AT5G55190

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014946
Physical Location & Seq
Forward (+)
22392063 .. 22394185
2123 bp
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UTR
Exon/CDS
Intron
AT5G55190.1

Sequence Viewer

Length: 666 bp
ATGGCTCTACCTAACCAGCAAACCGTGGATTACCCTAGCTTCAAGCTCGTTATCGTTGGCGATGGAGGCACAGGGAAGACCACATTTGTAAAGAGACATCTTACTGGAGAGTTTGAGAAGAAGTATGAACCCACTATTGGTGTTGAGGTTCATCCTCTTGATTTCTTCACTAACTGTGGCAAGATCCGTTTCTACTGTTGGGATACTGCTGGCCAAGAGAAATTTGGTGGTCTTAGGGATGGTTACTACATCCATGGACAATGTGCTATCATCATGTTTGATGTCACAGCACGACTGACATACAAGAATGTTCCAACATGGCACCGTGATCTTTGCAGGGTTTGTGAAAACATCCCAATTGTTCTTTGTGGGAATAAAGTTGATGTGAAGAACAGGCAAGTCAAGGCCAAGCAGGTAACATTCCACAGGAAGAAGAACCTCCAGTATTACGAGATATCTGCCAAGAGCAACTACAACTTCGAGAAGCCATTCTTGTACCTTGCTAGAAAGCTCGCCGGGGACGCTAATCTTCACTTTGTGGAATCACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGACTTGGCTGCTCAGCAGCAGCATGAGGCGGAGCTTGCAGCAGCAGCAAGTCAGCCACTTCCTGATGACGATGATGACACCTTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030054 GO:0030312 GO:0031503 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042254 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046907 GO:0048046 GO:0050657 GO:0050658 GO:0050896 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055044 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0097159 GO:0097367 GO:1901265 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169
Pfam Domains
Protein Families
Ras

Protein Analysis

221

Amino Acids

25.08

Weight (kDa)

6.39

Isoelectric Point (pI)

