pycom07g25930

Polypyrimidine tract-binding protein homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
26087717 .. 26091770
4054 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g25930.3

Sequence Viewer

Length: 1326 bp
ATGGCTTCTGTGTCCAGTCAGCCACAGTTCCGGTACACTCAGCCACCATCTAAGGTGCTTCATTTGAGGAACTTGCCTTGGGAGTGTACGGAGGAGGAACTGATAGAACTGGGAAAGCCATTTGGTAAAGTTGTCAACACAAAGTGCAATGTTGGAGCAAACCGTAATCAGGCATTTATTGAATTTGCAGATTTAAATCAAGCCATTGCGATGATATCATATTATGCGTCATCTTCAGAACCCGCTCAAGTAAGGGGGAAAACTGTTTACCTACAGTACTCCAATAGGCAAGAAATAGTGAACAACAAAACAGCCGCAGATGTTGCAGGAAATGTACTGTTGGTAACAATTGAAGGTGCGGATGCACGCCTTGTCAGCATAGATATTTTACACCTGGTATTTTCAGCTTTTGGGTTTGTGCACAAGATAACTACATTTGAGAAGACTGCGGGATTCCAGGCACTGGTGCAATTTTCAGATGCAGAAACTGCCACTTCTGCCAAAACTGCACTGGATTCAAGAATCATCCCTAGGTATCTGCTCCCCGAGTATGTGGGACCATGTACTCTCAGGATAACATATTCTGGGCACACTGATTTGAGTGTGAAATTTCAAAGTCACCGAAGCAGGGACTACACTAATCCTACCCTTCCAGTTGCTCCATCAGCCATAGATGGAAGTGGTCAGCCAATTGTGGGATTAGATGGGAAAAAGCTAGAATCGGAGAGTAATGTGCTTCTTGCATCCATCGAAAACATGCAGTATGCTGTCACCTTGGACGTTTTACACATGGTCTTTTCTGCTTTTGGGCCTATTCAAAAGATCGCCATGTTTGATAAGAACGGAGGGGTTCAGGCTTTGATTCAGTATCCAGATGTTCAGACAGCTGTTGTTGCCAAGGAAGCCTTAGAAGGGCATTGCATTTACGATGGAGGGTTTTGCAAGCTCCACATCTCATATTCACGCCATACCGATCTTAGCATAAAGGTGAACAATGACCGGAGCAGAGACTATACGATCCCTACCATTCCAATTGTGACGGCACAACCGTCAATTCTAGGACAACAGCCAGTTCATCAGATGAGTCCCGCGGTGCCTCCATACAACGGGGCTCAATATGCTCCAACTGATCAGGCTGTGATGCCTCAGCCTTCTGCAGGGTGGAGACCAACCGTTCCGGCAGTTCCTCAGTCCATGCCCATTCAGATGCATAATCAACCGTACATGCCACCGGGAACTATGCCTGTATCCTCTCCTCAAATGGGCCCTGTGATGATGCAGAGCGGTCCGCCGCCTCCGCCCTACCACCGTGGTCATGTGCAATGA

Protein Analysis

442

Amino Acids

48.25

Weight (kDa)

6.67

Isoelectric Point (pI)

