Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007635

Physical Location & Seq

Genomic Coordinates Forward (+)

52071012 .. 52085353

Gene Structure 14342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0418700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6351 bp

ATGGCGACCTCGATTGCGTCCCAGTTAAAAGTCCTGAAATCGCTGATACAAGTCGACCAAGACCCGTCGCAGAAGCGGCCCTTCACTCGCCCTTCCATCCTCTTCGATCCCAAAGAGGCCGCCGATATCGATATCGACACAATTTTCGCCGTAGGACTTCAAGGTCTTGAGCTTCTTGTTAGTACCGACGAGCGGTTCCGAAACTTTAAGAGTGACTTGTTCAGCTACCAGAGTAAGGAATTGGATAGAGAGTTGATGGGAGTAGAGGAAAACAAACGCATTGATGCTTCGATTAGTAAGTACTTGAGATTGCTGTCAGGGCATTTCGAGCTCCCATCGTCACTCAAGACTCTCGAGTACTTGGTGCGGAGATATAAGATTCATGTGTACAACTTCGAGGAATTGATTTTGTGTGCTCTGCCGTACCATGAGACCCACGCATTTGTTAAAATTGTTCAATTAATTAACTTCAGAAATAGTAAGTGGAAATTTTTAGAGGGCGTGAAAGTTTCTGGTGCAGCGCCACCTAGAAATGTTATAGTGCAGCAATGTATTCGTGACATGGGGGTTTTGGAGGCTTTATTCGACTATGCATCCCCGTCAAAGAAGTATCGGCCTTCAAAGCCCGTGATCAGATTTTGCACGGCAGTTGTTGTTGAGGTTTTGGGTTCTGTTGCATCTGTTGAAAGTCATGTTGTGAAAAGAATCTGTTCACTTATTCATTCTGTACTTGAGGTTGGCACGGATGGACATTCAGAAAACAAGGCTGGTGCTATGATGATTGTTGGTATGCTAGCAAGTAAAGTTACAATATCTCCCGGACTTGTCAAGGGATTGATTTTATTAATTGCTAAAGTTGCTGAAGAGGATGCAAAAGAGTCAGCTGATCTTCAGCTTTTTCGCTTATCACTTATGACTTTGATCAACCTTGTTCAGTTGCAAGTTGTGGATAAGTTTCCCATGAAGGCTCTGAAGAGTTTGATCGGCATTCGGGATTTTGCTGGCATCCTTCTGGGACTTTTCAACAAGTTCAAAATTGATAGATTCCTTTCTGTGCTTTTGGATTCTCTTGTTGACTATAGTTCGTCTGATGAATCTTGCCAGCTTGCGTTGATCTCCATATTAGATACAGTTCCTTCCAAGAATTTTGTTCATCATGTAGTTCCAAAGGTCCTATCTTCCTGCTTGCAAAAGTCACAGGACATGGAAAATTCAACATTATTTTCATCAGGAAGCTGGGCAGAGAAAGTTTTACTCGTTCTTAGAAGATATCCATCTGAACTGCATGGAGCTGCTCACAAATTTCTGGAAAAGAATGTGCAATCTAAGAAACGGGGTTCGGTACATGAAGCTCTGCGTAAAATGTTGGATGGGAATTTGGACAGGTCACTAGCTTGCTCAGAATCAAATTTTTGGTTCAGGTTGCATCATCCGGAGGCTGATGTTCGTCGCCGTACACTTTCTGAAATAAGGACATCAGGTCTTCTGGAAGCCAAGGGTACAAATTCGCAGAGTCTTGTAATCATCCAAGATGGCATATTGCGACAGCTTCAGGATGATGATCTTAGTGTTGTCAGAGCGGCTTTGTCGTTAGACAGATTGTCCAGTTTAATAAACCCATCTGATCTTATTGAAGTACTGGATAATCTGCTTAGAAGATGCATTGGTCTTTTAACAAGTTCATTGGAGAACAACAGCCTAGCATGTGATGTTGCTATTTTGTGCCTAAAGAATGCTGTTGCTGACATCCATGAGAATGTTGAACGTTGCAATAAACTAGCTGCTATGATATTTCCTTTGCTCCTTGTTGTACCTAAGACACAGAGGTTAAATTTGAAAGCATTGGAATTAGCTAAGGCAGTAAAATGGCCACTGTTTGAGAATCTTGCTGCTGCATGCAATACAGAACAAACATTACAACCAGGAAAGTTATCCTCCATTAACATGGCCACCATTACTAGTTTGGCGAGCAGATTCTTGTTGCACCCTGCAGAATTTATGCCTTGGCTTGTTCAGAGTTCTAATGACTTTGAGTTGTCAAAGACGCACTTCTTTTTGGTGATGATGCAGACAATTCTGACTGACAAGGAATCTGCTGAATGTATGGAACTTTTTGAAGTTTTGTTTCCTGCATTGAAGACAGAATGGGAAGCATTTGAGTCTACGGGTGATATCTCTATAGCAGAGTTCAAAACAGAGATGCTGAATTGGGATTGCAGCAGATTTCTTGATAAGCTAGATTCCAATTTGAAAGCAATAAATGCAAATATTCTAATTTGCATCTTTTGGAGGTTGATGGAGGCATTTCTATCTGCGATGCCTGCAGATGTCTCATTGGATGGTGGTGGGAAGTGGGTTAGCTGGCTCAGGGAATTGTTCGTCTTCTTCTCAGGCTGTCAGTTTAAGAACTTATTTAAGGAGCACCGTCATTACGTTGTCACAAAGTGCAAGATATCTGCTGTTTCTTTCCTTGCCAAGTTTTTCACAGAAGAAGACGTTCCTGTTGCAGTCCAGGTCGAGAGTCTTCACTGTTTTTCCTATCTGTGTCTTCAATCAGAAGTTAGATTGCCAATTCAATTTCTTGCTGAATTTCCATCTCTTCTTGTTCCACTGGCTAGTTGTAACCAGGAGATAAGAAATGTTGCCATGAATTGTATTGAGGGTTTACAGACCTTTTCATCTCATGTTGACTCTTTGAGCAAGAAAAATGGAAACCGTGCAATTCGGATTAATCATCTTGATAAGCTGCTGGACTTGGTGGTCCAGCAGAAAAGGCTAATCCTATCGGACAGGAACTTGCTTCCTTCTCTCTTGGCCTCTTTGCTCAGCCCGTCCTTCCAGAGCTTCTTAGGACCAAAGAATATTGAGATAAGGTTTGATCAATCTACAAGAGAAGAGATTCTTACTTTCATGTTGAATTCTGCCATGAAACTGCCTGATTATGCAAGGCTTGCTATTCTTTCTTTGCTCAGAGGAACAGGCAATGCCATTATGCATCATAAAGAAGTAAAGTCATATTTATCTCATCTCTTGGAAAGACGCAGTGAGAGTTTGTCAAAAATTGAAGTTCAGATATTATGCCTTCTACTGGAGTGCTGTGCAGTGCCTTCTTCATCAGACGGGCATGTATTTGAGGACCATTTATTGGAGGCTTTGCAATTGGATGGCTTGGCTCCAGAAGACGCTTCCACCATACAGCCTTGTATTACTGTCCTGCAGAAGCTTAACAGCCAAATTTACAGTGGACTGAAGACAGAAGTGCAGGAGCTTTTGTTCCGAAAACTGGTAGCTGTGTTTCAGAATTCAAATGGGGACATACAAAATGCAACTAGAGCAGCCTTGCAGCGTTTACATATTACTTGCTCCACTATCGTCCACACTCTCGATCACATACTCAAAGATGGAAGTTGTGCAAGTCGTTCAGTGCACGGAACAAAGAAAATGAAACGTCAGAAGTCCACTTCGTCTAGTGATGTGATACGTGACAGAGAAAATGCACTCTCTTTACTTGGTTCCCTCCTTGGTATTTTATTATTTAAGAAAGACATAGAGAAGAGGGACTCTCTATTGGGGCCGTTGTTTAAGCTTCTTTACAAAACCTTTTCCAATGAGTGGGTACAGGACCACTTTAGCATTTCTGATGCCAGGTTGAGCACAGTAAATTACATACAACAGACACTGCTGATAATCTTAGAAGATATCAGTTCTTCACTAATAAGTTCTATTCCACTGGAGGACAACATAGTAAATGAGATTAATGTCAAACATTTGGTTGAGTGTGCCCATTCTGCGAAGGATGGAGTTACTCGCAACCATGTCTTTTCACTGATTTCCTCCATCACAAAGATCGTTCCAGAAAAAGTTTTGGAGCATATGCTGGATATTTTTGCTGTTATTGGAGAGTCAGCAGTCACACAGATTGATAGCCATTCACAGCGTGTGTTTGAGGATCTTTTATCTACAGTTGTTCCTTGTTGGCTGTCTGGGGCAGGCAGCAATGACAAATTGCTGCAGATTTTTGTTAATGTACTGCCTGAAGTTGCTGAATATAGAAGGCTATCAATTGTTGTGTACCTACTGAGGACTTTGGGAGAGTCAAATAGCTTGGCTTCATTACTTGTTCTTCTTTTCCGTTCACTAATTTCAAGAAAAGGGTCATCTTGGTTTGATAATGTGCATGCTTCAGATAGCTCCACAACCTCTTTACAGAGAGAGTGGGAGTATGCCCTAGCGCTTCAAATATGTGAGCAATATTCATGTATGATATGGCTTCCCCCTCTTGTTATGCTGCTTAAACAAATGGAAACTGGTCAAGAGGTATTTAGAGAATTGTTAATTGCAATGCGGTTCACCTTGCATAAGCTGCAAGATCCCGAGTTTGCGCTCAAGATGGCATCTGGGGAAGAGTCGGACAAAATTCAGGCTACATTGGGAGAACTCATGGAGCAGGTTGTCTCTCTCCAGCAACTGGTAGATGCAAGAAGGAAGGACAAAAATATTAATGTCATTAGGAAAGATTTGAAGGAGTGTATGCATGCTGTAATGAGGGCTATTACTGGGGTCATGAACCCTTCGACACTCTTTAATGGCATAACTAAGTTGCTTGGCCACAGAGATCAAAATGTGGAAAAGAAGGCACTTGGACTCCTATGTGAAACCATTAGGAATCTTGACACGGTCAAAGCAAAGCTTAAGTTTAATAAAAGTTGGCTTCTTTGGCATCATCTTGATGAGATCTCTCTTGGATCGTTGCGAGTTATGTGTATGAAAATTGTTCAGTTAATTGATGATTCTTCTGATGATTTGGAAGTCTCCTTGAAAGTGGCAGCAGCTTTGGCTCTAGAAGTTTTAGCCCACCGGTTCCCTTCTAACTCTTCCATCTTCAGTGAGTGTCTACCATCTGTTACAAAAAGTATTGGTACGCACGATTTGCCAGTGTCATCTAGCTGCCTTCAAACAACTGGTGCTTTGATCAATGTGCTTGGACCCAAGGCACTCTCTGAGCTTCCTCACATAATGGATAGTTTGATTAAGATTTCTCGTGAAGTCCTTGTATCCTCGGATACAAAAGCCATATCCAGTGGTGATAGCCGGCCTGTTGTATTACAAAAACCCCAGGAATCTCTAATTCTGTCTATTCTTGTTACTTTGGAGGCTGTTGTGGTTAAGCTAGGGCAGTTCTTAAGCCCGTATCTTGAAGATATTACAAGAGTTATGGTGCTCGATCTTGATTATGCGTTAGGATCTGATCAGAAGCTGAAAATGCGAGCTGATTCAGTACGAAAGCTCATCACCGAGAACATCACAGTTCGACTTGCTCTACCGCCCTTGCTAAACATATACTCTAGCACAGTTGAGTCTGGGGATTCCAGTTTATTAATTTATTTTGGAATGCTGGCCAACATGATTGGAAGAATGGATAGAACATCTGTTAGTGGTTACCATGCTAAGATTTTTGAACGGTGCTTGATTGCTCTTGATCTACGCCGTCAACATCCGGCTTCTGTTCAAAGAATTGATGATGTAGAGAAAAGTGTATTCGCTGCAATGATTTCTCTCACTATGAAGCTTACAGAGACAATGTTTAGACCTCTTTTCATTAAGAGTATTGATTGGGCAAACTCAGATGTGGAAGATATTTCTTCTGCAGGATATATACCGAGGGCTATATCTTTCTATGGCCTGGTAAATAAACTTGCGGAAAACCATAGGTCTCTTTTTGTTCCTTATTTCAAATACTTGCTGGAGAATTGTGTACATTATCTTACTGTCACTGGAGATGCAAAGCCTTCTGGTTTAACACGAAAGAAGAAGGCCAAGATTCAGGAATCCGATAACAGCATGTTCCTTGGAAACTGGCATCTTAGAGCGCTGGTCTTATCATCATTACATAAATGTTTTCTCTATGATACGGGAAGCATGAAGTTTCTTGATTCTTCCAATTTTCAGGTTCTACTGAAGCCCATTGTTTCCCAGCTTGTTATAGAACCTCCAGTTTCTCTAGAGGAGCATTCTGACATTCCGTCTGTGAAGGAAGTTGATGAATTATTGGTTGTTTGTGTTGGTCAAATGGCAGTGACTGCAGGAAGTGATCTTCTATGGAAGCCCTTGAATTATGAGGTGCTGATGCAGACACGCAGTGACAAGGTCCGTGCAAGAATTTTGGGCCTGAGAATTATCAAATATCTTGTGGAGCATCTAAGAGAAGAATATCTGGTATTTGTTCCAGAAACAGTTCCCTTCTTTGCTGAGTTGCTTGAGGATGTCGAGCCTTCTGTTAAATCTCTGGCACAAGAAATCTTCAACGAACTGAGCACCATGACTGGTGAAGACCTCTCACAGTATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0048024 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090351 GO:0097159 GO:1901363 GO:1903311 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

2116

Amino Acids

237.48

Weight (kDa)

6.49

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U3snoRNP10	PF12397	233 - 357	2.4e-15	U3 small nucleolar RNA-associated protein 10
ARM_At3g06530	PF24477	627 - 819	1.1e-80	At3g06530-like, ARM repeats
HEAT_HEATR1	PF23243	1333 - 1519	1.3e-65	HEATR1-like, HEAT repeats
BP28CT	PF08146	1811 - 1973	1.5e-39	BP28CT (NUC211) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53180 AT5G53180 AT5G53180 AT5G53180 AT5G53180 AT5G53180
fragaria_vesca	FvH4_7g31120
malus_domestica	MD01G1216000.v1.1 MD07G1285900.v1.1
prunus_persica	Prupe.2G308000_v2.0.a1
pyrus_communis	pycom01g22680 pycom07g25930
rosa_chinensis	RchiOBHm_Chr1g0380181
rosa_laevigata	RLG00000026322
rosa_multiflora	Rmu_co8519101.1_g000001 Rmu_sc0001232.1_g000021 Rmu_sc0016989.1_g000003
rosa_roxburghii	Rroxscaffold_4G00279590
rosa_rugosa	Rorug01G0418700
rosa_samantha	Rh1AG443600 Rh1BG398500 Rh1CG411900 Rh1DG429200
rosa_wichuraiana	Rw1G038520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	162, 2759
Acc36I	ACCTGC	1 cut(s)	4438
AccB7I	CCANNNNNTGG	3 cut(s)	3145, 3612, 4468
AccBSI	CCGCTC	2 cut(s)	193, 1580
AccI	GTMKAC	3 cut(s)	54, 2162, 4894