29.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 13 - 138 1.1e-10 ADP-ribosylation factor family
Ras PF00071 15 - 171 1.2e-47 Ras family
Roc PF08477 15 - 128 2.9e-30 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014946)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55190
fragaria_vesca FvH4_2g29670
malus_domestica MD08G1143300.v1.1 MD15G1120100.v1.1
prunus_persica Prupe.1G472900_v2.0.a1 Prupe.7G237800_v2.0.a1
pyrus_communis pycom08g12200 pycom15g10820
rosa_chinensis RchiOBHm_Chr6g0298651
rosa_laevigata RLG00000011496
rosa_multiflora Rmu_sc0007345.1_g000002 Rmu_sc0008099.1_g000009
rosa_rugosa Rorug06G0281800
rosa_samantha Rh6BG401200 Rh6DG393800
rosa_wichuraiana Rw6G034400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 556
Acc36I ACCTGC 2 cut(s) 403, 556
AccB1I GGYRCC 1 cut(s) 321
AciI CCGC 1 cut(s) 605
AclWI GGATC 1 cut(s) 178
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 1 cut(s) 221
AdeI CACNNNGTG 1 cut(s) 538
AfaI GTAC 1 cut(s) 497
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 43, 572
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AluBI AGCT 4 cut(s) 39, 46, 511, 610
AluI AGCT 4 cut(s) 39, 46, 511, 610
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 1 cut(s) 178
AoxI GGCC 2 cut(s) 211, 405
ApeKI GCWGC 6 cut(s) 584, 592, 595, 614, 617, 620
ApoI RAATTY 1 cut(s) 221
Asp700I GAANNNNTTC 1 cut(s) 488
AsuC2I CCSGG 2 cut(s) 517, 563
AsuHPI GGTGA 1 cut(s) 537
BalI TGGCCA 1 cut(s) 213
BanI GGYRCC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 83
BbvI GCAGC 6 cut(s) 571, 604, 607, 626, 629, 632
BccI CCATC 2 cut(s) 56, 233
BcgI CGANNNNNNTGC 4 cut(s) 440, 474, 566, 600
BciVI GTATCC 1 cut(s) 196
BcnI CCSGG 2 cut(s) 517, 563
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 2 cut(s) 36, 504
BfuAI ACCTGC 2 cut(s) 403, 556
BfuI GTATCC 1 cut(s) 196
BisI GCNGC 6 cut(s) 585, 593, 596, 615, 618, 621
BlpI GCTNAGC 1 cut(s) 588
BlsI GCNGC 6 cut(s) 586, 594, 597, 616, 619, 622
Bme1390I CCNGG 2 cut(s) 517, 563
BmiI GGNNCC 1 cut(s) 323
BmrFI CCNGG 2 cut(s) 517, 563
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 2 cut(s) 126, 425
Bpu1102I GCTNAGC 1 cut(s) 588
BpuMI CCSGG 2 cut(s) 517, 563
BsaJI CCNNGG 4 cut(s) 24, 253, 516, 561
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 109, 442
BseDI CCNNGG 4 cut(s) 24, 253, 516, 561
BseGI GGATG 4 cut(s) 151, 244, 249, 351
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 602
BseNI ACTGG 2 cut(s) 109, 442
BseXI GCAGC 6 cut(s) 571, 604, 607, 626, 629, 632
BshFI GGCC 2 cut(s) 213, 407
BshNI GGYRCC 1 cut(s) 321
BsiSI CCGG 2 cut(s) 516, 563
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 533
BsnI GGCC 2 cut(s) 213, 407
Bsp143I GATC 2 cut(s) 183, 328
Bsp1720I GCTNAGC 1 cut(s) 588
Bsp19I CCATGG 1 cut(s) 253
BspACI CCGC 1 cut(s) 605
BspANI GGCC 2 cut(s) 213, 407
BspCNI CTCAG 1 cut(s) 601
BspLI GGNNCC 1 cut(s) 323
BspMI ACCTGC 2 cut(s) 403, 556
BspPI GGATC 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 321
BsrI ACTGG 2 cut(s) 109, 442
BssECI CCNNGG 4 cut(s) 24, 253, 516, 561
BssMI GATC 2 cut(s) 183, 328
BssT1I CCWWGG 1 cut(s) 253
Bst4CI ACNGT 4 cut(s) 25, 176, 197, 326
BstC8I GCNNGC 3 cut(s) 211, 513, 612
BstDEI CTNAG 2 cut(s) 233, 588
BstDSI CCRYGG 2 cut(s) 24, 253
BstF5I GGATG 4 cut(s) 151, 244, 249, 351
BstKTI GATC 2 cut(s) 186, 331
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 2 cut(s) 183, 328
BstMWI GCNNNNNNNGC 4 cut(s) 66, 521, 611, 620
BstSCI CCNGG 2 cut(s) 515, 561
BstV1I GCAGC 6 cut(s) 571, 604, 607, 626, 629, 632