56.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1093
AccB7I CCANNNNNTGG 1 cut(s) 463
AccBSI CCGCTC 2 cut(s) 245, 1284
AccII CGCG 1 cut(s) 1091
AclWI GGATC 1 cut(s) 1012
AcsI RAATTY 2 cut(s) 182, 608
AcuI CTGAAG 1 cut(s) 219
AdeI CACNNNGTG 1 cut(s) 144
AfaI GTAC 6 cut(s) 35, 88, 278, 336, 565, 1223
AfiI CCNNNNNNNGG 8 cut(s) 169, 463, 628, 695, 912, 1106, 1157, 1262
AgsI TTSAA 5 cut(s) 182, 353, 519, 614, 818
AjnI CCWGG 2 cut(s) 393, 456
AluBI AGCT 4 cut(s) 407, 715, 887, 946
AluI AGCT 4 cut(s) 407, 715, 887, 946
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 2 cut(s) 1002, 1159
Alw44I GTGCAC 1 cut(s) 419
AlwI GGATC 1 cut(s) 1012
AlwNI CAGNNNCTG 2 cut(s) 463, 488
Ama87I CYCGRG 1 cut(s) 545
AoxI GGCC 2 cut(s) 809, 1264
ApaI GGGCCC 1 cut(s) 1268
ApaLI GTGCAC 1 cut(s) 419
ApoI RAATTY 2 cut(s) 182, 608
AspA2I CCTAGG 1 cut(s) 530
AspS9I GGNCC 5 cut(s) 557, 809, 1264, 1265, 1286
AsuC2I CCSGG 1 cut(s) 1233
AsuHPI GGTGA 3 cut(s) 611, 763, 1000
AvaI CYCGRG 1 cut(s) 545
AvaII GGWCC 2 cut(s) 557, 1286
AvrII CCTAGG 1 cut(s) 530
BaeGI GKGCMC 3 cut(s) 423, 591, 1268
BanI GGYRCC 1 cut(s) 1093
BanII GRGCYC 2 cut(s) 1114, 1268
BbsI GAAGAC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 423
BbvCI CCTCAGC 1 cut(s) 1146
BccI CCATC 6 cut(s) 55, 668, 670, 698, 755, 923
BceAI ACGGC 1 cut(s) 1056
BciT130I CCWGG 2 cut(s) 395, 458
BciVI GTATCC 2 cut(s) 879, 1258
BclI TGATCA 1 cut(s) 1129
BcnI CCSGG 1 cut(s) 1233
BcoDI GTCTC 2 cut(s) 1002, 1159
BfaI CTAG 3 cut(s) 531, 716, 1058
BfmI CTRYAG 2 cut(s) 272, 1155
BfuI GTATCC 2 cut(s) 879, 1258
BisI GCNGC 2 cut(s) 315, 1292
BlnI CCTAGG 1 cut(s) 530
BlsI GCNGC 2 cut(s) 316, 1293
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 3 cut(s) 395, 458, 1233
Bme18I GGWCC 2 cut(s) 557, 1286
BmeT110I CYCGRG 1 cut(s) 545
BmgT120I GGNCC 5 cut(s) 557, 809, 1264, 1265, 1286
BmiI GGNNCC 3 cut(s) 558, 1095, 1266
BmrFI CCNGG 3 cut(s) 395, 458, 1233
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 6 cut(s) 352, 469, 752, 1131, 1197, 1266
BmuI ACTGGG 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 1146
BpuEI CTTGAG 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 1233
BsaBI GATNNNNATC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 1159
BsaJI CCNNGG 6 cut(s) 77, 530, 774, 897, 1089, 1309
BsaWI WCCGGW 2 cut(s) 30, 999
Bsc4I CCNNNNNNNGG 8 cut(s) 169, 463, 628, 695, 912, 1106, 1157, 1262
Bse1I ACTGG 6 cut(s) 15, 114, 468, 516, 653, 1070
Bse3DI GCAATG 3 cut(s) 154, 204, 916
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 2 cut(s) 395, 458
BseDI CCNNGG 6 cut(s) 77, 530, 774, 897, 1089, 1309
BseGI GGATG 3 cut(s) 367, 525, 743
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 8 cut(s) 169, 463, 628, 695, 912, 1106, 1157, 1262