AccIII	TCCGGA	1 cut(s)	1432
AciI	CCGC	8 cut(s)	76, 120, 193, 367, 1580, 4345, 5324, 5699
AclI	AACGTT	1 cut(s)	1765
AclWI	GGATC	5 cut(s)	101, 3957, 4364, 4753, 5251
AcoI	YGGCCR	4 cut(s)	1868, 1947, 4606, 5397
AdeI	CACNNNGTG	3 cut(s)	2445, 3938, 6140
AfeI	AGCGCT	2 cut(s)	4233, 5871
AfiI	CCNNNNNNNGG	7 cut(s)	192, 235, 3088, 3145, 3283, 3612, 4468
AflII	CTTAAG	2 cut(s)	4691, 5182
AgeI	ACCGGT	1 cut(s)	4857
AhdI	GACNNNNNGTC	3 cut(s)	1479, 1600, 6022
AhlI	ACTAGT	1 cut(s)	1958
AjnI	CCWGG	6 cut(s)	1921, 2511, 2625, 3644, 5115, 5682
AloI	GAACNNNNNNTCC	2 cut(s)	3257, 3289
Alw21I	GWGCWC	7 cut(s)	333, 418, 2424, 3429, 3656, 5223, 6317
Alw26I	GTCTC	6 cut(s)	425, 2335, 4459, 4816, 5570, 5718
Alw44I	GTGCAC	1 cut(s)	3425
AlwI	GGATC	5 cut(s)	101, 3957, 4364, 4753, 5251
AlwNI	CAGNNNCTG	4 cut(s)	3679, 4468, 5257, 6080
Ama87I	CYCGRG	2 cut(s)	353, 4373
Aor13HI	TCCGGA	1 cut(s)	1432
Aor51HI	AGCGCT	2 cut(s)	4233, 5871
ApaLI	GTGCAC	1 cut(s)	3425
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AseI	ATTAAT	6 cut(s)	461, 845, 2730, 3756, 4500, 5378
AsiGI	ACCGGT	1 cut(s)	4857
Asp700I	GAANNNNTTC	4 cut(s)	709, 2496, 2898, 6234
AspLEI	GCGC	4 cut(s)	523, 4234, 4384, 5872
AsuC2I	CCSGG	1 cut(s)	819
AsuHPI	GGTGA	6 cut(s)	2071, 2180, 4342, 5096, 5284, 6338
AsuNHI	GCTAGC	1 cut(s)	793
AvaI	CYCGRG	2 cut(s)	353, 4373
AvaII	GGWCC	7 cut(s)	1171, 2761, 2852, 3136, 3622, 4985, 6148
BaeGI	GKGCMC	2 cut(s)	3429, 3784
BalI	TGGCCA	4 cut(s)	1870, 1949, 4608, 5399
BanII	GRGCYC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	5040
BbsI	GAAGAC	9 cut(s)	1475, 2144, 2374, 2499, 2516, 2540, 3186, 3257, 6336
Bbv12I	GWGCWC	7 cut(s)	333, 418, 2424, 3429, 3656, 5223, 6317
BceAI	ACGGC	6 cut(s)	134, 406, 660, 1437, 3559, 5472
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	6 cut(s)	1923, 2513, 2627, 3646, 5117, 5684
BciVI	GTATCC	2 cut(s)	5056, 5065
BclI	TGATCA	5 cut(s)	630, 921, 2878, 4971, 5248
BcnI	CCSGG	1 cut(s)	819
BcoDI	GTCTC	6 cut(s)	425, 2335, 4459, 4816, 5570, 5718
BcuI	ACTAGT	1 cut(s)	1958
BfmI	CTRYAG	9 cut(s)	1078, 1989, 2178, 2322, 3215, 3960, 4010, 5646, 6081
BfoI	RGCGCY	3 cut(s)	524, 4235, 5873
BfrI	CTTAAG	2 cut(s)	4691, 5182
BfuAI	ACCTGC	1 cut(s)	4438
BfuI	GTATCC	2 cut(s)	5056, 5065
BglII	AGATCT	1 cut(s)	4734
BlpI	GCTNAGC	1 cut(s)	2825
BmcAI	AGTACT	3 cut(s)	302, 359, 1638
Bme1390I	CCNGG	7 cut(s)	819, 1923, 2513, 2627, 3646, 5117, 5684
Bme18I	GGWCC	7 cut(s)	1171, 2761, 2852, 3136, 3622, 4985, 6148
BmeRI	GACNNNNNGTC	3 cut(s)	1479, 1600, 6022
BmeT110I	CYCGRG	2 cut(s)	353, 4373
BmiI	GGNNCC	6 cut(s)	197, 3174, 3514, 3573, 4862, 4987
BmrFI	CCNGG	7 cut(s)	819, 1923, 2513, 2627, 3646, 5117, 5684
BmrI	ACTGGG	2 cut(s)	16, 4566
BmtI	GCTAGC	1 cut(s)	797
