) 182, 505, 608, 1297
AcuI CTGAAG 1 cut(s) 1140
AdeI CACNNNGTG 1 cut(s) 144
AfaI GTAC 6 cut(s) 57, 88, 278, 336, 1170, 1248
AfiI CCNNNNNNNGG 2 cut(s) 912, 1160
AgsI TTSAA 4 cut(s) 107, 182, 196, 353
AjiI CACGTC 2 cut(s) 952, 965
AjnI CCWGG 2 cut(s) 393, 1264
AluBI AGCT 7 cut(s) 173, 203, 407, 534, 887, 946, 1091
AluI AGCT 7 cut(s) 173, 203, 407, 534, 887, 946, 1091
Alw21I GWGCWC 1 cut(s) 1117
Alw26I GTCTC 3 cut(s) 572, 958, 1002
Alw44I GTGCAC 1 cut(s) 1113
AlwNI CAGNNNCTG 1 cut(s) 463
AoxI GGCC 1 cut(s) 809
ApaLI GTGCAC 1 cut(s) 1113
ApeKI GCWGC 3 cut(s) 314, 1091, 1288
ApoI RAATTY 4 cut(s) 182, 505, 608, 1297
Asp718I GGTACC 1 cut(s) 1168
AspLEI GCGC 2 cut(s) 1286, 1288
AspS9I GGNCC 4 cut(s) 466, 557, 809, 1262
AsuC2I CCSGG 1 cut(s) 1278
AsuHPI GGTGA 2 cut(s) 368, 1048
AvaII GGWCC 3 cut(s) 466, 557, 1262
BaeGI GKGCMC 1 cut(s) 1117
BanI GGYRCC 1 cut(s) 1168
BbsI GAAGAC 2 cut(s) 449, 787
Bbv12I GWGCWC 1 cut(s) 1117
BbvI GCAGC 3 cut(s) 301, 1078, 1300
BccI CCATC 8 cut(s) 55, 509, 668, 670, 698, 755, 923, 1243
BceAI ACGGC 2 cut(s) 61, 383
BcgI CGANNNNNNTGC 2 cut(s) 1195, 1229
BciT130I CCWGG 2 cut(s) 395, 1266
BciVI GTATCC 1 cut(s) 879
BcnI CCSGG 1 cut(s) 1278
BcoDI GTCTC 3 cut(s) 572, 958, 1002
BfaI CTAG 2 cut(s) 531, 1058
BfmI CTRYAG 4 cut(s) 272, 315, 1128, 1173
BfuI GTATCC 1 cut(s) 879
BisI GCNGC 3 cut(s) 315, 1092, 1289
BlsI GCNGC 3 cut(s) 316, 1093, 1290
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 3 cut(s) 395, 1266, 1278
Bme18I GGWCC 3 cut(s) 466, 557, 1262
BmgBI CACGTC 2 cut(s) 952, 965
BmgT120I GGNCC 4 cut(s) 466, 557, 809, 1262
BmiI GGNNCC 3 cut(s) 558, 1170, 1263
BmrFI CCNGG 3 cut(s) 395, 1266, 1278
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 8 cut(s) 352, 469, 487, 752, 1134, 1197, 1203, 1263
BmuI ACTGGG 1 cut(s) 119
BpiI GAAGAC 2 cut(s) 449, 787
BpuEI CTTGAG 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 1278
BsaJI CCNNGG 5 cut(s) 51, 77, 492, 774, 906
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 2 cut(s) 912, 1160
Bse118I RCCGGY 1 cut(s) 241
Bse1I ACTGG 5 cut(s) 15, 114, 468, 516, 1070
Bse3DI GCAATG 2 cut(s) 154, 916
BseBI CCWGG 2 cut(s) 395, 1266
BseDI CCNNGG 5 cut(s) 51, 77, 492, 774, 906
BseGI GGATG 6 cut(s) 47, 502, 520, 525, 709, 743
BseLI CCNNNNNNNGG 2 cut(s) 912, 1160
BseMI GCAATG 2 cut(s) 154, 916
BseMII CTCAG 5 cut(s) 53, 583, 714, 991, 1208
BseNI ACTGG 5 cut(s) 15, 114, 468, 516, 1070
BsePI GCGCGC 1 cut(s) 1284
BseRI GAGGAG 2 cut(s) 107, 1086
BseSI GKGCMC 1 cut(s) 1117
BseXI GCAGC 3 cut(s) 301, 1078, 1300
BseYI CCCAGC 1 cut(s) 1087