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BsuI GTATCC 1 cut(s) 196
BsuRI GGCC 2 cut(s) 213, 407
BtgI CCRYGG 2 cut(s) 24, 253
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 4 cut(s) 151, 244, 249, 351
BveI ACCTGC 2 cut(s) 403, 556
Cac8I GCNNGC 3 cut(s) 211, 513, 612
CseI GACGC 1 cut(s) 530
Csp6I GTAC 1 cut(s) 496
CviAII CATG 4 cut(s) 254, 274, 318, 599
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 2 cut(s) 233, 588
DpnI GATC 2 cut(s) 185, 330
DpnII GATC 2 cut(s) 183, 328
DraIII CACNNNGTG 1 cut(s) 538
EaeI YGGCCR 1 cut(s) 211
EciI GGCGGA 1 cut(s) 620
Eco130I CCWWGG 1 cut(s) 253
Eco32I GATATC 1 cut(s) 456
EcoRV GATATC 1 cut(s) 456
EcoT14I CCWWGG 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 4 cut(s) 257, 277, 321, 602
FaiI YATR 6 cut(s) 126, 255, 275, 301, 319, 600
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FaqI GGGAC 1 cut(s) 533
FatI CATG 4 cut(s) 253, 273, 317, 598
Fnu4HI GCNGC 6 cut(s) 585, 593, 596, 615, 618, 621
FokI GGATG 4 cut(s) 138, 236, 251, 338
Fsp4HI GCNGC 6 cut(s) 585, 593, 596, 615, 618, 621
FspBI CTAG 2 cut(s) 36, 504
GluI GCNGC 6 cut(s) 585, 593, 596, 615, 618, 621
GsuI CTGGAG 2 cut(s) 126, 425
HaeIII GGCC 2 cut(s) 213, 407
HapII CCGG 2 cut(s) 516, 563
HgaI GACGC 1 cut(s) 530
Hin1II CATG 4 cut(s) 257, 277, 321, 602
HinfI GANTC 1 cut(s) 542
HpaII CCGG 2 cut(s) 516, 563
HphI GGTGA 1 cut(s) 537
Hpy188III TCNNGA 3 cut(s) 158, 481, 638
HpyCH4III ACNGT 4 cut(s) 25, 176, 197, 326
HpyCH4V TGCA 2 cut(s) 336, 614
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 521, 611, 620
HpyF3I CTNAG 2 cut(s) 233, 588
Hsp92II CATG 4 cut(s) 257, 277, 321, 602
Kzo9I GATC 2 cut(s) 183, 328
LmnI GCTCC 2 cut(s) 562, 607
Lsp1109I GCAGC 6 cut(s) 571, 604, 607, 626, 629, 632
MaeI CTAG 2 cut(s) 36, 504
MaeIII GTNAC 3 cut(s) 242, 283, 415
MalI GATC 2 cut(s) 185, 330
MboI GATC 2 cut(s) 183, 328
MboII GAAGA 7 cut(s) 88, 130, 157, 400, 442, 445, 521
MfeI CAATTG 1 cut(s) 357
MflI RGATCY 1 cut(s) 183
MlsI TGGCCA 1 cut(s) 213
MluCI AATT 2 cut(s) 221, 357
MluNI TGGCCA 1 cut(s) 213
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 5 cut(s) 59, 139, 165, 449, 595
Mox20I TGGCCA 1 cut(s) 213
MroXI GAANNNNTTC 1 cut(s) 488
MscI TGGCCA 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 213
MspI CCGG 2 cut(s) 516, 563
MspR9I CCNGG 2 cut(s) 517, 563
MunI CAATTG 1 cut(s) 357
MwoI GCNNNNNNNGC 4 cut(s) 66, 521, 611, 620
NciI CCSGG 2 cut(s) 517, 563
NcoI CCATGG 1 cut(s) 253
NdeII GATC 2 cut(s) 183, 328
NlaIII CATG 4 cut(s) 257, 277, 321, 602
NlaIV GGNNCC 1 cut(s) 323
NmuCI GTSAC 1 cut(s) 283
PaqCI CACCTGC 1 cut(s) 556
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 1 cut(s) 542
PkrI GCNGC 6 cut(s) 586, 594, 597, 616, 619, 622
PspN4I GGNNCC 1 cut(s) 323
PsuI RGATCY 1 cut(s) 183
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
SatI GCNGC 6 cut(s) 585, 593, 596, 615, 618, 621
Sau3AI GATC 2 cut(s) 183, 328
ScrFI CCNGG 2 cut(s) 517, 563
Sse9I AATT 2 cut(s) 221, 357
SsiI CCGC 1 cut(s) 605
SspMI CTAG 2 cut(s) 36, 504
StyD4I CCNGG 2 cut(s) 515, 561
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 4 cut(s) 25, 176, 197, 326
TaqI TCGA 3 cut(s) 480, 576, 660
TasI AATT 2 cut(s) 221, 357
TfiI GAWTC 1 cut(s) 542
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 6 cut(s) 584, 592, 595, 614, 617, 620
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 140, 141
TspGWI ACGGA 1 cut(s) 176
XapI RAATTY 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 2 cut(s) 36, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.