BmuI	ACTGGG	2 cut(s)	16, 4566
BpiI	GAAGAC	9 cut(s)	1475, 2144, 2374, 2499, 2516, 2540, 3186, 3257, 6336
BplI	GAGNNNNNCTC	2 cut(s)	3547, 3579
BpmI	CTGGAG	7 cut(s)	3110, 3159, 3752, 4445, 5765, 5796, 5976
Bpu10I	CCTNAGC	2 cut(s)	1854, 2366
Bpu1102I	GCTNAGC	1 cut(s)	2825
BpuEI	CTTGAG	6 cut(s)	188, 325, 329, 752, 4370, 6278
BpuMI	CCSGG	1 cut(s)	819
Bsa29I	ATCGAT	1 cut(s)	129
BsaAI	YACGTR	1 cut(s)	3482
BsaBI	GATNNNNATC	2 cut(s)	1273, 1560
BsaI	GGTCTC	2 cut(s)	425, 5718
BsaJI	CCNNGG	8 cut(s)	1494, 2003, 3520, 4989, 5058, 5115, 5660, 5848
BsaWI	WCCGGW	2 cut(s)	1432, 4857
BsaXI	ACNNNNNCTCC	6 cut(s)	799, 829, 3257, 3287, 4629, 4659
Bsc4I	CCNNNNNNNGG	7 cut(s)	192, 235, 3088, 3145, 3283, 3612, 4468
Bse118I	RCCGGY	2 cut(s)	4857, 5091
Bse3DI	GCAATG	5 cut(s)	554, 2989, 4003, 4347, 5553
Bse8I	GATNNNNATC	2 cut(s)	1273, 1560
BseAI	TCCGGA	1 cut(s)	1432
BseBI	CCWGG	6 cut(s)	1923, 2513, 2627, 3646, 5117, 5684
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	8 cut(s)	1494, 2003, 3520, 4989, 5058, 5115, 5660, 5848
BseJI	GATNNNNATC	2 cut(s)	1273, 1560
BseLI	CCNNNNNNNGG	7 cut(s)	192, 235, 3088, 3145, 3283, 3612, 4468
BseMI	GCAATG	5 cut(s)	554, 2989, 4003, 4347, 5553
BseRI	GAGGAG	1 cut(s)	6020
BseSI	GKGCMC	2 cut(s)	3429, 3784
BseYI	CCCAGC	2 cut(s)	1236, 5973
BsgI	GTGCAG	4 cut(s)	537, 563, 3120, 3281
BshTI	ACCGGT	1 cut(s)	4857
BshVI	ATCGAT	1 cut(s)	129
BsiHKAI	GWGCWC	7 cut(s)	333, 418, 2424, 3429, 3656, 5223, 6317
BsiHKCI	CYCGRG	2 cut(s)	353, 4373
BsiSI	CCGG	5 cut(s)	819, 1433, 4858, 5092, 5498
BslFI	GGGAC	4 cut(s)	4, 1029, 3326, 3572
BslI	CCNNNNNNNGG	7 cut(s)	192, 235, 3088, 3145, 3283, 3612, 4468
BsmAI	GTCTC	6 cut(s)	425, 2335, 4459, 4816, 5570, 5718
BsmFI	GGGAC	4 cut(s)	4, 1029, 3326, 3572
BsmI	GAATGC	4 cut(s)	987, 1738, 5397, 6010
Bso31I	GGTCTC	2 cut(s)	425, 5718
BsoBI	CYCGRG	2 cut(s)	353, 4373
Bsp1286I	GDGCHC	8 cut(s)	333, 418, 2424, 3429, 3656, 3784, 5223, 6317
Bsp13I	TCCGGA	1 cut(s)	1432
Bsp1407I	TGTACA	2 cut(s)	387, 5755
Bsp1720I	GCTNAGC	1 cut(s)	2825
BspACI	CCGC	8 cut(s)	76, 120, 193, 367, 1580, 4345, 5324, 5699
BspDI	ATCGAT	1 cut(s)	129
BspEI	TCCGGA	1 cut(s)	1432
BspHI	TCATGA	1 cut(s)	4563
BspLI	GGNNCC	6 cut(s)	197, 3174, 3514, 3573, 4862, 4987
BspMAI	CTGCAG	6 cut(s)	1993, 2326, 3219, 4014, 5650, 6085
BspMI	ACCTGC	1 cut(s)	4438
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	5 cut(s)	101, 3957, 4364, 4753, 5251
BspTI	CTTAAG	2 cut(s)	4691, 5182
BspTNI	GGTCTC	2 cut(s)	425, 5718
BsrBI	CCGCTC	2 cut(s)	193, 1580
BsrDI	GCAATG	5 cut(s)	554, 2989, 4003, 4347, 5553
BsrFI	RCCGGY	2 cut(s)	4857, 5091
BsrGI	TGTACA	2 cut(s)	387, 5755
BssAI	RCCGGY	2 cut(s)	4857, 5091
BssECI	CCNNGG	8 cut(s)	1494, 2003, 3520, 4989, 5058, 5115, 5660, 5848