BsgI GTGCAG 1 cut(s) 770
Bsh1236I CGCG 1 cut(s) 1286
BshFI GGCC 1 cut(s) 811
BshNI GGYRCC 1 cut(s) 1168
BsiHKAI GWGCWC 1 cut(s) 1117
BsiSI CCGG 3 cut(s) 163, 242, 1277
BslFI GGGAC 2 cut(s) 570, 644
BslI CCNNNNNNNGG 2 cut(s) 912, 1160
BsmAI GTCTC 3 cut(s) 572, 958, 1002
BsmBI CGTCTC 1 cut(s) 958
BsmFI GGGAC 2 cut(s) 570, 644
BsnI GGCC 1 cut(s) 811
Bsp1286I GDGCHC 1 cut(s) 1117
Bsp1407I TGTACA 1 cut(s) 86
Bsp143I GATC 2 cut(s) 822, 973
BspACI CCGC 1 cut(s) 449
BspANI GGCC 1 cut(s) 811
BspCNI CTCAG 5 cut(s) 52, 582, 715, 990, 1207
BspFNI CGCG 1 cut(s) 1286
BspLI GGNNCC 3 cut(s) 558, 1170, 1263
BspMAI CTGCAG 1 cut(s) 319
BspT107I GGYRCC 1 cut(s) 1168
BsrDI GCAATG 2 cut(s) 154, 916
BsrFI RCCGGY 1 cut(s) 241
BsrGI TGTACA 1 cut(s) 86
BsrI ACTGG 5 cut(s) 15, 114, 468, 516, 1070
BssAI RCCGGY 1 cut(s) 241
BssECI CCNNGG 5 cut(s) 51, 77, 492, 774, 906
BssHII GCGCGC 1 cut(s) 1284
BssMI GATC 2 cut(s) 822, 973
BssT1I CCWWGG 3 cut(s) 51, 774, 906
Bst2UI CCWGG 2 cut(s) 395, 1266
Bst4CI ACNGT 7 cut(s) 27, 265, 276, 1027, 1106, 1177, 1246
BstAPI GCANNNNNTGC 3 cut(s) 323, 488, 1121
BstAUI TGTACA 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 944, 1286
BstDEI CTNAG 5 cut(s) 39, 569, 723, 977, 1194
BstDSI CCRYGG 2 cut(s) 77, 492
BstENI CCTNNNNNAGG 1 cut(s) 1158
BstF5I GGATG 6 cut(s) 47, 502, 520, 525, 709, 743
BstFNI CGCG 1 cut(s) 1286
BstHHI GCGC 2 cut(s) 1286, 1288
BstKTI GATC 2 cut(s) 825, 976
BstMAI GTCTC 3 cut(s) 572, 958, 1002
BstMBI GATC 2 cut(s) 822, 973
BstMWI GCNNNNNNNGC 7 cut(s) 323, 488, 497, 665, 893, 902, 1121
BstNI CCWGG 2 cut(s) 395, 1266
BstNSI RCATGY 2 cut(s) 760, 1234
BstSCI CCNGG 3 cut(s) 393, 1264, 1276
BstSFI CTRYAG 4 cut(s) 272, 315, 1128, 1173
BstSLI GKGCMC 1 cut(s) 1117
BstUI CGCG 1 cut(s) 1286
BstV1I GCAGC 3 cut(s) 301, 1078, 1300
BstV2I GAAGAC 2 cut(s) 449, 787
BsuI GTATCC 1 cut(s) 879
BsuRI GGCC 1 cut(s) 811
BtgI CCRYGG 2 cut(s) 77, 492
BtrI CACGTC 2 cut(s) 952, 965
BtsCI GGATG 6 cut(s) 47, 502, 520, 525, 709, 743
BtsIMutI CAGTG 4 cut(s) 15, 461, 509, 1111
Cac8I GCNNGC 2 cut(s) 944, 1286
CaiI CAGNNNCTG 1 cut(s) 463
CfoI GCGC 2 cut(s) 1286, 1288
Cfr10I RCCGGY 1 cut(s) 241
Cfr13I GGNCC 4 cut(s) 466, 557, 809, 1262
CsiI ACCWGGT 1 cut(s) 393
Csp6I GTAC 6 cut(s) 56, 87, 277, 335, 1169, 1247
CviAII CATG 8 cut(s) 757, 790, 829, 1078, 1201, 1231, 1270, 1322
CviQI GTAC 6 cut(s) 56, 87, 277, 335, 1169, 1247
DdeI CTNAG 5 cut(s) 39, 569, 723, 977, 1194
DpnI GATC 2 cut(s) 824, 975
DpnII GATC 2 cut(s) 822, 973
DraIII CACNNNGTG 1 cut(s) 144
DrdI GACNNNNNNGTC 1 cut(s) 564