BseMI GCAATG 3 cut(s) 154, 204, 916
BseMII CTCAG 4 cut(s) 53, 583, 1160, 1202
BseNI ACTGG 6 cut(s) 15, 114, 468, 516, 653, 1070
BseRI GAGGAG 2 cut(s) 107, 1245
BseSI GKGCMC 3 cut(s) 423, 591, 1268
BsgI GTGCAG 1 cut(s) 492
Bsh1236I CGCG 1 cut(s) 1091
BshFI GGCC 2 cut(s) 811, 1266
BshNI GGYRCC 1 cut(s) 1093
BsiHKAI GWGCWC 1 cut(s) 423
BsiHKCI CYCGRG 1 cut(s) 545
BsiSI CCGG 4 cut(s) 31, 1000, 1178, 1232
BslFI GGGAC 3 cut(s) 570, 644, 1071
BslI CCNNNNNNNGG 8 cut(s) 169, 463, 628, 695, 912, 1106, 1157, 1262
BsmAI GTCTC 2 cut(s) 1002, 1159
BsmFI GGGAC 3 cut(s) 570, 644, 1071
BsnI GGCC 2 cut(s) 811, 1266
Bso31I GGTCTC 1 cut(s) 1159
BsoBI CYCGRG 1 cut(s) 545
Bsp120I GGGCCC 1 cut(s) 1264
Bsp1286I GDGCHC 4 cut(s) 423, 591, 1114, 1268
Bsp143I GATC 4 cut(s) 822, 973, 1017, 1129
BspANI GGCC 2 cut(s) 811, 1266
BspCNI CTCAG 4 cut(s) 52, 582, 1159, 1201
BspFNI CGCG 1 cut(s) 1091
BspLI GGNNCC 3 cut(s) 558, 1095, 1266
BspMAI CTGCAG 1 cut(s) 1159
BspPI GGATC 1 cut(s) 1012
BspT107I GGYRCC 1 cut(s) 1093
BspTNI GGTCTC 1 cut(s) 1159
BsrBI CCGCTC 2 cut(s) 245, 1284
BsrDI GCAATG 3 cut(s) 154, 204, 916
BsrI ACTGG 6 cut(s) 15, 114, 468, 516, 653, 1070
BssECI CCNNGG 6 cut(s) 77, 530, 774, 897, 1089, 1309
BssMI GATC 4 cut(s) 822, 973, 1017, 1129
BssT1I CCWWGG 4 cut(s) 77, 530, 774, 897
Bst2UI CCWGG 2 cut(s) 395, 458
Bst4CI ACNGT 9 cut(s) 27, 164, 265, 276, 339, 1050, 1174, 1221, 1310
BstAPI GCANNNNNTGC 2 cut(s) 323, 488
BstC8I GCNNGC 2 cut(s) 367, 944
BstDEI CTNAG 7 cut(s) 39, 51, 569, 907, 977, 1146, 1188
BstDSI CCRYGG 2 cut(s) 1089, 1309
BstENI CCTNNNNNAGG 1 cut(s) 1155
BstF5I GGATG 3 cut(s) 367, 525, 743
BstFNI CGCG 1 cut(s) 1091
BstKTI GATC 4 cut(s) 825, 976, 1020, 1132
BstMAI GTCTC 2 cut(s) 1002, 1159
BstMBI GATC 4 cut(s) 822, 973, 1017, 1129
BstNI CCWGG 2 cut(s) 395, 458
BstNSI RCATGY 2 cut(s) 760, 1228
BstSCI CCNGG 3 cut(s) 393, 456, 1231
BstSFI CTRYAG 2 cut(s) 272, 1155
BstSLI GKGCMC 3 cut(s) 423, 591, 1268
BstUI CGCG 1 cut(s) 1091
BstV2I GAAGAC 1 cut(s) 449
BsuI GTATCC 2 cut(s) 879, 1258
BsuRI GGCC 2 cut(s) 811, 1266
BtgI CCRYGG 2 cut(s) 1089, 1309
BtgZI GCGATG 1 cut(s) 224
BtsCI GGATG 3 cut(s) 367, 525, 743
BtsIMutI CAGTG 3 cut(s) 461, 509, 591
Cac8I GCNNGC 2 cut(s) 367, 944
CaiI CAGNNNCTG 2 cut(s) 463, 488
Cfr13I GGNCC 5 cut(s) 557, 809, 1264, 1265, 1286
Cfr42I CCGCGG 1 cut(s) 1092
CpoI CGGWCCG 1 cut(s) 1286
CseI GACGC 1 cut(s) 216
CsiI ACCWGGT 1 cut(s) 393
Csp6I GTAC 6 cut(s) 34, 87, 277, 335, 564, 1222
CspI CGGWCCG 1 cut(s) 1286
CviAII CATG 7 cut(s) 561, 757, 790, 829, 1195, 1225, 1316
CviQI GTAC 6 cut(s) 34, 87, 277, 335, 564, 1222
DdeI CTNAG 7 cut(s) 39, 51, 569, 907, 977, 1146, 1188
DpnI GATC 4 cut(s) 824, 975, 1019, 1131
DpnII GATC 4 cut(s) 822, 973, 1017, 1129