BssSI	CACGAG	1 cut(s)	5040
BssT1I	CCWWGG	5 cut(s)	1494, 2003, 3520, 4989, 5848
Bst2BI	CACGAG	1 cut(s)	5040
Bst2UI	CCWGG	6 cut(s)	1923, 2513, 2627, 3646, 5117, 5684
Bst6I	CTCTTC	8 cut(s)	107, 858, 968, 2604, 2889, 3548, 4398, 4879
BstAFI	CTTAAG	2 cut(s)	4691, 5182
BstAPI	GCANNNNNTGC	5 cut(s)	2261, 2951, 4363, 4930, 6080
BstAUI	TGTACA	2 cut(s)	387, 5755
BstBAI	YACGTR	1 cut(s)	3482
BstEII	GGTNACC	1 cut(s)	5438
BstH2I	RGCGCY	3 cut(s)	524, 4235, 5873
BstHHI	GCGC	4 cut(s)	523, 4234, 4384, 5872
BstMAI	GTCTC	6 cut(s)	425, 2335, 4459, 4816, 5570, 5718
BstNI	CCWGG	6 cut(s)	1923, 2513, 2627, 3646, 5117, 5684
BstNSI	RCATGY	6 cut(s)	1707, 1899, 3128, 4181, 4538, 5845
BstPI	GGTNACC	1 cut(s)	5438
BstSCI	CCNGG	7 cut(s)	817, 1921, 2511, 2625, 3644, 5115, 5682
BstSFI	CTRYAG	9 cut(s)	1078, 1989, 2178, 2322, 3215, 3960, 4010, 5646, 6081
BstSLI	GKGCMC	2 cut(s)	3429, 3784
BstV2I	GAAGAC	9 cut(s)	1475, 2144, 2374, 2499, 2516, 2540, 3186, 3257, 6336
BstX2I	RGATCY	4 cut(s)	3949, 4369, 4734, 5243
BstXI	CCANNNNNNTGG	1 cut(s)	1945
BstYI	RGATCY	4 cut(s)	3949, 4369, 4734, 5243
Bsu15I	ATCGAT	1 cut(s)	129
BsuI	GTATCC	2 cut(s)	5056, 5065
BsuTUI	ATCGAT	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	2330
BtsI	GCAGTG	5 cut(s)	3049, 3108, 3677, 6081, 6145
BveI	ACCTGC	1 cut(s)	4438
CaiI	CAGNNNCTG	4 cut(s)	3679, 4468, 5257, 6080
CciI	TCATGA	1 cut(s)	4563
CfoI	GCGC	4 cut(s)	523, 4234, 4384, 5872
Cfr10I	RCCGGY	2 cut(s)	4857, 5091
ClaI	ATCGAT	1 cut(s)	129
CseI	GACGC	4 cut(s)	6, 2053, 3048, 3191
CspAI	ACCGGT	1 cut(s)	4857
DraIII	CACNNNGTG	3 cut(s)	2445, 3938, 6140
DrdI	GACNNNNNNGTC	2 cut(s)	162, 2759
DriI	GACNNNNNGTC	3 cut(s)	1479, 1600, 6022
DseDI	GACNNNNNNGTC	2 cut(s)	162, 2759
EaeI	YGGCCR	4 cut(s)	1868, 1947, 4606, 5397
Eam1104I	CTCTTC	8 cut(s)	107, 858, 968, 2604, 2889, 3548, 4398, 4879
Eam1105I	GACNNNNNGTC	3 cut(s)	1479, 1600, 6022
EarI	CTCTTC	8 cut(s)	107, 858, 968, 2604, 2889, 3548, 4398, 4879
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	5 cut(s)	1494, 2003, 3520, 4989, 5848
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	425, 5718
Eco32I	GATATC	6 cut(s)	127, 133, 1271, 2173, 2454, 3700
Eco47I	GGWCC	7 cut(s)	1171, 2761, 2852, 3136, 3622, 4985, 6148
Eco47III	AGCGCT	2 cut(s)	4233, 5871
Eco53kI	GAGCTC	1 cut(s)	331
Eco88I	CYCGRG	2 cut(s)	353, 4373
Eco91I	GGTNACC	1 cut(s)	5438
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	1171
EcoO65I	GGTNACC	1 cut(s)	5438
EcoRI	GAATTC	2 cut(s)	2917, 3301
EcoRII	CCWGG	6 cut(s)	1921, 2511, 2625, 3644, 5115, 5682
EcoRV	GATATC	6 cut(s)	127, 133, 1271, 2173, 2454, 3700
EcoT14I	CCWWGG	5 cut(s)	1494, 2003, 3520, 4989, 5848
EcoT22I	ATGCAT	4 cut(s)	595, 1664, 2997, 4536