DseDI GACNNNNNNGTC 1 cut(s) 564
Eco130I CCWWGG 3 cut(s) 51, 774, 906
Eco32I GATATC 1 cut(s) 216
Eco47I GGWCC 3 cut(s) 466, 557, 1262
Eco57I CTGAAG 1 cut(s) 1140
EcoNI CCTNNNNNAGG 1 cut(s) 1158
EcoO109I RGGNCCY 2 cut(s) 557, 1262
EcoRII CCWGG 2 cut(s) 393, 1264
EcoRV GATATC 1 cut(s) 216
EcoT14I CCWWGG 3 cut(s) 51, 774, 906
ErhI CCWWGG 3 cut(s) 51, 774, 906
Esp3I CGTCTC 1 cut(s) 958
FaeI CATG 8 cut(s) 760, 793, 832, 1081, 1204, 1234, 1273, 1325
FalI AAGNNNNNCTT 2 cut(s) 890, 922
FaqI GGGAC 2 cut(s) 570, 644
FatI CATG 8 cut(s) 756, 789, 828, 1077, 1200, 1230, 1269, 1321
FauI CCCGC 1 cut(s) 442
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 315, 1092, 1289
FokI GGATG 6 cut(s) 34, 509, 512, 527, 716, 730
Fsp4HI GCNGC 3 cut(s) 315, 1092, 1289
FspBI CTAG 2 cut(s) 531, 1058
GlaI GCGC 2 cut(s) 1285, 1287
GluI GCNGC 3 cut(s) 315, 1092, 1289
GsaI CCCAGC 1 cut(s) 1091
HaeIII GGCC 1 cut(s) 811
HapII CCGG 3 cut(s) 163, 242, 1277
HhaI GCGC 2 cut(s) 1286, 1288
Hin1II CATG 8 cut(s) 760, 793, 832, 1081, 1204, 1234, 1273, 1325
Hin6I GCGC 2 cut(s) 1284, 1286
HinP1I GCGC 2 cut(s) 1284, 1286
HindIII AAGCTT 2 cut(s) 171, 944
HinfI GANTC 5 cut(s) 166, 196, 616, 862, 1054
HpaII CCGG 3 cut(s) 163, 242, 1277
HphI GGTGA 2 cut(s) 368, 1048
Hpy166II GTNNAC 8 cut(s) 87, 136, 268, 301, 991, 1039, 1075, 1115
Hpy188I TCNGA 6 cut(s) 32, 238, 478, 615, 687, 882
Hpy188III TCNNGA 5 cut(s) 571, 585, 751, 872, 1239
Hpy8I GTNNAC 8 cut(s) 87, 136, 268, 301, 991, 1039, 1075, 1115
HpyAV CCTTC 4 cut(s) 347, 659, 1164, 1200
HpyCH4III ACNGT 7 cut(s) 27, 265, 276, 1027, 1106, 1177, 1246
HpyCH4IV ACGT 4 cut(s) 732, 780, 951, 964
HpyF10VI GCNNNNNNNGC 7 cut(s) 323, 488, 497, 665, 893, 902, 1121
HpyF3I CTNAG 5 cut(s) 39, 569, 723, 977, 1194
HpySE526I ACGT 4 cut(s) 732, 780, 951, 964
Hsp92II CATG 8 cut(s) 760, 793, 832, 1081, 1204, 1234, 1273, 1325
HspAI GCGC 2 cut(s) 1284, 1286
KpnI GGTACC 1 cut(s) 1172
Kzo9I GATC 2 cut(s) 822, 973
LmnI GCTCC 6 cut(s) 155, 546, 664, 1002, 1099, 1129
Lsp1109I GCAGC 3 cut(s) 301, 1078, 1300
LweI GCATC 8 cut(s) 352, 469, 487, 752, 1134, 1197, 1203, 1263
MabI ACCWGGT 1 cut(s) 393
MaeI CTAG 2 cut(s) 531, 1058
MaeII ACGT 4 cut(s) 732, 780, 951, 964
MaeIII GTNAC 3 cut(s) 343, 728, 769
MalI GATC 2 cut(s) 824, 975
MboI GATC 2 cut(s) 822, 973
MboII GAAGA 4 cut(s) 371, 454, 531, 787
MfeI CAATTG 1 cut(s) 348
MhlI GDGCHC 1 cut(s) 1117
MluCI AATT 8 cut(s) 182, 348, 470, 486, 505, 608, 1118, 1297
MlyI GAGTC 1 cut(s) 625
MmeI TCCRAC 1 cut(s) 133
MslI CAYNNNNRTG 1 cut(s) 1205
MspA1I CMGCKG 3 cut(s) 449, 887, 1091