DraI TTTAAA 1 cut(s) 195
DraIII CACNNNGTG 1 cut(s) 144
EciI GGCGGA 2 cut(s) 1278, 1287
Eco130I CCWWGG 4 cut(s) 77, 530, 774, 897
Eco24I GRGCYC 2 cut(s) 1114, 1268
Eco31I GGTCTC 1 cut(s) 1159
Eco32I GATATC 1 cut(s) 216
Eco47I GGWCC 2 cut(s) 557, 1286
Eco57I CTGAAG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 545
EcoNI CCTNNNNNAGG 1 cut(s) 1155
EcoO109I RGGNCCY 1 cut(s) 1265
EcoRII CCWGG 2 cut(s) 393, 456
EcoRV GATATC 1 cut(s) 216
EcoT14I CCWWGG 4 cut(s) 77, 530, 774, 897
EcoT22I ATGCAT 1 cut(s) 1212
EcoT38I GRGCYC 2 cut(s) 1114, 1268
ErhI CCWWGG 4 cut(s) 77, 530, 774, 897
FaeI CATG 7 cut(s) 564, 760, 793, 832, 1198, 1228, 1319
FalI AAGNNNNNCTT 2 cut(s) 890, 922
FaqI GGGAC 3 cut(s) 570, 644, 1071
FatI CATG 7 cut(s) 560, 756, 789, 828, 1194, 1224, 1315
FauI CCCGC 3 cut(s) 250, 442, 1096
FbaI TGATCA 1 cut(s) 1129
Fnu4HI GCNGC 2 cut(s) 315, 1292
FokI GGATG 3 cut(s) 374, 512, 730
FriOI GRGCYC 2 cut(s) 1114, 1268
Fsp4HI GCNGC 2 cut(s) 315, 1292
FspBI CTAG 3 cut(s) 531, 716, 1058
GluI GCNGC 2 cut(s) 315, 1292
HaeIII GGCC 2 cut(s) 811, 1266
HapII CCGG 4 cut(s) 31, 1000, 1178, 1232
HgaI GACGC 1 cut(s) 216
Hin1II CATG 7 cut(s) 564, 760, 793, 832, 1198, 1228, 1319
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 6 cut(s) 453, 515, 522, 719, 862, 1084
HpaII CCGG 4 cut(s) 31, 1000, 1178, 1232
HphI GGTGA 3 cut(s) 611, 763, 1000
Hpy166II GTNNAC 7 cut(s) 36, 87, 136, 268, 301, 421, 991
Hpy188I TCNGA 6 cut(s) 238, 478, 724, 882, 1080, 1206
Hpy188III TCNNGA 3 cut(s) 519, 571, 872
Hpy8I GTNNAC 7 cut(s) 36, 87, 136, 268, 301, 421, 991
HpyAV CCTTC 4 cut(s) 347, 659, 905, 1161
HpyCH4III ACNGT 9 cut(s) 27, 164, 265, 276, 339, 1050, 1174, 1221, 1310
HpyCH4IV ACGT 1 cut(s) 780
HpyF3I CTNAG 7 cut(s) 39, 51, 569, 907, 977, 1146, 1188
HpySE526I ACGT 1 cut(s) 780
Hsp92II CATG 7 cut(s) 564, 760, 793, 832, 1198, 1228, 1319
Ksp22I TGATCA 1 cut(s) 1129
KspI CCGCGG 1 cut(s) 1092
Kzo9I GATC 4 cut(s) 822, 973, 1017, 1129
LmnI GCTCC 6 cut(s) 155, 546, 664, 951, 1002, 1126
LweI GCATC 6 cut(s) 352, 469, 752, 1131, 1197, 1266
MabI ACCWGGT 1 cut(s) 393
MaeI CTAG 3 cut(s) 531, 716, 1058
MaeII ACGT 1 cut(s) 780
MaeIII GTNAC 4 cut(s) 343, 617, 769, 1036
MalI GATC 4 cut(s) 824, 975, 1019, 1131
MbiI CCGCTC 2 cut(s) 245, 1284
MboI GATC 4 cut(s) 822, 973, 1017, 1129
MboII GAAGA 2 cut(s) 225, 454
MfeI CAATTG 3 cut(s) 348, 690, 1032
MhlI GDGCHC 4 cut(s) 423, 591, 1114, 1268
MluCI AATT 7 cut(s) 182, 348, 470, 608, 690, 1032, 1053
MlyI GAGTC 1 cut(s) 1093
MmeI TCCRAC 2 cut(s) 133, 1148
Mph1103I ATGCAT 1 cut(s) 1212
MseI TTAA 1 cut(s) 194
MslI CAYNNNNRTG 3 cut(s) 209, 986, 1205
MspA1I CMGCKG 2 cut(s) 887, 1091
MspI CCGG 4 cut(s) 31, 1000, 1178, 1232
MspR9I CCNGG 3 cut(s) 395, 458, 1233