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	5 cut(s)	1494, 2003, 3520, 4989, 5848
FaqI	GGGAC	4 cut(s)	4, 1029, 3326, 3572
FauNDI	CATATG	1 cut(s)	3873
FbaI	TGATCA	5 cut(s)	630, 921, 2878, 4971, 5248
FblI	GTMKAC	3 cut(s)	54, 2162, 4894
FriOI	GRGCYC	1 cut(s)	333
GlaI	GCGC	4 cut(s)	522, 4233, 4383, 5871
GsaI	CCCAGC	2 cut(s)	1240, 5977
GsuI	CTGGAG	7 cut(s)	3110, 3159, 3752, 4445, 5765, 5796, 5976
HaeII	RGCGCY	3 cut(s)	524, 4235, 5873
HapII	CCGG	5 cut(s)	819, 1433, 4858, 5092, 5498
HgaI	GACGC	4 cut(s)	6, 2053, 3048, 3191
HhaI	GCGC	4 cut(s)	523, 4234, 4384, 5872
Hin6I	GCGC	4 cut(s)	521, 4232, 4382, 5870
HinP1I	GCGC	4 cut(s)	521, 4232, 4382, 5870
HincII	GTYRAC	4 cut(s)	55, 1075, 2689, 5492
HindII	GTYRAC	4 cut(s)	55, 1075, 2689, 5492
HindIII	AAGCTT	4 cut(s)	3221, 3584, 4688, 5567
HpaII	CCGG	5 cut(s)	819, 1433, 4858, 5092, 5498
HphI	GGTGA	6 cut(s)	2071, 2180, 4342, 5096, 5284, 6338
Hpy99I	CGWCG	3 cut(s)	70, 191, 1452
HpyCH4IV	ACGT	5 cut(s)	1765, 2433, 2496, 3448, 3481
HpySE526I	ACGT	5 cut(s)	1765, 2433, 2496, 3448, 3481
HspAI	GCGC	4 cut(s)	521, 4232, 4382, 5870
Kpn2I	TCCGGA	1 cut(s)	1432
KroI	GCCGGC	1 cut(s)	5091
KroNI	GCCGGC	1 cut(s)	5093
Ksp22I	TGATCA	5 cut(s)	630, 921, 2878, 4971, 5248
MaeII	ACGT	5 cut(s)	1765, 2433, 2496, 3448, 3481
MbiI	CCGCTC	2 cut(s)	193, 1580
MfeI	CAATTG	2 cut(s)	3158, 4062
MflI	RGATCY	4 cut(s)	3949, 4369, 4734, 5243
MhlI	GDGCHC	8 cut(s)	333, 418, 2424, 3429, 3656, 3784, 5223, 6317
MlsI	TGGCCA	4 cut(s)	1870, 1949, 4608, 5399
MluNI	TGGCCA	4 cut(s)	1870, 1949, 4608, 5399
MmeI	TCCRAC	2 cut(s)	1347, 4389
Mox20I	TGGCCA	4 cut(s)	1870, 1949, 4608, 5399
Mph1103I	ATGCAT	4 cut(s)	595, 1664, 2997, 4536
MroI	TCCGGA	1 cut(s)	1432
MroNI	GCCGGC	1 cut(s)	5091
MroXI	GAANNNNTTC	4 cut(s)	709, 2496, 2898, 6234
MscI	TGGCCA	4 cut(s)	1870, 1949, 4608, 5399
MslI	CAYNNNNRTG	3 cut(s)	1755, 1943, 4728
Msp20I	TGGCCA	4 cut(s)	1870, 1949, 4608, 5399
MspA1I	CMGCKG	1 cut(s)	884
MspCI	CTTAAG	2 cut(s)	4691, 5182
MspI	CCGG	5 cut(s)	819, 1433, 4858, 5092, 5498
MspR9I	CCNGG	7 cut(s)	819, 1923, 2513, 2627, 3646, 5117, 5684
MunI	CAATTG	2 cut(s)	3158, 4062
Mva1269I	GAATGC	4 cut(s)	987, 1738, 5397, 6010
MvaI	CCWGG	6 cut(s)	1923, 2513, 2627, 3646, 5117, 5684
NaeI	GCCGGC	1 cut(s)	5093
NciI	CCSGG	1 cut(s)	819
NdeI	CATATG	1 cut(s)	3873
NgoMIV	GCCGGC	1 cut(s)	5091
NheI	GCTAGC	1 cut(s)	793
NlaIV	GGNNCC	6 cut(s)	197, 3174, 3514, 3573, 4862, 4987
NsiI	ATGCAT	4 cut(s)	595, 1664, 2997, 4536
NspI	RCATGY	6 cut(s)	1707, 1899, 3128, 4181, 4538, 5845
PacI	TTAATTAA	1 cut(s)	465
PaeI	GCATGC	3 cut(s)	1899, 4181, 4538
PaeR7I	CTCGAG	1 cut(s)	353
PagI	TCATGA	1 cut(s)	4563
PctI	GAATGC	4 cut(s)	987, 1738, 5397, 6010
PdiI	GCCGGC	1 cut(s)	5093
PdmI	GAANNNNTTC	4 cut(s)	709, 2496, 2898, 6234