MspI CCGG 3 cut(s) 163, 242, 1277
MspR9I CCNGG 3 cut(s) 395, 1266, 1278
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 2 cut(s) 395, 1266
MvnI CGCG 1 cut(s) 1286
MwoI GCNNNNNNNGC 7 cut(s) 323, 488, 497, 665, 893, 902, 1121
NciI CCSGG 1 cut(s) 1278
NdeII GATC 2 cut(s) 822, 973
NlaIII CATG 8 cut(s) 760, 793, 832, 1081, 1204, 1234, 1273, 1325
NlaIV GGNNCC 3 cut(s) 558, 1170, 1263
NspI RCATGY 2 cut(s) 760, 1234
PauI GCGCGC 1 cut(s) 1284
PfeI GAWTC 4 cut(s) 166, 196, 862, 1054
PkrI GCNGC 3 cut(s) 316, 1093, 1290
PleI GAGTC 1 cut(s) 624
PpsI GAGTC 1 cut(s) 624
PpuMI RGGWCCY 2 cut(s) 557, 1262
Psp5II RGGWCCY 2 cut(s) 557, 1262
Psp6I CCWGG 2 cut(s) 393, 1264
PspFI CCCAGC 1 cut(s) 1087
PspGI CCWGG 2 cut(s) 393, 1264
PspN4I GGNNCC 3 cut(s) 558, 1170, 1263
PspPI GGNCC 4 cut(s) 466, 557, 809, 1262
PspPPI RGGWCCY 2 cut(s) 557, 1262
PsrI GAACNNNNNNTAC 2 cut(s) 1161, 1193
PstI CTGCAG 1 cut(s) 319
PstNI CAGNNNCTG 1 cut(s) 463
PteI GCGCGC 1 cut(s) 1284
PvuII CAGCTG 2 cut(s) 887, 1091
RsaI GTAC 6 cut(s) 57, 88, 278, 336, 1170, 1248
RsaNI GTAC 6 cut(s) 56, 87, 277, 335, 1169, 1247
RseI CAYNNNNRTG 1 cut(s) 1205
SatI GCNGC 3 cut(s) 315, 1092, 1289
Sau3AI GATC 2 cut(s) 822, 973
Sau96I GGNCC 4 cut(s) 466, 557, 809, 1262
ScaI AGTACT 1 cut(s) 278
SchI GAGTC 1 cut(s) 625
ScrFI CCNGG 3 cut(s) 395, 1266, 1278
SduI GDGCHC 1 cut(s) 1117
SexAI ACCWGGT 1 cut(s) 393
SfaNI GCATC 8 cut(s) 352, 469, 487, 752, 1134, 1197, 1203, 1263
SfcI CTRYAG 4 cut(s) 272, 315, 1128, 1173
SinI GGWCC 3 cut(s) 466, 557, 1262
SmiMI CAYNNNNRTG 1 cut(s) 1205
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 8 cut(s) 182, 348, 470, 486, 505, 608, 1118, 1297
SsiI CCGC 1 cut(s) 449
SspMI CTAG 2 cut(s) 531, 1058
StyD4I CCNGG 3 cut(s) 393, 1264, 1276
StyI CCWWGG 3 cut(s) 51, 774, 906
TaaI ACNGT 7 cut(s) 27, 265, 276, 1027, 1106, 1177, 1246
TaiI ACGT 4 cut(s) 735, 783, 954, 967
TaqI TCGA 3 cut(s) 622, 750, 1052
TasI AATT 8 cut(s) 182, 348, 470, 486, 505, 608, 1118, 1297
TatI WGTACW 3 cut(s) 86, 276, 334
TfiI GAWTC 4 cut(s) 166, 196, 862, 1054
TscAI CASTG 4 cut(s) 15, 468, 516, 1111
TseI GCWGC 3 cut(s) 314, 1091, 1288
TspDTI ATGAA 1 cut(s) 1097
TspGWI ACGGA 1 cut(s) 509
TspRI CASTG 4 cut(s) 15, 468, 516, 1111
VneI GTGCAC 1 cut(s) 1113
VpaK11BI GGWCC 3 cut(s) 466, 557, 1262
XagI CCTNNNNNAGG 1 cut(s) 1158
XapI RAATTY 4 cut(s) 182, 505, 608, 1297
XceI RCATGY 2 cut(s) 760, 1234
XcmI CCANNNNNNNNNTGG 1 cut(s) 1262
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 2 cut(s) 531, 1058
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.