MunI CAATTG 3 cut(s) 348, 690, 1032
MvaI CCWGG 2 cut(s) 395, 458
MvnI CGCG 1 cut(s) 1091
NciI CCSGG 1 cut(s) 1233
NdeII GATC 4 cut(s) 822, 973, 1017, 1129
NlaIII CATG 7 cut(s) 564, 760, 793, 832, 1198, 1228, 1319
NlaIV GGNNCC 3 cut(s) 558, 1095, 1266
NmuCI GTSAC 3 cut(s) 617, 769, 1036
NsiI ATGCAT 1 cut(s) 1212
NspI RCATGY 2 cut(s) 760, 1228
PcsI WCGNNNNNNNCGW 1 cut(s) 1046
PfeI GAWTC 5 cut(s) 453, 515, 522, 719, 862
PflMI CCANNNNNTGG 1 cut(s) 463
PkrI GCNGC 2 cut(s) 316, 1293
PleI GAGTC 1 cut(s) 1092
PpsI GAGTC 1 cut(s) 1092
Psp6I CCWGG 2 cut(s) 393, 456
PspGI CCWGG 2 cut(s) 393, 456
PspN4I GGNNCC 3 cut(s) 558, 1095, 1266
PspOMI GGGCCC 1 cut(s) 1264
PspPI GGNCC 5 cut(s) 557, 809, 1264, 1265, 1286
PstI CTGCAG 1 cut(s) 1159
PstNI CAGNNNCTG 2 cut(s) 463, 488
PvuII CAGCTG 1 cut(s) 887
RsaI GTAC 6 cut(s) 35, 88, 278, 336, 565, 1223
RsaNI GTAC 6 cut(s) 34, 87, 277, 335, 564, 1222
RseI CAYNNNNRTG 3 cut(s) 209, 986, 1205
Rsr2I CGGWCCG 1 cut(s) 1286
RsrII CGGWCCG 1 cut(s) 1286
SacII CCGCGG 1 cut(s) 1092
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 2 cut(s) 315, 1292
Sau3AI GATC 4 cut(s) 822, 973, 1017, 1129
Sau96I GGNCC 5 cut(s) 557, 809, 1264, 1265, 1286
ScaI AGTACT 1 cut(s) 278
SchI GAGTC 1 cut(s) 1093
ScrFI CCNGG 3 cut(s) 395, 458, 1233
SduI GDGCHC 4 cut(s) 423, 591, 1114, 1268
SexAI ACCWGGT 1 cut(s) 393
SfaNI GCATC 6 cut(s) 352, 469, 752, 1131, 1197, 1266
SfcI CTRYAG 2 cut(s) 272, 1155
Sfr303I CCGCGG 1 cut(s) 1092
SgrBI CCGCGG 1 cut(s) 1092
SinI GGWCC 2 cut(s) 557, 1286
SmiI ATTTAAAT 1 cut(s) 195
SmiMI CAYNNNNRTG 3 cut(s) 209, 986, 1205
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 7 cut(s) 182, 348, 470, 608, 690, 1032, 1053
SspMI CTAG 3 cut(s) 531, 716, 1058
StyD4I CCNGG 3 cut(s) 393, 456, 1231
StyI CCWWGG 4 cut(s) 77, 530, 774, 897
SwaI ATTTAAAT 1 cut(s) 195
TaaI ACNGT 9 cut(s) 27, 164, 265, 276, 339, 1050, 1174, 1221, 1310
TaiI ACGT 1 cut(s) 783
TaqI TCGA 1 cut(s) 750
TasI AATT 7 cut(s) 182, 348, 470, 608, 690, 1032, 1053
TatI WGTACW 3 cut(s) 276, 334, 563
TauI GCSGC 2 cut(s) 317, 1294
TfiI GAWTC 5 cut(s) 453, 515, 522, 719, 862
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 3 cut(s) 468, 516, 598
TseFI GTSAC 3 cut(s) 617, 769, 1036
Tsp45I GTSAC 3 cut(s) 617, 769, 1036
TspDTI ATGAA 2 cut(s) 50, 1064
TspGWI ACGGA 2 cut(s) 104, 858
TspRI CASTG 3 cut(s) 468, 516, 598
Van91I CCANNNNNTGG 1 cut(s) 463
VneI GTGCAC 1 cut(s) 419
VpaK11BI GGWCC 2 cut(s) 557, 1286
XagI CCTNNNNNAGG 1 cut(s) 1155
XapI RAATTY 2 cut(s) 182, 608
XceI RCATGY 2 cut(s) 760, 1228
XcmI CCANNNNNNNNNTGG 1 cut(s) 508
XmaJI CCTAGG 1 cut(s) 530
XspI CTAG 3 cut(s) 531, 716, 1058
ZrmI AGTACT 1 cut(s) 278
Zsp2I ATGCAT 1 cut(s) 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.