PflFI	GACNNNGTC	2 cut(s)	4676, 6146
PflMI	CCANNNNNTGG	3 cut(s)	3145, 3612, 4468
PfoI	TCCNGGA	1 cut(s)	817
PinAI	ACCGGT	1 cut(s)	4857
Ppu21I	YACGTR	1 cut(s)	3482
PpuMI	RGGWCCY	1 cut(s)	1171
PshBI	ATTAAT	6 cut(s)	461, 845, 2730, 3756, 4500, 5378
Psp124BI	GAGCTC	1 cut(s)	333
Psp1406I	AACGTT	1 cut(s)	1765
Psp5II	RGGWCCY	1 cut(s)	1171
Psp6I	CCWGG	6 cut(s)	1921, 2511, 2625, 3644, 5115, 5682
PspEI	GGTNACC	1 cut(s)	5438
PspFI	CCCAGC	2 cut(s)	1236, 5973
PspGI	CCWGG	6 cut(s)	1921, 2511, 2625, 3644, 5115, 5682
PspN4I	GGNNCC	6 cut(s)	197, 3174, 3514, 3573, 4862, 4987
PspPPI	RGGWCCY	1 cut(s)	1171
PsrI	GAACNNNNNNTAC	2 cut(s)	1899, 1931
PstI	CTGCAG	6 cut(s)	1993, 2326, 3219, 4014, 5650, 6085
PstNI	CAGNNNCTG	4 cut(s)	3679, 4468, 5257, 6080
PsuI	RGATCY	4 cut(s)	3949, 4369, 4734, 5243
PsyI	GACNNNGTC	2 cut(s)	4676, 6146
PvuII	CAGCTG	1 cut(s)	884
RseI	CAYNNNNRTG	3 cut(s)	1755, 1943, 4728
SacI	GAGCTC	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	53
ScaI	AGTACT	3 cut(s)	302, 359, 1638
ScrFI	CCNGG	7 cut(s)	819, 1923, 2513, 2627, 3646, 5117, 5684
SduI	GDGCHC	8 cut(s)	333, 418, 2424, 3429, 3656, 3784, 5223, 6317
SfcI	CTRYAG	9 cut(s)	1078, 1989, 2178, 2322, 3215, 3960, 4010, 5646, 6081
Sfr274I	CTCGAG	1 cut(s)	353
SinI	GGWCC	7 cut(s)	1171, 2761, 2852, 3136, 3622, 4985, 6148
SlaI	CTCGAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	3 cut(s)	1755, 1943, 4728
SmlI	CTYRAG	9 cut(s)	167, 304, 344, 353, 731, 4385, 4691, 5182, 6257
SmoI	CTYRAG	9 cut(s)	167, 304, 344, 353, 731, 4385, 4691, 5182, 6257
SpeI	ACTAGT	1 cut(s)	1958
SphI	GCATGC	3 cut(s)	1899, 4181, 4538
SsiI	CCGC	8 cut(s)	76, 120, 193, 367, 1580, 4345, 5324, 5699
SspI	AATATT	4 cut(s)	2269, 2863, 4253, 4498
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	7 cut(s)	817, 1921, 2511, 2625, 3644, 5115, 5682
StyI	CCWWGG	5 cut(s)	1494, 2003, 3520, 4989, 5848
TaiI	ACGT	5 cut(s)	1768, 2436, 2499, 3451, 3484
TatI	WGTACW	7 cut(s)	300, 357, 387, 727, 1636, 4027, 5755
TauI	GCSGC	3 cut(s)	79, 122, 1583
TspGWI	ACGGA	5 cut(s)	758, 3444, 4121, 6012, 6140
Tth111I	GACNNNGTC	2 cut(s)	4676, 6146
Van91I	CCANNNNNTGG	3 cut(s)	3145, 3612, 4468
Vha464I	CTTAAG	2 cut(s)	4691, 5182
VneI	GTGCAC	1 cut(s)	3425
VpaK11BI	GGWCC	7 cut(s)	1171, 2761, 2852, 3136, 3622, 4985, 6148
VspI	ATTAAT	6 cut(s)	461, 845, 2730, 3756, 4500, 5378
XbaI	TCTAGA	2 cut(s)	4840, 6001
XceI	RCATGY	6 cut(s)	1707, 1899, 3128, 4181, 4538, 5845
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1960, 3239
XhoI	CTCGAG	1 cut(s)	353
XmiI	GTMKAC	3 cut(s)	54, 2162, 4894
XmnI	GAANNNNTTC	4 cut(s)	709, 2496, 2898, 6234
ZrmI	AGTACT	3 cut(s)	302, 359, 1638
Zsp2I	ATGCAT	4 cut(s)	595, 1664, 2997, 4536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.